RLG00000031203

NDR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006390
Physical Location & Seq
Forward (+)
2938315 .. 2938896
582 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031203

Sequence Viewer

Length: 582 bp
ATGTGTGAAAGTGAAAAAATGTATTTCCATGCGTGTGTTCTGGAAACTCTGGCAATTCTGGGTTTTCTGGCCTTTTTTCTGTGGCTAATTTTTCACGTGAAATCCCCTAGTTATACCATTGTGGATATCACCATCCCAAACTCTAGTTTAGAGAATGGGGGTCAGAATGGCTATATTGTCTATGCCCTTGAAATTAAAAACTCCAACACATACTACGGTATTTACTATGATACCTCACTCTTGACGTTCAATTATGGGCAGGATAAAGTTGCAGAGAAAACCATACCTCCTTCTCATCAAGGAACTGGCAGAAGCAGACGGCGTACAGTGATTGATTATATGGATGCCAATCCACAAGTGTGGAAAGCTGTTCGCAAATCAATATCGAATGCAAGTGCAGAATTGAAGGTGGGTTTACTAACTAGGATTCGATGCACAACATGGGGAACCAAGAGGCATCATGTGGTAGACTTGCAAGGTTTGTTACTAATAGGTAAAGATGGCAAGCTTTCTGGTAAGAAGAAGAAAATCAAGCTAAGATATGCTTCCAAGAAACTGAGGACGAATAGTCTTCGATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

194

Amino Acids

21.98

Weight (kDa)

9.78

Isoelectric Point (pI)

36.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 63 - 154 6.6e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 468
AcvI CACGTG 1 cut(s) 97
AfaI GTAC 1 cut(s) 325
AgsI TTSAA 3 cut(s) 191, 250, 406
AhdI GACNNNNNGTC 1 cut(s) 567
AleI CACNNNNGTG 1 cut(s) 358
AluBI AGCT 3 cut(s) 368, 508, 535
AluI AGCT 3 cut(s) 368, 508, 535
AoxI GGCC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 121
BaeI ACNNNNGTAYC 2 cut(s) 588, 621
BbrPI CACGTG 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 563
BccI CCATC 2 cut(s) 140, 494
BceAI ACGGC 1 cut(s) 335
BfaI CTAG 3 cut(s) 108, 144, 423
BmeRI GACNNNNNGTC 1 cut(s) 567
BmiI GGNNCC 1 cut(s) 448
BmsI GCATC 3 cut(s) 334, 422, 466
BpiI GAAGAC 1 cut(s) 563
BsaAI YACGTR 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bse1I ACTGG 1 cut(s) 310
Bse8I GATNNNNATC 1 cut(s) 348
BseGI GGATG 2 cut(s) 132, 349
BseJI GATNNNNATC 1 cut(s) 348
BseMII CTCAG 1 cut(s) 548
BseNI ACTGG 1 cut(s) 310
BsgI GTGCAG 1 cut(s) 417
BshFI GGCC 1 cut(s) 71
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 1 cut(s) 71
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 549
BspLI GGNNCC 1 cut(s) 448
BsrI ACTGG 1 cut(s) 310
Bst4CI ACNGT 2 cut(s) 218, 328
BstBAI YACGTR 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 506
BstDEI CTNAG 2 cut(s) 536, 557
BstF5I GGATG 2 cut(s) 132, 349
BstV2I GAAGAC 1 cut(s) 563
BstXI CCANNNNNNTGG 1 cut(s) 360
BsuRI GGCC 1 cut(s) 71
BtsCI GGATG 2 cut(s) 132, 349
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 506
Csp6I GTAC 1 cut(s) 324
CviAII CATG 3 cut(s) 29, 441, 461
CviJI RGCY 6 cut(s) 71, 85, 171, 368, 508, 535
CviKI_1 RGCY 6 cut(s) 71, 85, 171, 368, 508, 535
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 2 cut(s) 536, 557
DriI GACNNNNNGTC 1 cut(s) 567
Eam1105I GACNNNNNGTC 1 cut(s) 567
Eco32I GATATC 1 cut(s) 127
Eco72I CACGTG 1 cut(s) 97
EcoRV GATATC 1 cut(s) 127
FaeI CATG 3 cut(s) 32, 444, 464
FalI AAGNNNNNCTT 2 cut(s) 529, 561
FatI CATG 3 cut(s) 28, 440, 460
FblI GTMKAC 1 cut(s) 468
FokI GGATG 2 cut(s) 119, 356
FspBI CTAG 3 cut(s) 108, 144, 423
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 3 cut(s) 32, 444, 464
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 1 cut(s) 427
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 2 cut(s) 416, 469
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 2 cut(s) 41, 241
Hpy8I GTNNAC 2 cut(s) 416, 469
HpyAV CCTTC 2 cut(s) 300, 400
HpyCH4III ACNGT 2 cut(s) 218, 328
HpyCH4IV ACGT 2 cut(s) 96, 245
HpyCH4V TGCA 5 cut(s) 272, 392, 398, 435, 475
HpyF3I CTNAG 2 cut(s) 536, 557
HpySE526I ACGT 2 cut(s) 96, 245
Hsp92II CATG 3 cut(s) 32, 444, 464
LpnPI CCDG 7 cut(s) 26, 35, 44, 53, 245, 291, 498
LweI GCATC 3 cut(s) 334, 422, 466
MaeI CTAG 3 cut(s) 108, 144, 423
MaeII ACGT 2 cut(s) 96, 245
MaeIII GTNAC 1 cut(s) 483
MboII GAAGA 3 cut(s) 532, 535, 563
MluCI AATT 5 cut(s) 54, 87, 192, 250, 401
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 4 cut(s) 244, 297, 447, 552
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 2 cut(s) 33, 358
Mva1269I GAATGC 1 cut(s) 394
NlaIII CATG 3 cut(s) 32, 444, 464
NlaIV GGNNCC 1 cut(s) 448
OliI CACNNNNGTG 1 cut(s) 358
PctI GAATGC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 427
PmaCI CACGTG 1 cut(s) 97
PmlI CACGTG 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 97
PspCI CACGTG 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 448
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
RseI CAYNNNNRTG 2 cut(s) 33, 358
SaqAI TTAA 1 cut(s) 195
SfaNI GCATC 3 cut(s) 334, 422, 466
SmiMI CAYNNNNRTG 2 cut(s) 33, 358
Sse9I AATT 5 cut(s) 54, 87, 192, 250, 401
SspMI CTAG 3 cut(s) 108, 144, 423
TaaI ACNGT 2 cut(s) 218, 328
TaiI ACGT 2 cut(s) 99, 248
TaqI TCGA 3 cut(s) 386, 430, 574
TasI AATT 5 cut(s) 54, 87, 192, 250, 401
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 333
TspRI CASTG 1 cut(s) 333
XmiI GTMKAC 1 cut(s) 468
XspI CTAG 3 cut(s) 108, 144, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.