Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8237107.1

Orthogroup ID

OG0006390

Physical Location & Seq

Genomic Coordinates Reverse (-)

137 .. 715

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8237107.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgtgcgaaagcgaaaacaagcatttctatgtgtgtgtcttagaaattttggccctttggggtcttctggccttaattctttggctaagtttacgcccaaagtccccttgttataccattgtggatatcaccattccaaattctgatatagagaatggggcacagaatggctctattgtgtatgttcttgagattgaaaactctaacaaagactccagtgttttttatgatacctcagtcttgacgttctattatgggcaggataaagttgcagagaaaaccatacctccttttcatcaaggaagaagcaaaacccgtacggtgatggatgatattgatgccaatccacaggtgtggagatctgttcgcaattcaatatcgaatgcaactgcagagttgaaggtgactttgctaactaagattagatacaaaacatggggaatcaagagtaagcgtcacgggcaagacttgcaaggtgcattaccaataggtaaagacggcaagctttctggtaagaagaagaaaatcaagctaaaccatgcttccaagaaactgaggaggaatagtcttagattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

192

Amino Acids

21.78

Weight (kDa)

9.66

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006390)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02720
malus_domestica	MD05G1340600.v1.1 MD10G1314100.v1.1
prunus_persica	Prupe.4G026900_v2.0.a1 Prupe.4G027000_v2.0.a1
pyrus_communis	pycom05g30980
rosa_chinensis	RchiOBHm_Chr5g0004101 RchiOBHm_Chr5g0004121
rosa_laevigata	RLG00000031202 RLG00000031203
rosa_multiflora	Rmu_co8237107.1_g000001 Rmu_sc0000547.1_g000032 Rmu_sc0000547.1_g000035 Rmu_sc0000547.1_g000036
rosa_roxburghii	Rroxscaffold_1G00071910 Rroxscaffold_1G00071920
rosa_rugosa	Rorug04G0410300 Rorug04G0410400
rosa_samantha	Rh5AG037500 Rh5BG036600 Rh5BG036700 Rh5BG036800 Rh5CG040200 Rh5DG036100 Rh5DG036200
rosa_wichuraiana	Rw5G003390 Rw5G003570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	45, 139
AfaI	GTAC	1 cut(s)	319
AgsI	TTSAA	3 cut(s)	197, 375, 400
AleI	CACNNNNGTG	1 cut(s)	352
AluBI	AGCT	2 cut(s)	505, 532
AluI	AGCT	2 cut(s)	505, 532
AoxI	GGCC	2 cut(s)	51, 69
ApoI	RAATTY	2 cut(s)	45, 139
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	3 cut(s)	121, 334, 415
BaeGI	GKGCMC	1 cut(s)	163
BaeI	ACNNNNGTAYC	2 cut(s)	222, 255
BbsI	GAAGAC	1 cut(s)	56
BccI	CCATC	1 cut(s)	319
BceAI	ACGGC	1 cut(s)	514
BfmI	CTRYAG	1 cut(s)	390
BglII	AGATCT	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	52
BmsI	GCATC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	342
BsaXI	ACNNNNNCTCC	5 cut(s)	197, 227, 271, 301, 550
Bse1I	ACTGG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	342
BseGI	GGATG	1 cut(s)	334
BseJI	GATNNNNATC	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	249, 545
BseNI	ACTGG	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	571
BseSI	GKGCMC	1 cut(s)	163
BshFI	GGCC	2 cut(s)	53, 71
BsiWI	CGTACG	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	2 cut(s)	53, 71
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	359
BspANI	GGCC	2 cut(s)	53, 71
BspCNI	CTCAG	2 cut(s)	248, 546
BspMAI	CTGCAG	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	216
BssMI	GATC	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	322
BstAPI	GCANNNNNTGC	1 cut(s)	469
BstC8I	GCNNGC	1 cut(s)	503
BstDEI	CTNAG	6 cut(s)	40, 86, 235, 417, 554, 569
BstF5I	GGATG	1 cut(s)	334
BstKTI	GATC	1 cut(s)	362
BstMBI	GATC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	2 cut(s)	460, 469
BstSFI	CTRYAG	1 cut(s)	390
BstSLI	GKGCMC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	359
BstXI	CCANNNNNNTGG	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	359
BsuRI	GGCC	2 cut(s)	53, 71
BtsCI	GGATG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	52
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	2 cut(s)	435, 539
CviJI	RGCY	6 cut(s)	53, 71, 85, 171, 505, 532
CviKI_1	RGCY	6 cut(s)	53, 71, 85, 171, 505, 532
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	6 cut(s)	40, 86, 235, 417, 554, 569
DpnI	GATC	1 cut(s)	361
DpnII	GATC	1 cut(s)	359
Eco32I	GATATC	1 cut(s)	127
EcoRV	GATATC	1 cut(s)	127
FaeI	CATG	2 cut(s)	438, 542
FaiI	YATR	9 cut(s)	30, 114, 149, 183, 228, 255, 284, 436, 540
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	2 cut(s)	434, 538
FokI	GGATG	1 cut(s)	341
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	2 cut(s)	53, 71
HgaI	GACGC	1 cut(s)	443
Hin1II	CATG	2 cut(s)	438, 542
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	2 cut(s)	212, 441
HphI	GGTGA	3 cut(s)	121, 334, 415
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	3 cut(s)	188, 241, 445
Hpy8I	GTNNAC	1 cut(s)	92
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	5 cut(s)	272, 386, 392, 472, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	460, 469
HpyF3I	CTNAG	6 cut(s)	40, 86, 235, 417, 554, 569
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	438, 542
Kzo9I	GATC	1 cut(s)	359
LpnPI	CCDG	5 cut(s)	53, 229, 245, 335, 495
LweI	GCATC	1 cut(s)	328
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	403, 455
MalI	GATC	1 cut(s)	361
MboI	GATC	1 cut(s)	359
MboII	GAAGA	4 cut(s)	56, 315, 529, 532
MflI	RGATCY	1 cut(s)	359
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	4 cut(s)	45, 75, 139, 370
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	4 cut(s)	244, 297, 549, 552
MseI	TTAA	1 cut(s)	74
MslI	CAYNNNNRTG	2 cut(s)	27, 352
Mva1269I	GAATGC	1 cut(s)	388
MwoI	GCNNNNNNNGC	2 cut(s)	460, 469
NdeII	GATC	1 cut(s)	359
NlaIII	CATG	2 cut(s)	438, 542
NmuCI	GTSAC	2 cut(s)	403, 455
OliI	CACNNNNGTG	1 cut(s)	352
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	441
Pfl23II	CGTACG	1 cut(s)	317
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PspLI	CGTACG	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	52
PstI	CTGCAG	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	359
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
RseI	CAYNNNNRTG	2 cut(s)	27, 352
SaqAI	TTAA	1 cut(s)	74
Sau3AI	GATC	1 cut(s)	359
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	9 cut(s)	236, 248, 289, 354, 405, 478, 493, 507, 534
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	390
SmiMI	CAYNNNNRTG	2 cut(s)	27, 352
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	4 cut(s)	45, 75, 139, 370
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	1 cut(s)	380
TasI	AATT	4 cut(s)	45, 75, 139, 370
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	2 cut(s)	403, 455
Tsp45I	GTSAC	2 cut(s)	403, 455
TspDTI	ATGAA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	223
XapI	RAATTY	2 cut(s)	45, 139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.