Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011533

Physical Location & Seq

Genomic Coordinates Reverse (-)

2202893 .. 2205067

Gene Structure 2175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g03940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGAGAATGTCAACTTCAATTCCCAGACCTGGAACCAACACCGTCGGTCCCGACTTCGATGATGATATCATTGTTGAGATACTCTTAAAGCTACCGGCCAAATCCCTACTACGTTTTCGCTGCGTTTGCAAGTCATGGCGTGCTTTGATCTCCGACCCCTCTTTTGTCCGGAACCACCTTCGCAGAGTCAACACCAACCACTTCAACCTCCTTGTAGGAACCAGGTGGTTTTCCCAAGCTGATGTAATATCTAAGCAAGATGATGGTGGCATTGCAATCACAGAGCTTGATTATCCGGTAACGTTCTCCGATCCCGGTTGCTTTATGATCTATGGCTCTTGCAATGGCTTGGTGTGTGCAGGATTTGAAAACGGTAACATCATAATATGGAACCCTTTGACTAGAGAATTCAAGCAGCTACCGCAACCTGAAGGTGGTAGTACTCATCTCGAGGGTGATAGGTATGTAGCTCTTGCTGGATTCGGTTATGATTCCACCATAGAAGACTACAAGGTAATACGAGTTACTAGAGTATTTGATTATGATACCACCCTTCAGGTGTTTACACTCAAAACCGGGTCATGGAGGACCAATCTGGAGTTCAATCATATTAGGCTGAGATATTACAACACGCGTTCACAGACGCCGGGTTTCTTATTAAACGAAACCCTACATTGGGTTGCCAAATTAAGGGGGTCAGAGTATGAGGAAGGTACTATGGGAATAGTGACTATTGGTCTCGCGGACGAGAGGTTTCAGGTGATGGCTCTACTTCCCTGCCGTCATTCTAACTGCCCGATATCCAGTTCAATCGTGATGTCGGGAAATTCTTTACTTGTATCTCACGAGTTTAGTATATGGATGATGAAGGAATATGGAGTAGAAGAGTCTTGGACCGAAGTCATATACATTTACCCCGAGGATTTACCTCAAGGTTTCAGTTTTTACTTGGCACCTATATGCATTTTGGATAATGGGGAAGTTCTTCTGAATTGTAGAAAAGACTTGGGATTGTATGATCCGGAGAGAGAGAGATATAGAAATGTGATTTGGACTTGCGAGGTGCCTTGTCCTCTTTATGTGTCTTATGTTGAGACTTTAATTTCACCACAAAACGGCATTTGTGAAAGTGAAAATAACATAGCAAGCACACTGGAGAACAAGGGTGCAAGAATGGAGGTTTTGTCCTTCAACATACCAGCTCCTTCGGGTTGGAGTAAGAAAGGTCGCAAGACAAAAAGAGGTAGATGGAGCCATCAACGTAGATCAAATTCAACACCTTGCCTAAATATTCATTCACAACTTGCACCTACCAACTCGAACGATCCCTCATCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

447

Amino Acids

50.62

Weight (kDa)

