Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006390

Physical Location & Seq

Genomic Coordinates Reverse (-)

57301631 .. 57302893

Gene Structure 1263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0410300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCAGACGGCTCTTGCAAGCATCCTGGGGGTTAAATGTGTCCCAGAACATGACAAATATCTTGGCTTACCTCTTAGGGTTGGTAAATCTAAAATAGCCATCTTTGCTTACATCAAAGAGAAGCTCTCAAAAAAGCTAATTAGCTGGAAGTCTAACATCCTAAGTGCAGCAGGAAAGGAGACTATAATCAAAGCGGTAGCGCAAACAATGCCTCTATATGCTATGAATTGTTATTTGTTGCCACAGGGCCTCTGTGATGATATTCATCATTTATGTGCCTCTTTCTTCTGGGGAGATACTGCTGCGAAGAAGAAGATTCATTGGAGAAGTTGGGAGAGACTTTGCCTTACTAAGAATGAAGGAGCAAGATTCTACCCGTACACATCCTTTTGGGAAGCTCAACTAGGTGATGCTCCATCCTTTTCATGGAGAAGCATATTGCAAGGTCGACCTATTTTGCAGGCTGGCATTGCCTGGCATGTGGGAGATGGCACAAGCATTAGAGTATGGCAAGATAAGTGGATCCCTCATTGTCCACAGTATCTCATCCAGAAGCCTCCAAATTGCAATGTGGAATTTGTTTCGGACCTTATAGATGCCAACACTAGAATGTGGAAGGAAGCCTTGATGAGACAGATATTTCCTGCAGATATTGTCAACAAAGTGTTATGTTTACCATTGGCCAGAAGACATTCCTTCCCTAATCAAGAAGTCATAATTGAGACAGATTGCTTGGAAGCCACTAGTGATATAGCTAACCCAGGGTATGAAATGCTTGAGTTTCCTGGAGTGTTGGATGATATATGTACAGCTCTAAAGGATCAGATTGAAGTAAAGATATGCTTTGCCCCAAGAACTTGCAATGCAGTAGCACATAGATTGGCTAGTTTAGCCTTTGAAGACAATTGCAATACCATTTGGTCTCGTGTACCTCCAGATTGCATTCTGGATCTTCTACAATCAGATTGTAACCAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

326

Amino Acids

36.93

Weight (kDa)

