RLG00000031370

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011533
Physical Location & Seq
Forward (+)
4455302 .. 4459391
4090 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031370

Sequence Viewer

Length: 585 bp
ATGCATGACTTTGAAGGTGAATGTTTTCCAAATATCTATGGTTCTTGCAATGGCTTGATTTGTATAGAATTTGGAAGCGATAGCATCATATTATGGAACCCTTGCACTAGAGAGTTCAAGCAGCTACCAGAACCTGAACTTCATATTTGTGAAAGTGCAAGCATCTTTGAGAGTTTCGTATATCTTGCTGGATTCGGTTATGATTCCACCATCGAAGATTACAAGGGTTTCTTGTTAAAAGAAACTCTACATTGGGTAGCCCTTCTAAGAGGAGCAGAGTATGAGGAAGGTGCTTTGGGAATAGTGTCTTTAGGTCTTGCGGAGGAGAAATTTAAGGTCATGGCGTTATTCCCCTGTCACTCCCCTATATCTGCTTCAATCTTGACTGTTGGGAACTCTTTTTCGAATTCAGTAGGTGAAAGTGAAAGGGCAAGCAAAGTGGAGAACAAGGGTGCAAAACTGGAAGTTCTGTCCTTGATGGCTCCTCCGGGTTGGAGTAAGAAAGGAGAAAAAGGCAAAGACCGAAGCCAACATCCTAGATCAAATCCAGCACCTACTGGCTCAAACCATCCACCATCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like FBA_1

Protein Analysis

195

Amino Acids

21.22

Weight (kDa)