6.18

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	18 - 56	5.3e-11	F-box domain
F-box-like	PF12937	21 - 59	1.8e-08	F-box-like
FBA_3	PF08268	97 - 349	9.2e-19	F-box associated beta propeller domain
FBA_1	PF07734	112 - 368	1.2e-21	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03940
rosa_chinensis	RchiOBHm_Chr5g0006261 RchiOBHm_Chr5g0006271
rosa_laevigata	RLG00000031369 RLG00000031370 RLG00000031371
rosa_multiflora	Rmu_sc0002867.1_g000005 Rmu_sc0009371.1_g000001 Rmu_sc0037517.1_g000001 Rmu_sc0037517.1_g000002 Rmu_sc0037517.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069740 Rroxscaffold_1G00069760 Rroxscaffold_1G00069770 Rroxscaffold_1G00069780
rosa_rugosa	Rorug04G0419900 Rorug04G0420000
rosa_samantha	Rh5BG047300 Rh5BG047500
rosa_wichuraiana	Rw5G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	952, 1063
AccII	CGCG	2 cut(s)	634, 743
AccIII	TCCGGA	2 cut(s)	168, 1021
AciI	CCGC	2 cut(s)	422, 743
AclI	AACGTT	1 cut(s)	302
AclWI	GGATC	3 cut(s)	305, 1013, 1319
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	3 cut(s)	407, 826, 1270
AcuI	CTGAAG	2 cut(s)	450, 539
AcyI	GRCGYC	1 cut(s)	644
AfaI	GTAC	2 cut(s)	442, 715
AfiI	CCNNNNNNNGG	7 cut(s)	29, 434, 582, 675, 676, 690, 1115
AflIII	ACRYGT	1 cut(s)	632
AgsI	TTSAA	8 cut(s)	18, 205, 368, 412, 604, 810, 1192, 1275
AhdI	GACNNNNNGTC	1 cut(s)	735
AjnI	CCWGG	2 cut(s)	28, 221
AjuI	GAANNNNNNNTTGG	4 cut(s)	584, 616, 1033, 1065
AluBI	AGCT	6 cut(s)	91, 239, 286, 418, 470, 1202
AluI	AGCT	6 cut(s)	91, 239, 286, 418, 470, 1202
Alw26I	GTCTC	2 cut(s)	743, 1088
AlwI	GGATC	3 cut(s)	305, 1013, 1319
Ama87I	CYCGRG	2 cut(s)	449, 917
Aor13HI	TCCGGA	2 cut(s)	168, 1021
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	120, 415
ApoI	RAATTY	3 cut(s)	407, 826, 1270
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
Asp700I	GAANNNNTTC	1 cut(s)	984
AspS9I	GGNCC	3 cut(s)	47, 588, 894
AsuC2I	CCSGG	3 cut(s)	315, 577, 648
AsuHPI	GGTGA	3 cut(s)	467, 772, 1098
AvaI	CYCGRG	2 cut(s)	449, 917
AvaII	GGWCC	3 cut(s)	47, 588, 894
BanI	GGYRCC	2 cut(s)	952, 1063
BauI	CACGAG	1 cut(s)	845
BbsI	GAAGAC	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	107, 427
BccI	CCATC	4 cut(s)	257, 757, 1242, 1263
BceAI	ACGGC	2 cut(s)	765, 1132
BciT130I	CCWGG	2 cut(s)	30, 223
BcnI	CCSGG	3 cut(s)	315, 577, 648
BcoDI	GTCTC	2 cut(s)	743, 1088
BfaI	CTAG	2 cut(s)	402, 528
BisI	GCNGC	2 cut(s)	121, 416
BlsI	GCNGC	2 cut(s)	122, 417
BmcAI	AGTACT	1 cut(s)	442
Bme1390I	CCNGG	5 cut(s)	30, 223, 315, 577, 648
Bme18I	GGWCC	3 cut(s)	47, 588, 894
BmeRI	GACNNNNNGTC	1 cut(s)	735
BmeT110I	CYCGRG	2 cut(s)	449, 917
BmgT120I	GGNCC	3 cut(s)	47, 588, 894
