Rorug04G0410400

NDR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006390
Physical Location & Seq
Reverse (-)
57308311 .. 57308682
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0410400.1

Sequence Viewer

Length: 372 bp
ATGGACGTATCACCTGACCTTGTAGTCCATGAAATCCTGAAATACCTATCTACCAGACAAGCCGTCCGGGCAAGCATTCTCTCCAAGCAATGGGAACTTGTTTGGTCTTCGGTCCCCGTATTAGATTTTGACGAGGATGAGAAAGAGCAACTTGGTGATGATGATGATGATGGCAACTATCTTCGACACAAAATGTTCGTCGAATTTGTGACAATGTGTTTGAAGCGGCGTGAGAAAGATGAGTTGTCACATAAAATGAGGCTTCGCATGAGATATCCCTGTAGAGACAAAGAAAACTGTTGCTCAAATCTTACGAATAAGTGTGTGAGATCTGCTATAGACAGAAATGTTAAAAGAGTTATACATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

123

Amino Acids

14.57

Weight (kDa)

6.89

Isoelectric Point (pI)

53.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 40 3.4e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 23
AccB7I CCANNNNNTGG 1 cut(s) 90
AciI CCGC 1 cut(s) 226
AcsI RAATTY 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 1 cut(s) 223
AhdI GACNNNNNGTC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 279
ApoI RAATTY 1 cut(s) 203
ArsI GACNNNNNNTTYG 4 cut(s) 183, 202, 215, 234
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 3, 167
AvaII GGWCC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 99
BccI CCATC 1 cut(s) 164
BceAI ACGGC 1 cut(s) 47
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 279
BfmI CTRYAG 2 cut(s) 280, 336
BglI GCCNNNNNGGC 1 cut(s) 68
BglII AGATCT 1 cut(s) 329
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 112
BmeRI GACNNNNNGTC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 95
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 67
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 279
BsmFI GGGAC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 329
BspACI CCGC 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 95
BssMI GATC 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 73
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 1 cut(s) 332
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 1 cut(s) 329
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstSFI CTRYAG 2 cut(s) 280, 336
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BtsCI GGATG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 112
CviAII CATG 3 cut(s) 29, 268, 365
CviJI RGCY 3 cut(s) 62, 262, 369
CviKI_1 RGCY 3 cut(s) 62, 262, 369
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
DrdI GACNNNNNNGTC 1 cut(s) 23
DriI GACNNNNNGTC 1 cut(s) 62
DseDI GACNNNNNNGTC 1 cut(s) 23
Eam1105I GACNNNNNGTC 1 cut(s) 62
Eco32I GATATC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 112
EcoRV GATATC 1 cut(s) 275
FaeI CATG 3 cut(s) 32, 271, 368
FaiI YATR 6 cut(s) 30, 252, 269, 338, 362, 366
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FaqI GGGAC 1 cut(s) 98
FatI CATG 3 cut(s) 28, 267, 364
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 227
HapII CCGG 1 cut(s) 67
Hin1II CATG 3 cut(s) 32, 271, 368
HpaII CCGG 1 cut(s) 67
HphI GGTGA 2 cut(s) 3, 167
Hpy188III TCNNGA 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4IV ACGT 1 cut(s) 6
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 3 cut(s) 32, 271, 368
Kzo9I GATC 1 cut(s) 329
LpnPI CCDG 5 cut(s) 27, 50, 67, 80, 292
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 208, 246
MalI GATC 1 cut(s) 331
MboI GATC 1 cut(s) 329
MboII GAAGA 2 cut(s) 99, 173
MflI RGATCY 1 cut(s) 329
MluCI AATT 1 cut(s) 203
MnlI CCTC 2 cut(s) 127, 252
MseI TTAA 1 cut(s) 351
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 68
NciI CCSGG 1 cut(s) 68
NdeII GATC 1 cut(s) 329
NlaIII CATG 3 cut(s) 32, 271, 368
NlaIV GGNNCC 1 cut(s) 114
NmuCI GTSAC 2 cut(s) 208, 246
PctI GAATGC 1 cut(s) 75
PflMI CCANNNNNTGG 1 cut(s) 90
PkrI GCNGC 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 112
PsuI RGATCY 1 cut(s) 329
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 1 cut(s) 329
Sau96I GGNCC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 68
SetI ASST 4 cut(s) 9, 16, 21, 48
SfcI CTRYAG 2 cut(s) 280, 336
SinI GGWCC 1 cut(s) 112
Sse9I AATT 1 cut(s) 203
SsiI CCGC 1 cut(s) 226
StyD4I CCNGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 299
TaiI ACGT 1 cut(s) 9
TaqI TCGA 2 cut(s) 184, 201
TaqII GACCGA 1 cut(s) 100
TasI AATT 1 cut(s) 203
TauI GCSGC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TseFI GTSAC 2 cut(s) 208, 246
Tsp45I GTSAC 2 cut(s) 208, 246
TspDTI ATGAA 1 cut(s) 45
Van91I CCANNNNNTGG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.