7.47

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006390)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02720
malus_domestica	MD05G1340600.v1.1 MD10G1314100.v1.1
prunus_persica	Prupe.4G026900_v2.0.a1 Prupe.4G027000_v2.0.a1
pyrus_communis	pycom05g30980
rosa_chinensis	RchiOBHm_Chr5g0004101 RchiOBHm_Chr5g0004121
rosa_laevigata	RLG00000031202 RLG00000031203
rosa_multiflora	Rmu_co8237107.1_g000001 Rmu_sc0000547.1_g000032 Rmu_sc0000547.1_g000035 Rmu_sc0000547.1_g000036
rosa_roxburghii	Rroxscaffold_1G00071910 Rroxscaffold_1G00071920
rosa_rugosa	Rorug04G0410300 Rorug04G0410400
rosa_samantha	Rh5AG037500 Rh5BG036600 Rh5BG036700 Rh5BG036800 Rh5CG040200 Rh5DG036100 Rh5DG036200
rosa_wichuraiana	Rw5G003390 Rw5G003570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	448
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	4 cut(s)	517, 530, 828, 957
AcoI	YGGCCR	1 cut(s)	681
AcsI	RAATTY	1 cut(s)	575
AfaI	GTAC	3 cut(s)	380, 808, 930
AfiI	CCNNNNNNNGG	1 cut(s)	426
AgsI	TTSAA	2 cut(s)	830, 899
AhlI	ACTAGT	1 cut(s)	743
AjnI	CCWGG	4 cut(s)	24, 473, 760, 784
AluBI	AGCT	6 cut(s)	124, 136, 144, 398, 755, 812
AluI	AGCT	6 cut(s)	124, 136, 144, 398, 755, 812
Alw26I	GTCTC	5 cut(s)	173, 331, 625, 716, 927
AlwI	GGATC	4 cut(s)	517, 530, 828, 957
AoxI	GGCC	2 cut(s)	247, 681
ApeKI	GCWGC	2 cut(s)	167, 302
ApoI	RAATTY	1 cut(s)	575
Asp700I	GAANNNNTTC	1 cut(s)	691
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	247, 586
AsuHPI	GGTGA	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	586
BalI	TGGCCA	1 cut(s)	683
BamHI	GGATCC	1 cut(s)	522
BauI	CACGAG	1 cut(s)	924
BbsI	GAAGAC	2 cut(s)	694, 906
BbvI	GCAGC	2 cut(s)	179, 289
BccI	CCATC	3 cut(s)	107, 424, 482
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	4 cut(s)	26, 475, 762, 786
BcoDI	GTCTC	5 cut(s)	173, 331, 625, 716, 927
BcuI	ACTAGT	1 cut(s)	743
BfaI	CTAG	4 cut(s)	404, 606, 744, 885
BfmI	CTRYAG	1 cut(s)	645
BisI	GCNGC	2 cut(s)	168, 303
BlsI	GCNGC	2 cut(s)	169, 304
Bme1390I	CCNGG	4 cut(s)	26, 475, 762, 786
Bme18I	GGWCC	1 cut(s)	586
BmgT120I	GGNCC	2 cut(s)	247, 586
BmiI	GGNNCC	1 cut(s)	524
BmrFI	CCNGG	4 cut(s)	26, 475, 762, 786
BmsI	GCATC	3 cut(s)	30, 400, 586
BpiI	GAAGAC	2 cut(s)	694, 906
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpmI	CTGGAG	2 cut(s)	807, 918
BpuEI	CTTGAG	1 cut(s)	797
BsaBI	GATNNNNATC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	927
BsaJI	CCNNGG	3 cut(s)	25, 760, 761
Bsc4I	CCNNNNNNNGG	1 cut(s)	426
Bse3DI	GCAATG	3 cut(s)	468, 574, 868
Bse8I	GATNNNNATC	1 cut(s)	264
BseBI	CCWGG	4 cut(s)	26, 475, 762, 786
BseDI	CCNNGG	3 cut(s)	25, 760, 761
BseGI	GGATG	6 cut(s)	21, 156, 383, 416, 546, 802
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	426
BseMI	GCAATG	3 cut(s)	468, 574, 868
BseXI	GCAGC	2 cut(s)	179, 289
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	249, 683
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	426
BsmAI	GTCTC	5 cut(s)	173, 331, 625, 716, 927
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	942
BsnI	GGCC	2 cut(s)	249, 683
Bso31I	GGTCTC	1 cut(s)	927
Bsp1407I	TGTACA	1 cut(s)	806
Bsp143I	GATC	3 cut(s)	522, 820, 949
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	2 cut(s)	249, 683
BspLI	GGNNCC	1 cut(s)	524
BspMAI	CTGCAG	1 cut(s)	649
BspPI	GGATC	4 cut(s)	517, 530, 828, 957
BspTNI	GGTCTC	1 cut(s)	927
BsrDI	GCAATG	3 cut(s)	468, 574, 868
BsrGI	TGTACA	1 cut(s)	806
BssECI	CCNNGG	3 cut(s)	25, 760, 761
BssMI	GATC	3 cut(s)	522, 820, 949
BssSI	CACGAG	1 cut(s)	924
Bst2BI	CACGAG	1 cut(s)	924
Bst2UI	CCWGG	4 cut(s)	26, 475, 762, 786
Bst4CI	ACNGT	1 cut(s)	540
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstAUI	TGTACA	1 cut(s)	806
BstC8I	GCNNGC	3 cut(s)	19, 462, 466
BstDEI	CTNAG	3 cut(s)	74, 161, 351
BstF5I	GGATG	6 cut(s)	21, 156, 383, 416, 546, 802
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	3 cut(s)	525, 823, 952
BstMAI	GTCTC	5 cut(s)	173, 331, 625, 716, 927
BstMBI	GATC	3 cut(s)	522, 820, 949
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 208, 470, 890
BstNI	CCWGG	4 cut(s)	26, 475, 762, 786
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	4 cut(s)	24, 473, 760, 784
BstSFI	CTRYAG	1 cut(s)	645
BstV1I	GCAGC	2 cut(s)	179, 289
BstV2I	GAAGAC	2 cut(s)	694, 906
BstX2I	RGATCY	2 cut(s)	522, 949
BstYI	RGATCY	2 cut(s)	522, 949
BsuRI	GGCC	2 cut(s)	249, 683