BmiI	GGNNCC	8 cut(s)	34, 49, 173, 220, 392, 954, 1065, 1253
BmrFI	CCNGG	5 cut(s)	30, 223, 315, 577, 648
BoxI	GACNNNNGTC	1 cut(s)	899
BpiI	GAAGAC	1 cut(s)	510
BpmI	CTGGAG	2 cut(s)	617, 1175
BpuEI	CTTGAG	1 cut(s)	915
BpuMI	CCSGG	3 cut(s)	315, 577, 648
BsaHI	GRCGYC	1 cut(s)	644
BsaI	GGTCTC	1 cut(s)	743
BsaJI	CCNNGG	1 cut(s)	918
BsaWI	WCCGGW	3 cut(s)	168, 295, 1021
BsaXI	ACNNNNNCTCC	2 cut(s)	1169, 1199
Bsc4I	CCNNNNNNNGG	7 cut(s)	29, 434, 582, 675, 676, 690, 1115
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	804, 1158
Bse3DI	GCAATG	2 cut(s)	270, 349
BseAI	TCCGGA	2 cut(s)	168, 1021
BseBI	CCWGG	2 cut(s)	30, 223
BseDI	CCNNGG	1 cut(s)	918
BseGI	GGATG	1 cut(s)	867
BseLI	CCNNNNNNNGG	7 cut(s)	29, 434, 582, 675, 676, 690, 1115
BseMI	GCAATG	2 cut(s)	270, 349
BseMII	CTCAG	1 cut(s)	608
BseNI	ACTGG	2 cut(s)	804, 1158
BseXI	GCAGC	2 cut(s)	107, 427
BsgI	GTGCAG	1 cut(s)	378
Bsh1236I	CGCG	2 cut(s)	634, 743
BshFI	GGCC	1 cut(s)	98
BshNI	GGYRCC	2 cut(s)	952, 1063
BsiHKCI	CYCGRG	2 cut(s)	449, 917
BsiSI	CCGG	7 cut(s)	95, 169, 296, 315, 576, 647, 1022
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	7 cut(s)	29, 434, 582, 675, 676, 690, 1115
BsmAI	GTCTC	2 cut(s)	743, 1088
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	743
BsoBI	CYCGRG	2 cut(s)	449, 917
Bsp13I	TCCGGA	2 cut(s)	168, 1021
Bsp143I	GATC	6 cut(s)	147, 310, 327, 1018, 1265, 1324
BspACI	CCGC	2 cut(s)	422, 743
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	609
BspEI	TCCGGA	2 cut(s)	168, 1021
BspFNI	CGCG	2 cut(s)	634, 743
BspHI	TCATGA	1 cut(s)	1337
BspLI	GGNNCC	8 cut(s)	34, 49, 173, 220, 392, 954, 1065, 1253
BspPI	GGATC	3 cut(s)	305, 1013, 1319
BspT107I	GGYRCC	2 cut(s)	952, 1063
BspTNI	GGTCTC	1 cut(s)	743
BsrDI	GCAATG	2 cut(s)	270, 349
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	804, 1158
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	918
BssMI	GATC	6 cut(s)	147, 310, 327, 1018, 1265, 1324
BssNI	GRCGYC	1 cut(s)	644
BssSI	CACGAG	1 cut(s)	845
Bst2BI	CACGAG	1 cut(s)	845
Bst2UI	CCWGG	2 cut(s)	30, 223
Bst4CI	ACNGT	2 cut(s)	43, 374
Bst6I	CTCTTC	1 cut(s)	879
BstACI	GRCGYC	1 cut(s)	644
BstC8I	GCNNGC	2 cut(s)	141, 1147
BstDEI	CTNAG	2 cut(s)	252, 617
BstF5I	GGATG	1 cut(s)	867
BstFNI	CGCG	2 cut(s)	634, 743
BstKTI	GATC	6 cut(s)	150, 313, 330, 1021, 1268, 1327
BstMAI	GTCTC	2 cut(s)	743, 1088
BstMBI	GATC	6 cut(s)	147, 310, 327, 1018, 1265, 1324
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 421
BstNI	CCWGG	2 cut(s)	30, 223
BstPAI	GACNNNNGTC	1 cut(s)	899
BstSCI	CCNGG	5 cut(s)	28, 221, 313, 575, 646
BstUI	CGCG	2 cut(s)	634, 743
BstV1I	GCAGC	2 cut(s)	107, 427
BstV2I	GAAGAC	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	867
