Rh5CG040200

NDR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006390
Physical Location & Seq
Forward (+)
2592331 .. 2592909
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG040200.1

Sequence Viewer

Length: 579 bp
ATGTGCGAAAGCGAAAACAAGCATTTCTATTTGTGTGTCTTAGAAATTTTGGCCCTTTTGGGTCTTCTGGCCTTAGTTCTTTGGCTAAGTTTACGCCCAAAGTCCCCTTGTTATACCATTGTGGATATCACCATTCCAAATTCTGATATAGAGAATGGGGCACAGAATGGCTCTATTGTGTATGTTCTTGAGATTGAAAACTCTAACAAAGACTCCAGTATTTTTTATGATACCTCAGTCTTGACGTTCTATTATGGGCAGGATAAAGTTGCAGAGAAAACCATACCTCCTTTTCATCAAGGAAGAAGCAAAACCCGTACGGTGATGGATGATATTGATGCCAATCCACAGGTGTGGAGATCTGTTCGCAATTCAATATCGAATGCAACTGCAGAGTTGAAGGTGACTTTGCTAACTAAGATTAGATACAAAACATGGGGAATCAAGAGTAAGCGTCACGGGCAAGACTTGCAAGGTGCATTACCAATAGGTAAAGACGGCAAGCTTTCTGGTAAGAAGAAGAAAATCAAGCTAAACCATGCTTCCAAGAAACTGAGGAGGAATAGTCTTAGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

192

Amino Acids

21.72

Weight (kDa)

9.66

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 63 - 153 5.2e-08 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 45, 139
AfaI GTAC 1 cut(s) 319
AgsI TTSAA 3 cut(s) 197, 375, 400
AleI CACNNNNGTG 1 cut(s) 352
AluBI AGCT 2 cut(s) 505, 532
AluI AGCT 2 cut(s) 505, 532
AoxI GGCC 2 cut(s) 51, 69
ApoI RAATTY 2 cut(s) 45, 139
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 3 cut(s) 121, 334, 415
BaeGI GKGCMC 1 cut(s) 163
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BbsI GAAGAC 1 cut(s) 56
BccI CCATC 1 cut(s) 319
BceAI ACGGC 1 cut(s) 514
BfmI CTRYAG 1 cut(s) 390
BglII AGATCT 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 52
BmsI GCATC 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 199
BpuEI CTTGAG 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 342
BsaXI ACNNNNNCTCC 5 cut(s) 197, 227, 271, 301, 550
Bse1I ACTGG 1 cut(s) 216
Bse8I GATNNNNATC 1 cut(s) 342
BseGI GGATG 1 cut(s) 334
BseJI GATNNNNATC 1 cut(s) 342
BseMII CTCAG 2 cut(s) 249, 545
BseNI ACTGG 1 cut(s) 216
BseRI GAGGAG 1 cut(s) 571
BseSI GKGCMC 1 cut(s) 163
BshFI GGCC 2 cut(s) 53, 71
BsiWI CGTACG 1 cut(s) 317
BslFI GGGAC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 88
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 2 cut(s) 53, 71
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 1 cut(s) 359
BspANI GGCC 2 cut(s) 53, 71
BspCNI CTCAG 2 cut(s) 248, 546
BspMAI CTGCAG 1 cut(s) 394
BsrI ACTGG 1 cut(s) 216
BssMI GATC 1 cut(s) 359
Bst4CI ACNGT 1 cut(s) 322
BstAPI GCANNNNNTGC 1 cut(s) 469
BstC8I GCNNGC 1 cut(s) 503
BstDEI CTNAG 7 cut(s) 40, 73, 86, 235, 417, 554, 569
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 1 cut(s) 362
BstMBI GATC 1 cut(s) 359
BstMWI GCNNNNNNNGC 2 cut(s) 460, 469
BstSFI CTRYAG 1 cut(s) 390
BstSLI GKGCMC 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 359
BstXI CCANNNNNNTGG 1 cut(s) 354
BstYI RGATCY 1 cut(s) 359
BsuRI GGCC 2 cut(s) 53, 71
BtsCI GGATG 1 cut(s) 334
Cac8I GCNNGC 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 52
CseI GACGC 1 cut(s) 443
Csp6I GTAC 1 cut(s) 318
CviAII CATG 2 cut(s) 435, 539
CviJI RGCY 6 cut(s) 53, 71, 85, 171, 505, 532
CviKI_1 RGCY 6 cut(s) 53, 71, 85, 171, 505, 532
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 7 cut(s) 40, 73, 86, 235, 417, 554, 569
DpnI GATC 1 cut(s) 361
DpnII GATC 1 cut(s) 359
Eco32I GATATC 1 cut(s) 127
EcoRV GATATC 1 cut(s) 127
FaeI CATG 2 cut(s) 438, 542
FaiI YATR 8 cut(s) 114, 149, 183, 228, 255, 284, 436, 540
FaqI GGGAC 1 cut(s) 88
FatI CATG 2 cut(s) 434, 538
FokI GGATG 1 cut(s) 341
GsuI CTGGAG 1 cut(s) 199
HaeIII GGCC 2 cut(s) 53, 71
HgaI GACGC 1 cut(s) 443
Hin1II CATG 2 cut(s) 438, 542
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 2 cut(s) 212, 441
HphI GGTGA 3 cut(s) 121, 334, 415
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 3 cut(s) 188, 241, 445
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 394
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 5 cut(s) 272, 386, 392, 472, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 460, 469
HpyF3I CTNAG 7 cut(s) 40, 73, 86, 235, 417, 554, 569
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 2 cut(s) 438, 542
Kzo9I GATC 1 cut(s) 359
LpnPI CCDG 5 cut(s) 53, 229, 245, 335, 495
LweI GCATC 1 cut(s) 328
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 2 cut(s) 403, 455
MalI GATC 1 cut(s) 361
MboI GATC 1 cut(s) 359
MboII GAAGA 4 cut(s) 56, 315, 529, 532
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 3 cut(s) 45, 139, 370
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 4 cut(s) 244, 297, 549, 552
MslI CAYNNNNRTG 1 cut(s) 352
Mva1269I GAATGC 1 cut(s) 388
MwoI GCNNNNNNNGC 2 cut(s) 460, 469
NdeII GATC 1 cut(s) 359
NlaIII CATG 2 cut(s) 438, 542
NmuCI GTSAC 2 cut(s) 403, 455
OliI CACNNNNGTG 1 cut(s) 352
PctI GAATGC 1 cut(s) 388
PfeI GAWTC 1 cut(s) 441
Pfl23II CGTACG 1 cut(s) 317
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PspLI CGTACG 1 cut(s) 317
PspPI GGNCC 1 cut(s) 52
PstI CTGCAG 1 cut(s) 394
PsuI RGATCY 1 cut(s) 359
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
RseI CAYNNNNRTG 1 cut(s) 352
Sau3AI GATC 1 cut(s) 359
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 206
SduI GDGCHC 1 cut(s) 163
SetI ASST 9 cut(s) 236, 248, 289, 354, 405, 478, 493, 507, 534
SfaNI GCATC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 352
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 3 cut(s) 45, 139, 370
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 380
TasI AATT 3 cut(s) 45, 139, 370
TfiI GAWTC 1 cut(s) 441
TseFI GTSAC 2 cut(s) 403, 455
Tsp45I GTSAC 2 cut(s) 403, 455
TspDTI ATGAA 1 cut(s) 284
XapI RAATTY 2 cut(s) 45, 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.