Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006390

Physical Location & Seq

Genomic Coordinates Forward (+)

1252961 .. 1253545

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G026900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTGCGAGATCAAGAATTTCTACTGCTGGCTCCTAGAATTTTCCGTACTCCTGCTTCTCCTAGCTCTCTGTCTATGGCTGGCCATACGTCCAGAATCCCCCAAGTATACCATTGTGGATATCACCATCCCGAAGTCCGATATAGACAGTGGGGGTCAAAATGGCTCTATCATATACGCCCTTGAAATTGAAAATTCCAACAAAGTCTCTAGTATTTACTACGAGGACACAATTTTGAGATTCTATTATGGGTCAGAGACTGTTGGGGAGAAAACCATACCTTATTTTCATCAAGGAAGAGGTAAAACCTGTCAAGTGACTGATTCTGTGGATGCCAACCAGCAAGTTTGGAAAGCTATTCGCAATTCCATATCCAATGCAACTGCAGAACTGAAGGTGGCAGTGCTAACTCGGGTTCAATATAGAACATGGGGAGTGAAGAGTAAGCATCATGGATTAGACTTGCAAAGTCAATTATCGATTGGTTCAAATGGTAAGATTTTTGGTAAGACGAAGAAAATTAAGCTACGCCGTGCTTCCAAGAAATGGAGGAGGAGGACTAATAGACGACGATTGTTATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

195

Amino Acids

22.34

Weight (kDa)