5.26

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 7 - 114 1.9e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 320
AcsI RAATTY 3 cut(s) 68, 329, 406
AgsI TTSAA 3 cut(s) 14, 118, 378
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
AlwNI CAGNNNCTG 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 121
ApoI RAATTY 3 cut(s) 68, 329, 406
Asp700I GAANNNNTTC 1 cut(s) 24
AsuC2I CCSGG 1 cut(s) 489
AsuHPI GGTGA 2 cut(s) 29, 428
AsuII TTCGAA 1 cut(s) 404
BbvI GCAGC 1 cut(s) 133
BccI CCATC 4 cut(s) 218, 472, 576, 583
BcnI CCSGG 1 cut(s) 489
BfaI CTAG 2 cut(s) 108, 537
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
Bme1390I CCNGG 1 cut(s) 489
BmiI GGNNCC 2 cut(s) 98, 483
BmrFI CCNGG 1 cut(s) 489
BmsI GCATC 2 cut(s) 93, 171
Bpu14I TTCGAA 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 489
Bse1I ACTGG 2 cut(s) 465, 562
Bse3DI GCAATG 1 cut(s) 55
BseGI GGATG 2 cut(s) 532, 568
BseMI GCAATG 1 cut(s) 55
BseNI ACTGG 2 cut(s) 465, 562
BseRI GAGGAG 3 cut(s) 285, 338, 474
BseXI GCAGC 1 cut(s) 133
BsiSI CCGG 1 cut(s) 488
Bsp119I TTCGAA 1 cut(s) 404
Bsp143I GATC 1 cut(s) 539
BspACI CCGC 1 cut(s) 320
BspHI TCATGA 1 cut(s) 581
BspLI GGNNCC 2 cut(s) 98, 483
BspT104I TTCGAA 1 cut(s) 404
BsrDI GCAATG 1 cut(s) 55
BsrI ACTGG 2 cut(s) 465, 562
BssMI GATC 1 cut(s) 539
Bst4CI ACNGT 1 cut(s) 388
BstBI TTCGAA 1 cut(s) 404
BstC8I GCNNGC 2 cut(s) 160, 433
BstDEI CTNAG 1 cut(s) 266
BstF5I GGATG 2 cut(s) 532, 568
BstKTI GATC 1 cut(s) 542
BstMBI GATC 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 487
BstV1I GCAGC 1 cut(s) 133
BtsCI GGATG 2 cut(s) 532, 568
Cac8I GCNNGC 2 cut(s) 160, 433
CaiI CAGNNNCTG 1 cut(s) 134
CciI TCATGA 1 cut(s) 581
CspCI CAANNNNNGTGG 2 cut(s) 420, 455
CviAII CATG 3 cut(s) 5, 340, 582
CviJI RGCY 6 cut(s) 54, 124, 260, 482, 528, 561
CviKI_1 RGCY 6 cut(s) 54, 124, 260, 482, 528, 561
DdeI CTNAG 1 cut(s) 266
DpnI GATC 1 cut(s) 541
DpnII GATC 1 cut(s) 539
EcoRI GAATTC 1 cut(s) 406
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 343, 585
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 3 cut(s) 4, 339, 581
Fnu4HI GCNGC 1 cut(s) 122
FokI GGATG 2 cut(s) 519, 555
Fsp4HI GCNGC 1 cut(s) 122
FspBI CTAG 2 cut(s) 108, 537
GluI GCNGC 1 cut(s) 122
HapII CCGG 1 cut(s) 488
Hin1II CATG 3 cut(s) 8, 343, 585
HinfI GANTC 2 cut(s) 192, 203
HpaII CCGG 1 cut(s) 488
HphI GGTGA 2 cut(s) 29, 428
Hpy188III TCNNGA 2 cut(s) 382, 582
HpyAV CCTTC 3 cut(s) 8, 272, 281
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4V TGCA 5 cut(s) 4, 48, 105, 158, 455
HpyF3I CTNAG 1 cut(s) 266
Hsp92II CATG 3 cut(s) 8, 343, 585
Kzo9I GATC 1 cut(s) 539
LmnI GCTCC 2 cut(s) 272, 487
LpnPI CCDG 8 cut(s) 141, 147, 174, 367, 446, 501, 543, 561
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 2 cut(s) 93, 171
MaeI CTAG 2 cut(s) 108, 537
MaeIII GTNAC 1 cut(s) 356
MalI GATC 1 cut(s) 541
MboI GATC 1 cut(s) 539
MboII GAAGA 2 cut(s) 227, 570
MluCI AATT 3 cut(s) 68, 329, 406
MmeI TCCRAC 1 cut(s) 473
MnlI CCTC 4 cut(s) 263, 277, 316, 495
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 2 cut(s) 236, 333
MslI CAYNNNNRTG 2 cut(s) 147, 580
MspI CCGG 1 cut(s) 488
MspR9I CCNGG 1 cut(s) 489
NciI CCSGG 1 cut(s) 489
NdeII GATC 1 cut(s) 539
NlaIII CATG 3 cut(s) 8, 343, 585
NlaIV GGNNCC 2 cut(s) 98, 483
NmuCI GTSAC 1 cut(s) 356
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 404
PagI TCATGA 1 cut(s) 581
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 192, 203
PkrI GCNGC 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 98, 483
PstNI CAGNNNCTG 1 cut(s) 134
RseI CAYNNNNRTG 2 cut(s) 147, 580
SaqAI TTAA 2 cut(s) 236, 333
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 1 cut(s) 539
ScrFI CCNGG 1 cut(s) 489
SetI ASST 8 cut(s) 19, 126, 136, 292, 316, 339, 418, 556
SfaNI GCATC 2 cut(s) 93, 171
SfuI TTCGAA 1 cut(s) 404
SmiMI CAYNNNNRTG 2 cut(s) 147, 580
Sse9I AATT 3 cut(s) 68, 329, 406
SsiI CCGC 1 cut(s) 320
SspMI CTAG 2 cut(s) 108, 537
StyD4I CCNGG 1 cut(s) 487
TaaI ACNGT 1 cut(s) 388
TaqI TCGA 2 cut(s) 213, 404
TaqII GACCGA 1 cut(s) 537
TasI AATT 3 cut(s) 68, 329, 406
TfiI GAWTC 2 cut(s) 192, 203
Tru1I TTAA 2 cut(s) 236, 333
Tru9I TTAA 2 cut(s) 236, 333
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 2 cut(s) 131, 570
XapI RAATTY 3 cut(s) 68, 329, 406
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 2 cut(s) 108, 537
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.