BtsIMutI	CAGTG	1 cut(s)	1151
Cac8I	GCNNGC	2 cut(s)	141, 1147
CciI	TCATGA	1 cut(s)	1337
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	3 cut(s)	47, 588, 894
CseI	GACGC	1 cut(s)	652
CsiI	ACCWGGT	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	441, 714
CviAII	CATG	3 cut(s)	135, 582, 1338
CviQI	GTAC	2 cut(s)	441, 714
DdeI	CTNAG	2 cut(s)	252, 617
DpnI	GATC	6 cut(s)	149, 312, 329, 1020, 1267, 1326
DpnII	GATC	6 cut(s)	147, 310, 327, 1018, 1265, 1324
DriI	GACNNNNNGTC	1 cut(s)	735
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	879
Eam1105I	GACNNNNNGTC	1 cut(s)	735
EarI	CTCTTC	1 cut(s)	879
Eco31I	GGTCTC	1 cut(s)	743
Eco32I	GATATC	2 cut(s)	67, 801
Eco47I	GGWCC	3 cut(s)	47, 588, 894
Eco57I	CTGAAG	2 cut(s)	450, 539
Eco88I	CYCGRG	2 cut(s)	449, 917
EcoRI	GAATTC	1 cut(s)	407
EcoRII	CCWGG	2 cut(s)	28, 221
EcoRV	GATATC	2 cut(s)	67, 801
EcoT22I	ATGCAT	1 cut(s)	965
FaeI	CATG	3 cut(s)	138, 585, 1341
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	3 cut(s)	134, 581, 1337
Fnu4HI	GCNGC	2 cut(s)	121, 416
FokI	GGATG	1 cut(s)	874
Fsp4HI	GCNGC	2 cut(s)	121, 416
FspBI	CTAG	2 cut(s)	402, 528
GluI	GCNGC	2 cut(s)	121, 416
GsuI	CTGGAG	2 cut(s)	617, 1175
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	7 cut(s)	95, 169, 296, 315, 576, 647, 1022
HgaI	GACGC	1 cut(s)	652
Hin1I	GRCGYC	1 cut(s)	644
Hin1II	CATG	3 cut(s)	138, 585, 1341
HincII	GTYRAC	2 cut(s)	12, 190
HindII	GTYRAC	2 cut(s)	12, 190
HinfI	GANTC	4 cut(s)	186, 480, 491, 887
HpaII	CCGG	7 cut(s)	95, 169, 296, 315, 576, 647, 1022
HphI	GGTGA	3 cut(s)	467, 772, 1098
Hpy166II	GTNNAC	4 cut(s)	12, 190, 564, 638
Hpy188I	TCNGA	4 cut(s)	154, 310, 700, 990
Hpy188III	TCNNGA	9 cut(s)	50, 169, 449, 596, 814, 822, 845, 1022, 1338
Hpy8I	GTNNAC	4 cut(s)	12, 190, 564, 638
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	7 cut(s)	188, 425, 563, 704, 862, 1198, 1215
HpyCH4III	ACNGT	2 cut(s)	43, 374
HpyCH4IV	ACGT	3 cut(s)	112, 302, 1261
HpyCH4V	TGCA	7 cut(s)	129, 275, 342, 359, 963, 1169, 1307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 421
HpyF3I	CTNAG	2 cut(s)	252, 617
HpySE526I	ACGT	3 cut(s)	112, 302, 1261
Hsp92I	GRCGYC	1 cut(s)	644
Hsp92II	CATG	3 cut(s)	138, 585, 1341
Kpn2I	TCCGGA	2 cut(s)	168, 1021
Kzo9I	GATC	6 cut(s)	147, 310, 327, 1018, 1265, 1324
LmnI	GCTCC	2 cut(s)	1207, 1251
Lsp1109I	GCAGC	2 cut(s)	107, 427
MabI	ACCWGGT	1 cut(s)	221
MaeI	CTAG	2 cut(s)	402, 528
MaeII	ACGT	3 cut(s)	112, 302, 1261
MaeIII	GTNAC	4 cut(s)	298, 374, 523, 727
MalI	GATC	6 cut(s)	149, 312, 329, 1020, 1267, 1326
MboI	GATC	6 cut(s)	147, 310, 327, 1018, 1265, 1324
MboII	GAAGA	4 cut(s)	515, 896, 977, 1326
MluCI	AATT	7 cut(s)	18, 407, 686, 826, 991, 1101, 1270
