pycom05g30980

NDR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0006390
Physical Location & Seq
Reverse (-)
30887529 .. 30888110
582 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g30980.1

Sequence Viewer

Length: 582 bp
ATGTGTGAAGCAAAGACTTTCAATTGCTGGGCTATGCAATTTCTAGCTTTCTTGGGACTCCTAGCCCTCTGTCTATGGGTGGCCTTACGTCCAAAGGAACCTGAGTATACCATCGTGGATATTACCATCCCAGAATCTGATTTAGGGGGCGGGGGACACAATGGTTCTCTCACATATGGCCTTCAAATAAAAAATCCTAACAAAGACTCTAGCATTTACTATGATGAGGCAGTTTTAACGTTCTTGTATGGGTCCAATAGTGTTGGGGAGAAACACATACCTGCTTTTCGGCAAGGAAAAGGTAAAACCCGTCAAGTGATTGATTTTGTTGATGTCAACCCACGAGTTTGGAAAACTTTTCGCAATTCCATATTGAATGCAACTGCAGAATTGAAGGTGGCTTTACTAACTCGGGTTCAATATAAAACATGGGGAGTGAGGAGTAAGCATCATGGGCTAGATTTGCACGGTAAATTACCTATCGGTTCAGATGGTAAGATTTCTGGTAAGAAGAAGAAAGTTAAGCTAAGCCATGCTTCCAAGAAATGGAGAAGGAGCAATAGCCAACGATTACTAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

194

Amino Acids

21.63

Weight (kDa)

9.88

Isoelectric Point (pI)