9.8

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006390)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02720
malus_domestica	MD05G1340600.v1.1 MD10G1314100.v1.1
prunus_persica	Prupe.4G026900_v2.0.a1 Prupe.4G027000_v2.0.a1
pyrus_communis	pycom05g30980
rosa_chinensis	RchiOBHm_Chr5g0004101 RchiOBHm_Chr5g0004121
rosa_laevigata	RLG00000031202 RLG00000031203
rosa_multiflora	Rmu_co8237107.1_g000001 Rmu_sc0000547.1_g000032 Rmu_sc0000547.1_g000035 Rmu_sc0000547.1_g000036
rosa_roxburghii	Rroxscaffold_1G00071910 Rroxscaffold_1G00071920
rosa_rugosa	Rorug04G0410300 Rorug04G0410400
rosa_samantha	Rh5AG037500 Rh5BG036600 Rh5BG036700 Rh5BG036800 Rh5CG040200 Rh5DG036100 Rh5DG036200
rosa_wichuraiana	Rw5G003390 Rw5G003570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	546
AccI	GTMKAC	1 cut(s)	107
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	3 cut(s)	16, 38, 193
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	546
AgsI	TTSAA	4 cut(s)	185, 191, 419, 489
AluBI	AGCT	3 cut(s)	65, 356, 526
AluI	AGCT	3 cut(s)	65, 356, 526
Alw26I	GTCTC	2 cut(s)	211, 251
AlwNI	CAGNNNCTG	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	411
AoxI	GGCC	1 cut(s)	81
ApoI	RAATTY	3 cut(s)	16, 38, 193
AsuHPI	GGTGA	1 cut(s)	115
AvaI	CYCGRG	1 cut(s)	411
BalI	TGGCCA	1 cut(s)	83
BarI	GAAGNNNNNNTAC	2 cut(s)	39, 71
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	516
BcoDI	GTCTC	2 cut(s)	211, 251
BfaI	CTAG	4 cut(s)	35, 62, 210, 583
BfmI	CTRYAG	1 cut(s)	384
BmeT110I	CYCGRG	1 cut(s)	411
BmiI	GGNNCC	1 cut(s)	32
BmsI	GCATC	2 cut(s)	322, 457
Bsa29I	ATCGAT	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
BseCI	ATCGAT	1 cut(s)	479
BseGI	GGATG	2 cut(s)	126, 337
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseRI	GAGGAG	2 cut(s)	565, 568
BshFI	GGCC	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	479
BsiHKCI	CYCGRG	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	546
BsmAI	GTCTC	2 cut(s)	211, 251
BsnI	GGCC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	411
Bsp143I	GATC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	83
BspDI	ATCGAT	1 cut(s)	479
BspLI	GGNNCC	1 cut(s)	32
BspMAI	CTGCAG	1 cut(s)	388
BssMI	GATC	1 cut(s)	9
BssNAI	GTATAC	1 cut(s)	108
Bst1107I	GTATAC	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	149, 262
Bst6I	CTCTTC	2 cut(s)	292, 434
BstC8I	GCNNGC	2 cut(s)	29, 81
BstF5I	GGATG	2 cut(s)	126, 337
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	2 cut(s)	211, 251
BstMBI	GATC	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	384
BstZ17I	GTATAC	1 cut(s)	108
Bsu15I	ATCGAT	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	479
BtsCI	GGATG	2 cut(s)	126, 337
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	2 cut(s)	154, 408
Cac8I	GCNNGC	2 cut(s)	29, 81
CaiI	CAGNNNCTG	1 cut(s)	260
ClaI	ATCGAT	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	2 cut(s)	429, 452
CviJI	RGCY	7 cut(s)	31, 65, 79, 83, 165, 356, 526
CviKI_1	RGCY	7 cut(s)	31, 65, 79, 83, 165, 356, 526
CviQI	GTAC	1 cut(s)	47
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	292, 434
EarI	CTCTTC	2 cut(s)	292, 434
Eco32I	GATATC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	413
Eco88I	CYCGRG	1 cut(s)	411
EcoRV	GATATC	1 cut(s)	121
FaeI	CATG	2 cut(s)	432, 455
FatI	CATG	2 cut(s)	428, 451
FblI	GTMKAC	1 cut(s)	107
FokI	GGATG	2 cut(s)	113, 344
FspBI	CTAG	4 cut(s)	35, 62, 210, 583
HaeIII	GGCC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	432, 455
HinfI	GANTC	3 cut(s)	95, 240, 323
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	2 cut(s)	139, 256
Hpy188III	TCNNGA	3 cut(s)	13, 92, 130
Hpy8I	GTNNAC	1 cut(s)	108
Hpy99I	CGWCG	1 cut(s)	573
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	2 cut(s)	149, 262
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	3 cut(s)	380, 386, 466
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	2 cut(s)	432, 455
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	36
LpnPI	CCDG	6 cut(s)	13, 65, 65, 105, 322, 353
LweI	GCATC	2 cut(s)	322, 457
MaeI	CTAG	4 cut(s)	35, 62, 210, 583
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	3 cut(s)	309, 451, 526
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	8 cut(s)	16, 38, 186, 193, 231, 364, 473, 519
MluNI	TGGCCA	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	5 cut(s)	217, 293, 543, 546, 549
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	522
Msp20I	TGGCCA	1 cut(s)	83
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	2 cut(s)	432, 455
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	95, 240, 323
PflMI	CCANNNNNTGG	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	32
PstI	CTGCAG	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	260
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	522
Sau3AI	GATC	1 cut(s)	9
SetI	ASST	8 cut(s)	67, 91, 283, 304, 311, 358, 399, 528
SfaNI	GCATC	2 cut(s)	322, 457
SfcI	CTRYAG	1 cut(s)	384
Sse9I	AATT	8 cut(s)	16, 38, 186, 193, 231, 364, 473, 519
SspMI	CTAG	4 cut(s)	35, 62, 210, 583
TaaI	ACNGT	2 cut(s)	149, 262
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	1 cut(s)	479
TasI	AATT	8 cut(s)	16, 38, 186, 193, 231, 364, 473, 519
TfiI	GAWTC	3 cut(s)	95, 240, 323
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	2 cut(s)	154, 408
TseFI	GTSAC	1 cut(s)	316
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	2 cut(s)	154, 408
Van91I	CCANNNNNTGG	1 cut(s)	546
XapI	RAATTY	3 cut(s)	16, 38, 193
XmiI	GTMKAC	1 cut(s)	107
XspI	CTAG	4 cut(s)	35, 62, 210, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.