Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011533

Physical Location & Seq

Genomic Coordinates Reverse (-)

3899998 .. 3902260

Gene Structure 2263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28739

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGCCGGCGAGCCGGATTCAGCTCCACAAACAAACACAGTCAGTCCTGAGTTCGATGATGACAGCATTGCTGAGATAGTGTCAAGGCTGCCGGCCAAATCTCTACTTCGATTTCGCTGCGTACGCAAGTCATGGCGTGCTTTGATCTCCAATCCCTCTTTTGTTAAGCAACACCTGAGCAAAGTCAACACTAACCACCGCTTCAACCTCCTCGTCGGAACAAGGCCTTCCCAAGCTTCTGTAGTGAAGGTAGATGATGATGGTGACGTTGCAGTCACACAAGAGCTCAAGTATCCGGTAACGTCTGACTTTCCTGACTTTTTTCCTGTGATCTATGGTTCTTGCAATGGCTTGATTTGTATGGAGTTTGAAATGGGTAACATCATATTATGGAACCCTTGTACTAGAGAGTTCAAGCAGCTACCGCAACCTGAACTTGATGGTAGAGAATATGACTTTGTGAGTTTCGTATGTTTTGCTGGTTTTGGTTATGATTCCACCATTGCAGATTTCAAGGTAATACGAGCCACTAAAATATATGAAAAGCCAACCACACTTCAGGTATTTACACTCAAAACGGGTTCATGGAGAACCATTACAGATTTCAATCGTATTAGGGAAGAGAGTGAGTGCATCATTCTGCGAGAAAAGCAGGGCTTCTTACTAAACGAAACTCTACATTGGGTAGCCCTTCTAAGCGGGGCAGAGTATGAGGAAGGTACTTTGGGAATAGTGTCTATTGGTCTCGCGGAGGAGAAATTTCAAGTGATGGCACTACTCCCCTGTGGTCGCCCTGCTCCCAATAGCCCCGTATCTACTTCAGTTGTGATGGTTGGGAATTCGTTGTTTGTATACCATGAATTTGGTATATGGTTGATGAAGGAATATGGGGTAGAGGAATCTTGGACCGAAGTTGCATGCATTTCCCCAGTGGTTTTACCTGATCAACATTTTAACAGCATGTTGACACCTTTATGCATTTGTGACAATGGTGAAGTTCTTCTCAATCATAGACAAGCCTTGGGAGTATATAATCCGGAAGGAAAGACATTTAGAAGTGTCACTTGGAATTGCGAGGAGTATTCTCCTCAGTGTGTTGCTTATGTGGAGACTTTAGTTTCACCATTGAACTGCATTGGCGGAACCGCGCAAGTGAAAGTGGAGAACAAGGGTGCAAAAATGGAGCTTCTATCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

399

Amino Acids

44.69

Weight (kDa)