29.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 61 - 154 1.8e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 289
AccB7I CCANNNNNTGG 1 cut(s) 546
AccI GTMKAC 1 cut(s) 107
AciI CCGC 1 cut(s) 150
AclI AACGTT 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 546
AgsI TTSAA 5 cut(s) 22, 185, 376, 394, 419
AluBI AGCT 2 cut(s) 47, 526
AluI AGCT 2 cut(s) 47, 526
AlwNI CAGNNNCTG 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 411
AoxI GGCC 2 cut(s) 81, 178
AspS9I GGNCC 1 cut(s) 252
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 1 cut(s) 252
BauI CACGAG 1 cut(s) 342
BccI CCATC 3 cut(s) 119, 134, 485
BfaI CTAG 5 cut(s) 44, 62, 210, 458, 575
BfmI CTRYAG 1 cut(s) 384
BfuAI ACCTGC 1 cut(s) 289
BlpI GCTNAGC 1 cut(s) 527
Bme18I GGWCC 1 cut(s) 252
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 2 cut(s) 99, 253
BmsI GCATC 1 cut(s) 457
Bpu1102I GCTNAGC 1 cut(s) 527
Bsc4I CCNNNNNNNGG 1 cut(s) 546
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 546
BseMII CTCAG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 454
BseYI CCCAGC 1 cut(s) 27
BshFI GGCC 2 cut(s) 83, 180
BsiHKCI CYCGRG 1 cut(s) 411
BslFI GGGAC 2 cut(s) 69, 168
BslI CCNNNNNNNGG 1 cut(s) 546
BsmFI GGGAC 2 cut(s) 69, 168
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 2 cut(s) 83, 180
BsoBI CYCGRG 1 cut(s) 411
Bsp1720I GCTNAGC 1 cut(s) 527
BspACI CCGC 1 cut(s) 150
BspANI GGCC 2 cut(s) 83, 180
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 99, 253
BspMAI CTGCAG 1 cut(s) 388
BspMI ACCTGC 1 cut(s) 289
BssNAI GTATAC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 342
Bst1107I GTATAC 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 470
BstDEI CTNAG 2 cut(s) 102, 527
BstF5I GGATG 1 cut(s) 126
BstMWI GCNNNNNNNGC 2 cut(s) 454, 463
BstSFI CTRYAG 1 cut(s) 384
BstXI CCANNNNNNTGG 1 cut(s) 348
BstZ17I GTATAC 1 cut(s) 108
BsuRI GGCC 2 cut(s) 83, 180
BtsCI GGATG 1 cut(s) 126
BveI ACCTGC 1 cut(s) 289
CaiI CAGNNNCTG 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 252
CviAII CATG 3 cut(s) 429, 452, 533
DdeI CTNAG 2 cut(s) 102, 527
Eco47I GGWCC 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 411
FaeI CATG 3 cut(s) 432, 455, 536
FalI AAGNNNNNCTT 2 cut(s) 520, 552
FaqI GGGAC 2 cut(s) 69, 168
FatI CATG 3 cut(s) 428, 451, 532
FauI CCCGC 1 cut(s) 143
FauNDI CATATG 1 cut(s) 175
FblI GTMKAC 1 cut(s) 107
FokI GGATG 1 cut(s) 113
FspBI CTAG 5 cut(s) 44, 62, 210, 458, 575
GsaI CCCAGC 1 cut(s) 31
HaeIII GGCC 2 cut(s) 83, 180
Hin1II CATG 3 cut(s) 432, 455, 536
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 3 cut(s) 57, 134, 206
Hpy166II GTNNAC 2 cut(s) 108, 337
Hpy188I TCNGA 2 cut(s) 139, 490
Hpy8I GTNNAC 2 cut(s) 108, 337
HpyAV CCTTC 3 cut(s) 191, 388, 546
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4IV ACGT 2 cut(s) 88, 239
HpyCH4V TGCA 4 cut(s) 37, 380, 386, 466
HpyF10VI GCNNNNNNNGC 2 cut(s) 454, 463
HpyF3I CTNAG 2 cut(s) 102, 527
HpySE526I ACGT 2 cut(s) 88, 239
Hsp92II CATG 3 cut(s) 432, 455, 536
LmnI GCTCC 1 cut(s) 555
LpnPI CCDG 5 cut(s) 13, 114, 144, 294, 489
LweI GCATC 1 cut(s) 457
MaeI CTAG 5 cut(s) 44, 62, 210, 458, 575
MaeII ACGT 2 cut(s) 88, 239
MboII GAAGA 2 cut(s) 523, 526
MfeI CAATTG 1 cut(s) 22
MluCI AATT 5 cut(s) 22, 38, 364, 389, 473
MlyI GAGTC 2 cut(s) 51, 200
MnlI CCTC 3 cut(s) 77, 220, 432
MseI TTAA 2 cut(s) 236, 522
MunI CAATTG 1 cut(s) 22
Mva1269I GAATGC 1 cut(s) 382
MwoI GCNNNNNNNGC 2 cut(s) 454, 463
NdeI CATATG 1 cut(s) 175
NlaIII CATG 3 cut(s) 432, 455, 536
NlaIV GGNNCC 2 cut(s) 99, 253
PctI GAATGC 1 cut(s) 382
PfeI GAWTC 1 cut(s) 134
PflMI CCANNNNNTGG 1 cut(s) 546
PleI GAGTC 2 cut(s) 51, 200
PpsI GAGTC 2 cut(s) 51, 200
Psp1406I AACGTT 1 cut(s) 239
PspFI CCCAGC 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 99, 253
PspPI GGNCC 1 cut(s) 252
PstI CTGCAG 1 cut(s) 388
PstNI CAGNNNCTG 1 cut(s) 137
SaqAI TTAA 2 cut(s) 236, 522
Sau96I GGNCC 1 cut(s) 252
SchI GAGTC 2 cut(s) 51, 200
SfaNI GCATC 1 cut(s) 457
SfcI CTRYAG 1 cut(s) 384
SinI GGWCC 1 cut(s) 252
Sse9I AATT 5 cut(s) 22, 38, 364, 389, 473
SsiI CCGC 1 cut(s) 150
SspMI CTAG 5 cut(s) 44, 62, 210, 458, 575
TaaI ACNGT 1 cut(s) 470
TaiI ACGT 2 cut(s) 91, 242
TasI AATT 5 cut(s) 22, 38, 364, 389, 473
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 2 cut(s) 236, 522
Tru9I TTAA 2 cut(s) 236, 522
Van91I CCANNNNNTGG 1 cut(s) 546
VpaK11BI GGWCC 1 cut(s) 252
XmiI GTMKAC 1 cut(s) 107
XspI CTAG 5 cut(s) 44, 62, 210, 458, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.