BtsCI	GGATG	6 cut(s)	21, 156, 383, 416, 546, 802
Cac8I	GCNNGC	3 cut(s)	19, 462, 466
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	247, 586
Csp6I	GTAC	3 cut(s)	379, 807, 929
CspCI	CAANNNNNGTGG	2 cut(s)	500, 535
CviAII	CATG	3 cut(s)	50, 426, 479
CviQI	GTAC	3 cut(s)	379, 807, 929
DdeI	CTNAG	3 cut(s)	74, 161, 351
DpnI	GATC	3 cut(s)	524, 822, 951
DpnII	GATC	3 cut(s)	522, 820, 949
EaeI	YGGCCR	1 cut(s)	681
Eco31I	GGTCTC	1 cut(s)	927
Eco47I	GGWCC	1 cut(s)	586
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	4 cut(s)	24, 473, 760, 784
FaeI	CATG	3 cut(s)	53, 429, 482
FalI	AAGNNNNNCTT	4 cut(s)	608, 640, 827, 859
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	3 cut(s)	49, 425, 478
FblI	GTMKAC	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	168, 303
FokI	GGATG	6 cut(s)	8, 143, 370, 403, 533, 809
Fsp4HI	GCNGC	2 cut(s)	168, 303
FspBI	CTAG	4 cut(s)	404, 606, 744, 885
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	2 cut(s)	168, 303
GsuI	CTGGAG	2 cut(s)	807, 918
HaeIII	GGCC	2 cut(s)	249, 683
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	3 cut(s)	53, 429, 482
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	2 cut(s)	449, 658
HindII	GTYRAC	2 cut(s)	449, 658
HinfI	GANTC	2 cut(s)	316, 369
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	6 cut(s)	381, 449, 536, 658, 674, 929
Hpy188I	TCNGA	3 cut(s)	586, 825, 964
Hpy188III	TCNNGA	4 cut(s)	550, 707, 935, 947
Hpy8I	GTNNAC	6 cut(s)	381, 449, 536, 658, 674, 929
HpyAV	CCTTC	3 cut(s)	353, 610, 706
HpyCH4III	ACNGT	1 cut(s)	540
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 208, 470, 890
HpyF3I	CTNAG	3 cut(s)	74, 161, 351
Hsp92II	CATG	3 cut(s)	53, 429, 482
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	3 cut(s)	522, 820, 949
LmnI	GCTCC	2 cut(s)	362, 418
Lsp1109I	GCAGC	2 cut(s)	179, 289
LweI	GCATC	3 cut(s)	30, 400, 586
MaeI	CTAG	4 cut(s)	404, 606, 744, 885
MaeIII	GTNAC	1 cut(s)	968
MalI	GATC	3 cut(s)	524, 822, 951
MboI	GATC	3 cut(s)	522, 820, 949
MboII	GAAGA	7 cut(s)	277, 319, 322, 325, 699, 911, 944
MfeI	CAATTG	1 cut(s)	904
MflI	RGATCY	2 cut(s)	522, 949
MlsI	TGGCCA	1 cut(s)	683
MluCI	AATT	6 cut(s)	138, 226, 562, 575, 717, 904
MluNI	TGGCCA	1 cut(s)	683
MmeI	TCCRAC	1 cut(s)	774
MnlI	CCTC	7 cut(s)	81, 222, 260, 289, 537, 567, 942
Mox20I	TGGCCA	1 cut(s)	683
MroXI	GAANNNNTTC	1 cut(s)	691
MscI	TGGCCA	1 cut(s)	683
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	2 cut(s)	273, 608
Msp20I	TGGCCA	1 cut(s)	683
MspR9I	CCNGG	4 cut(s)	26, 475, 762, 786
MunI	CAATTG	1 cut(s)	904
Mva1269I	GAATGC	1 cut(s)	942
MvaI	CCWGG	4 cut(s)	26, 475, 762, 786
MwoI	GCNNNNNNNGC	4 cut(s)	104, 208, 470, 890
NdeII	GATC	3 cut(s)	522, 820, 949
NlaIII	CATG	3 cut(s)	53, 429, 482
NlaIV	GGNNCC	1 cut(s)	524
NspI	RCATGY	1 cut(s)	482
PasI	CCCWGGG	1 cut(s)	761
PctI	GAATGC	1 cut(s)	942
PdmI	GAANNNNTTC	1 cut(s)	691
PfeI	GAWTC	2 cut(s)	316, 369
PfoI	TCCNGGA	1 cut(s)	784
PkrI	GCNGC	2 cut(s)	169, 304
Psp6I	CCWGG	4 cut(s)	24, 473, 760, 784
PspGI	CCWGG	4 cut(s)	24, 473, 760, 784
PspN4I	GGNNCC	1 cut(s)	524
PspPI	GGNCC	2 cut(s)	247, 586
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	2 cut(s)	522, 949
RsaI	GTAC	3 cut(s)	380, 808, 930
RsaNI	GTAC	3 cut(s)	379, 807, 929
RseI	CAYNNNNRTG	2 cut(s)	273, 608
SalI	GTCGAC	1 cut(s)	447
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	2 cut(s)	168, 303
Sau3AI	GATC	3 cut(s)	522, 820, 949
Sau96I	GGNCC	2 cut(s)	247, 586
ScrFI	CCNGG	4 cut(s)	26, 475, 762, 786
SfaNI	GCATC	3 cut(s)	30, 400, 586
SfcI	CTRYAG	1 cut(s)	645
SinI	GGWCC	1 cut(s)	586
SmiMI	CAYNNNNRTG	2 cut(s)	273, 608
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
SpeI	ACTAGT	1 cut(s)	743
Sse9I	AATT	6 cut(s)	138, 226, 562, 575, 717, 904
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	4 cut(s)	404, 606, 744, 885
StyD4I	CCNGG	4 cut(s)	24, 473, 760, 784
TaaI	ACNGT	1 cut(s)	540
TaqI	TCGA	1 cut(s)	448
TasI	AATT	6 cut(s)	138, 226, 562, 575, 717, 904
TatI	WGTACW	1 cut(s)	806
TfiI	GAWTC	2 cut(s)	316, 369
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseI	GCWGC	2 cut(s)	167, 302
TspDTI	ATGAA	6 cut(s)	239, 254, 308, 372, 414, 783
VpaK11BI	GGWCC	1 cut(s)	586
XapI	RAATTY	1 cut(s)	575
XceI	RCATGY	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	691
XspI	CTAG	4 cut(s)	404, 606, 744, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.