5.01

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	19 - 55	3.3e-06	F-box domain
FBA_3	PF08268	92 - 356	1.3e-16	F-box associated beta propeller domain
FBA_1	PF07734	107 - 374	3.8e-21	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03940
rosa_chinensis	RchiOBHm_Chr5g0006261 RchiOBHm_Chr5g0006271
rosa_laevigata	RLG00000031369 RLG00000031370 RLG00000031371
rosa_multiflora	Rmu_sc0002867.1_g000005 Rmu_sc0009371.1_g000001 Rmu_sc0037517.1_g000001 Rmu_sc0037517.1_g000002 Rmu_sc0037517.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069740 Rroxscaffold_1G00069760 Rroxscaffold_1G00069770 Rroxscaffold_1G00069780
rosa_rugosa	Rorug04G0419900 Rorug04G0420000
rosa_samantha	Rh5BG047300 Rh5BG047500
rosa_wichuraiana	Rw5G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1198
AasI	GACNNNNNNGTC	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	852
AccII	CGCG	2 cut(s)	749, 1148
AccIII	TCCGGA	1 cut(s)	1036
AciI	CCGC	6 cut(s)	199, 425, 699, 749, 1140, 1146
AcoI	YGGCCR	2 cut(s)	3, 93
AcsI	RAATTY	3 cut(s)	758, 838, 860
AcuI	CTGAAG	2 cut(s)	542, 804
AfaI	GTAC	3 cut(s)	123, 403, 721
AgsI	TTSAA	7 cut(s)	205, 371, 415, 514, 607, 764, 1129
AjuI	GAANNNNNNNTTGG	2 cut(s)	1048, 1080
AluBI	AGCT	5 cut(s)	23, 236, 286, 421, 1186
AluI	AGCT	5 cut(s)	23, 236, 286, 421, 1186
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	749, 1103
Aor13HI	TCCGGA	1 cut(s)	1036
AoxI	GGCC	3 cut(s)	3, 93, 224
ApeKI	GCWGC	3 cut(s)	88, 117, 418
ApoI	RAATTY	3 cut(s)	758, 838, 860
Asp700I	GAANNNNTTC	1 cut(s)	999
AspLEI	GCGC	1 cut(s)	1150
AspS9I	GGNCC	1 cut(s)	906
AsuHPI	GGTGA	3 cut(s)	275, 1004, 1113
AvaII	GGWCC	1 cut(s)	906
BanII	GRGCYC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	75, 104, 430
BccI	CCATC	4 cut(s)	254, 434, 763, 823
BcgI	CGANNNNNNTGC	2 cut(s)	99, 133
BciVI	GTATCC	1 cut(s)	303
BclI	TGATCA	1 cut(s)	943
BcoDI	GTCTC	2 cut(s)	749, 1103
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	303
BisI	GCNGC	3 cut(s)	89, 118, 419
BlsI	GCNGC	3 cut(s)	90, 119, 420
Bme18I	GGWCC	1 cut(s)	906
BmgT120I	GGNCC	1 cut(s)	906
BmiI	GGNNCC	2 cut(s)	395, 1144
BmrI	ACTGGG	1 cut(s)	923
BmsI	GCATC	1 cut(s)	642
BmuI	ACTGGG	1 cut(s)	923
Bpu10I	CCTNAGC	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	1 cut(s)	1020
BsaWI	WCCGGW	2 cut(s)	295, 1036
Bse118I	RCCGGY	2 cut(s)	5, 91
Bse1I	ACTGG	1 cut(s)	929
Bse3DI	GCAATG	3 cut(s)	66, 352, 501
Bse8I	GATNNNNATC	1 cut(s)	606
BseAI	TCCGGA	1 cut(s)	1036
BseDI	CCNNGG	1 cut(s)	1020
BseJI	GATNNNNATC	1 cut(s)	606
BseMI	GCAATG	3 cut(s)	66, 352, 501
BseMII	CTCAG	4 cut(s)	39, 63, 167, 1103
BseNI	ACTGG	1 cut(s)	929
BseRI	GAGGAG	4 cut(s)	200, 767, 1077, 1091
BseXI	GCAGC	3 cut(s)	75, 104, 430
Bsh1236I	CGCG	2 cut(s)	749, 1148
BshFI	GGCC	3 cut(s)	5, 95, 226
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	5 cut(s)	6, 14, 92, 296, 1037
