Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011533

Physical Location & Seq

Genomic Coordinates Forward (+)

4453493 .. 4455085

Gene Structure 1593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031369

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGTTCTTGTAATGGCTTTGATATGTGTAGAGTTTGAAAACGGTAACATCATAATATGGAACCCTTCGACTAGAGAATTCAAGCAGCTACCGGAACCTGAAGGTGAAAGTGAAATGGCAAGCAGAGTGGAGAACAAGGGTGCAAGAATGGAGATTTTGTCCTTCAAACTACGAGCTCCGATCCTTCAGGTTGGAGTAAGAAAGTCAGCGCTTGCACGTTCCTTCCTCGTTGCCTCCTTCGAATCTCAAACCATTGACTTTGAGGGTGCAAGTTTTCAAAGCTTGCAACACAAGAATGTTGCCCCTTCTCTCTTCATTCTATCTTTCTACATGAAAAACAAAACTCAAATCTCACACCCCAAACATGGCCGGCAACGCCAGACGGATTCGGCTCCAGCAACAACCATAGTCGATCTTGACTTCGATCATGACATCATTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.55

Weight (kDa)

6.42

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03940
rosa_chinensis	RchiOBHm_Chr5g0006261 RchiOBHm_Chr5g0006271
rosa_laevigata	RLG00000031369 RLG00000031370 RLG00000031371
rosa_multiflora	Rmu_sc0002867.1_g000005 Rmu_sc0009371.1_g000001 Rmu_sc0037517.1_g000001 Rmu_sc0037517.1_g000002 Rmu_sc0037517.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069740 Rroxscaffold_1G00069760 Rroxscaffold_1G00069770 Rroxscaffold_1G00069780
rosa_rugosa	Rorug04G0419900 Rorug04G0420000
rosa_samantha	Rh5BG047300 Rh5BG047500
rosa_wichuraiana	Rw5G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	2 cut(s)	120, 170
AfeI	AGCGCT	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	4 cut(s)	38, 82, 166, 278
AluBI	AGCT	3 cut(s)	88, 176, 282
AluI	AGCT	3 cut(s)	88, 176, 282
Alw21I	GWGCWC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	175
Aor51HI	AGCGCT	1 cut(s)	210
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	116
AsuII	TTCGAA	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	97
BfaI	CTAG	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	212
BisI	GCNGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	87
BmiI	GGNNCC	3 cut(s)	62, 96, 393
BpmI	CTGGAG	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse118I	RCCGGY	1 cut(s)	369
Bse3DI	GCAATG	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMI	GCAATG	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	2 cut(s)	92, 370
BslI	CCNNNNNNNGG	1 cut(s)	365
BsnI	GGCC	1 cut(s)	369
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	3 cut(s)	180, 412, 424
BspANI	GGCC	1 cut(s)	369
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	3 cut(s)	62, 96, 393
BspPI	GGATC	1 cut(s)	175
BspT104I	TTCGAA	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	435
BsrFI	RCCGGY	1 cut(s)	369
BssAI	RCCGGY	1 cut(s)	369
BssMI	GATC	3 cut(s)	180, 412, 424
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	317
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	4 cut(s)	121, 213, 284, 371
BstDEI	CTNAG	1 cut(s)	441
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	3 cut(s)	183, 415, 427
BstMBI	GATC	3 cut(s)	180, 412, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	369
Cac8I	GCNNGC	4 cut(s)	121, 213, 284, 371
CciI	TCATGA	1 cut(s)	427
CfoI	GCGC	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	369
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	3 cut(s)	331, 365, 428
CviJI	RGCY	6 cut(s)	17, 88, 176, 282, 369, 392
CviKI_1	RGCY	6 cut(s)	17, 88, 176, 282, 369, 392
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	3 cut(s)	182, 414, 426
DpnII	GATC	3 cut(s)	180, 412, 424
EaeI	YGGCCR	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Ecl136II	GAGCTC	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	178
Eco47III	AGCGCT	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	176
Eco57I	CTGAAG	2 cut(s)	120, 170
EcoICRI	GAGCTC	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	3 cut(s)	334, 368, 431
FaiI	YATR	7 cut(s)	25, 53, 58, 332, 366, 407, 429
FatI	CATG	3 cut(s)	330, 364, 427
Fnu4HI	GCNGC	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	86
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	1 cut(s)	86
GsuI	CTGGAG	1 cut(s)	378
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	2 cut(s)	92, 370
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	3 cut(s)	334, 368, 431
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	2 cut(s)	242, 386
HpaII	CCGG	2 cut(s)	92, 370
HphI	GGTGA	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	2 cut(s)	416, 428
HpyAV	CCTTC	7 cut(s)	75, 95, 172, 194, 232, 247, 315
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	4 cut(s)	143, 215, 269, 286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	3 cut(s)	334, 368, 431
HspAI	GCGC	1 cut(s)	209
KroI	GCCGGC	1 cut(s)	369
KroNI	GCCGGC	1 cut(s)	371
Kzo9I	GATC	3 cut(s)	180, 412, 424
LmnI	GCTCC	2 cut(s)	181, 397
LpnPI	CCDG	6 cut(s)	105, 111, 173, 383, 392, 408
Lsp1109I	GCAGC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	3 cut(s)	182, 414, 426
MboI	GATC	3 cut(s)	180, 412, 424
MboII	GAAGA	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	3 cut(s)	236, 244, 256
MroNI	GCCGGC	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	2 cut(s)	92, 370
MwoI	GCNNNNNNNGC	1 cut(s)	375
NaeI	GCCGGC	1 cut(s)	371
NdeII	GATC	3 cut(s)	180, 412, 424
NgoMIV	GCCGGC	1 cut(s)	369
NlaIII	CATG	3 cut(s)	334, 368, 431
NlaIV	GGNNCC	3 cut(s)	62, 96, 393
NspV	TTCGAA	1 cut(s)	240
PagI	TCATGA	1 cut(s)	427
PdiI	GCCGGC	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	242, 386
PkrI	GCNGC	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	178
PspN4I	GGNNCC	3 cut(s)	62, 96, 393
RseI	CAYNNNNRTG	1 cut(s)	294
SacI	GAGCTC	1 cut(s)	178
SatI	GCNGC	1 cut(s)	86
Sau3AI	GATC	3 cut(s)	180, 412, 424
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	7 cut(s)	90, 100, 106, 178, 192, 220, 284
SfuI	TTCGAA	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	294
Sse9I	AATT	1 cut(s)	77
SspMI	CTAG	1 cut(s)	72
SstI	GAGCTC	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	4 cut(s)	68, 240, 411, 423
TasI	AATT	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	242, 386
TseI	GCWGC	1 cut(s)	85
TspDTI	ATGAA	2 cut(s)	304, 347
TspGWI	ACGGA	1 cut(s)	398
XapI	RAATTY	1 cut(s)	77
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.