MluI	ACGCGT	1 cut(s)	632
MlyI	GAGTC	2 cut(s)	195, 896
MmeI	TCCRAC	2 cut(s)	177, 1193
Mph1103I	ATGCAT	1 cut(s)	965
MroI	TCCGGA	2 cut(s)	168, 1021
MroXI	GAANNNNTTC	1 cut(s)	984
MseI	TTAA	4 cut(s)	86, 659, 689, 1100
MslI	CAYNNNNRTG	2 cut(s)	958, 1336
MspI	CCGG	7 cut(s)	95, 169, 296, 315, 576, 647, 1022
MspR9I	CCNGG	5 cut(s)	30, 223, 315, 577, 648
MvaI	CCWGG	2 cut(s)	30, 223
MvnI	CGCG	2 cut(s)	634, 743
MwoI	GCNNNNNNNGC	2 cut(s)	126, 421
NciI	CCSGG	3 cut(s)	315, 577, 648
NdeII	GATC	6 cut(s)	147, 310, 327, 1018, 1265, 1324
NlaIII	CATG	3 cut(s)	138, 585, 1341
NlaIV	GGNNCC	8 cut(s)	34, 49, 173, 220, 392, 954, 1065, 1253
NmuCI	GTSAC	1 cut(s)	727
NsiI	ATGCAT	1 cut(s)	965
PaeR7I	CTCGAG	1 cut(s)	449
PagI	TCATGA	1 cut(s)	1337
PdmI	GAANNNNTTC	1 cut(s)	984
PfeI	GAWTC	2 cut(s)	480, 491
PkrI	GCNGC	2 cut(s)	122, 417
PleI	GAGTC	2 cut(s)	194, 895
PpsI	GAGTC	2 cut(s)	194, 895
PshAI	GACNNNNGTC	1 cut(s)	899
Psp1406I	AACGTT	1 cut(s)	302
Psp6I	CCWGG	2 cut(s)	28, 221
PspGI	CCWGG	2 cut(s)	28, 221
PspN4I	GGNNCC	8 cut(s)	34, 49, 173, 220, 392, 954, 1065, 1253
PspPI	GGNCC	3 cut(s)	47, 588, 894
RsaI	GTAC	2 cut(s)	442, 715
RsaNI	GTAC	2 cut(s)	441, 714
RseI	CAYNNNNRTG	2 cut(s)	958, 1336
SaqAI	TTAA	4 cut(s)	86, 659, 689, 1100
SatI	GCNGC	2 cut(s)	121, 416
Sau3AI	GATC	6 cut(s)	147, 310, 327, 1018, 1265, 1324
Sau96I	GGNCC	3 cut(s)	47, 588, 894
ScaI	AGTACT	1 cut(s)	442
SchI	GAGTC	2 cut(s)	195, 896
ScrFI	CCNGG	5 cut(s)	30, 223, 315, 577, 648
SexAI	ACCWGGT	1 cut(s)	221
Sfr274I	CTCGAG	1 cut(s)	449
SinI	GGWCC	3 cut(s)	47, 588, 894
SlaI	CTCGAG	1 cut(s)	449
SmiMI	CAYNNNNRTG	2 cut(s)	958, 1336
SmlI	CTYRAG	2 cut(s)	449, 930
SmoI	CTYRAG	2 cut(s)	449, 930
Sse9I	AATT	7 cut(s)	18, 407, 686, 826, 991, 1101, 1270
SsiI	CCGC	2 cut(s)	422, 743
SspI	AATATT	1 cut(s)	1291
SspMI	CTAG	2 cut(s)	402, 528
StyD4I	CCNGG	5 cut(s)	28, 221, 313, 575, 646
TaaI	ACNGT	2 cut(s)	43, 374
TaiI	ACGT	3 cut(s)	115, 305, 1264
TaqI	TCGA	3 cut(s)	57, 450, 1319
TaqII	GACCGA	2 cut(s)	35, 911
TasI	AATT	7 cut(s)	18, 407, 686, 826, 991, 1101, 1270
TatI	WGTACW	1 cut(s)	440
TfiI	GAWTC	2 cut(s)	480, 491
Tru1I	TTAA	4 cut(s)	86, 659, 689, 1100
Tru9I	TTAA	4 cut(s)	86, 659, 689, 1100
TscAI	CASTG	1 cut(s)	1158
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	2 cut(s)	120, 415
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	3 cut(s)	881, 1283, 1326
TspRI	CASTG	1 cut(s)	1158
VpaK11BI	GGWCC	3 cut(s)	47, 588, 894
XapI	RAATTY	3 cut(s)	407, 826, 1270
XhoI	CTCGAG	1 cut(s)	449
XmnI	GAANNNNTTC	1 cut(s)	984
XspI	CTAG	2 cut(s)	402, 528
ZrmI	AGTACT	1 cut(s)	442
Zsp2I	ATGCAT	1 cut(s)	965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.