BsiWI	CGTACG	1 cut(s)	121
BsmAI	GTCTC	2 cut(s)	749, 1103
BsnI	GGCC	3 cut(s)	5, 95, 226
Bso31I	GGTCTC	1 cut(s)	749
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp13I	TCCGGA	1 cut(s)	1036
Bsp143I	GATC	3 cut(s)	144, 330, 943
BspACI	CCGC	6 cut(s)	199, 425, 699, 749, 1140, 1146
BspANI	GGCC	3 cut(s)	5, 95, 226
BspCNI	CTCAG	4 cut(s)	40, 64, 168, 1102
BspEI	TCCGGA	1 cut(s)	1036
BspFNI	CGCG	2 cut(s)	749, 1148
BspLI	GGNNCC	2 cut(s)	395, 1144
BspTNI	GGTCTC	1 cut(s)	749
BsrDI	GCAATG	3 cut(s)	66, 352, 501
BsrFI	RCCGGY	2 cut(s)	5, 91
BsrI	ACTGG	1 cut(s)	929
BssAI	RCCGGY	2 cut(s)	5, 91
BssECI	CCNNGG	1 cut(s)	1020
BssMI	GATC	3 cut(s)	144, 330, 943
BssNAI	GTATAC	1 cut(s)	853
BssT1I	CCWWGG	1 cut(s)	1020
Bst1107I	GTATAC	1 cut(s)	853
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	615
BstC8I	GCNNGC	5 cut(s)	7, 11, 93, 138, 919
BstDEI	CTNAG	5 cut(s)	48, 72, 176, 695, 1089
BstFNI	CGCG	2 cut(s)	749, 1148
BstHHI	GCGC	1 cut(s)	1150
BstKTI	GATC	3 cut(s)	147, 333, 946
BstMAI	GTCTC	2 cut(s)	749, 1103
BstMBI	GATC	3 cut(s)	144, 330, 943
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 424, 649
BstNSI	RCATGY	2 cut(s)	921, 964
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	2 cut(s)	749, 1148
BstV1I	GCAGC	3 cut(s)	75, 104, 430
BstXI	CCANNNNNNTGG	1 cut(s)	863
BstZ17I	GTATAC	1 cut(s)	853
BsuI	GTATCC	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	5, 95, 226
BtsIMutI	CAGTG	2 cut(s)	936, 1097
Cac8I	GCNNGC	5 cut(s)	7, 11, 93, 138, 919
CfoI	GCGC	1 cut(s)	1150
Cfr10I	RCCGGY	2 cut(s)	5, 91
Cfr13I	GGNCC	1 cut(s)	906
Csp6I	GTAC	3 cut(s)	122, 402, 720
CviAII	CATG	5 cut(s)	132, 585, 857, 918, 961
CviQI	GTAC	3 cut(s)	122, 402, 720
DdeI	CTNAG	5 cut(s)	48, 72, 176, 695, 1089
DpnI	GATC	3 cut(s)	146, 332, 945
DpnII	GATC	3 cut(s)	144, 330, 943
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	2 cut(s)	3, 93
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
EciI	GGCGGA	1 cut(s)	1155
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	1020
Eco147I	AGGCCT	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	288
Eco31I	GGTCTC	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	906
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	542, 804
EcoICRI	GAGCTC	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	838
EcoT14I	CCWWGG	1 cut(s)	1020
EcoT22I	ATGCAT	2 cut(s)	923, 980
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	1020
FaeI	CATG	5 cut(s)	135, 588, 860, 921, 964
FalI	AAGNNNNNCTT	4 cut(s)	641, 673, 1048, 1080
FatI	CATG	5 cut(s)	131, 584, 856, 917, 960
FauI	CCCGC	1 cut(s)	692
FbaI	TGATCA	1 cut(s)	943
FblI	GTMKAC	1 cut(s)	852
Fnu4HI	GCNGC	3 cut(s)	89, 118, 419
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	3 cut(s)	89, 118, 419
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	1 cut(s)	1149
GluI	GCNGC	3 cut(s)	89, 118, 419
HaeIII	GGCC	3 cut(s)	5, 95, 226
HapII	CCGG	5 cut(s)	6, 14, 92, 296, 1037
HhaI	GCGC	1 cut(s)	1150
Hin1II	CATG	5 cut(s)	135, 588, 860, 921, 964
Hin6I	GCGC	1 cut(s)	1148
HinP1I	GCGC	1 cut(s)	1148
HincII	GTYRAC	2 cut(s)	187, 966
HindII	GTYRAC	2 cut(s)	187, 966
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	3 cut(s)	17, 494, 899
HpaII	CCGG	5 cut(s)	6, 14, 92, 296, 1037
HphI	GGTGA	3 cut(s)	275, 1004, 1113
Hpy166II	GTNNAC	3 cut(s)	187, 853, 966
Hpy188I	TCNGA	2 cut(s)	218, 307
Hpy188III	TCNNGA	3 cut(s)	47, 314, 1037
Hpy8I	GTNNAC	3 cut(s)	187, 853, 966
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	6 cut(s)	237, 241, 701, 710, 874, 1034
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	2 cut(s)	267, 302
HpyCH4V	TGCA	9 cut(s)	272, 345, 506, 633, 917, 921, 978, 1134, 1175
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 424, 649
HpyF3I	CTNAG	5 cut(s)	48, 72, 176, 695, 1089
HpySE526I	ACGT	2 cut(s)	267, 302
Hsp92II	CATG	5 cut(s)	135, 588, 860, 921, 964
HspAI	GCGC	1 cut(s)	1148
Kpn2I	TCCGGA	1 cut(s)	1036
KroI	GCCGGC	2 cut(s)	5, 91
KroNI	GCCGGC	2 cut(s)	7, 93
Ksp22I	TGATCA	1 cut(s)	943
Kzo9I	GATC	3 cut(s)	144, 330, 943
LmnI	GCTCC	3 cut(s)	28, 802, 1183
Lsp1109I	GCAGC	3 cut(s)	75, 104, 430
LweI	GCATC	1 cut(s)	642
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	2 cut(s)	267, 302
MaeIII	GTNAC	6 cut(s)	263, 274, 298, 377, 983, 1060
MalI	GATC	3 cut(s)	146, 332, 945
MboI	GATC	3 cut(s)	144, 330, 943
MboII	GAAGA	2 cut(s)	632, 992
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	4 cut(s)	758, 838, 860, 1069
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	8 cut(s)	166, 218, 221, 706, 745, 889, 1069, 1098
Mph1103I	ATGCAT	2 cut(s)	923, 980
MroI	TCCGGA	1 cut(s)	1036
MroNI	GCCGGC	2 cut(s)	5, 91
MroXI	GAANNNNTTC	1 cut(s)	999
MseI	TTAA	2 cut(s)	165, 954
MslI	CAYNNNNRTG	1 cut(s)	973
MspI	CCGG	5 cut(s)	6, 14, 92, 296, 1037
MvnI	CGCG	2 cut(s)	749, 1148
MwoI	GCNNNNNNNGC	3 cut(s)	123, 424, 649
NaeI	GCCGGC	2 cut(s)	7, 93
NdeII	GATC	3 cut(s)	144, 330, 943
NgoMIV	GCCGGC	2 cut(s)	5, 91
NlaIII	CATG	5 cut(s)	135, 588, 860, 921, 964
NlaIV	GGNNCC	2 cut(s)	395, 1144
NmuCI	GTSAC	4 cut(s)	263, 274, 983, 1060
NsiI	ATGCAT	2 cut(s)	923, 980
NspI	RCATGY	2 cut(s)	921, 964
PaeI	GCATGC	1 cut(s)	921
PceI	AGGCCT	1 cut(s)	226
PdiI	GCCGGC	2 cut(s)	7, 93
PdmI	GAANNNNTTC	1 cut(s)	999
PfeI	GAWTC	3 cut(s)	17, 494, 899
Pfl23II	CGTACG	1 cut(s)	121
PkrI	GCNGC	3 cut(s)	90, 119, 420
PsiI	TTATAA	1 cut(s)	1198
Psp124BI	GAGCTC	1 cut(s)	288
PspLI	CGTACG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	395, 1144
PspPI	GGNCC	1 cut(s)	906
RsaI	GTAC	3 cut(s)	123, 403, 721
RsaNI	GTAC	3 cut(s)	122, 402, 720
RseI	CAYNNNNRTG	1 cut(s)	973
SacI	GAGCTC	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	165, 954
SatI	GCNGC	3 cut(s)	89, 118, 419
Sau3AI	GATC	3 cut(s)	144, 330, 943
Sau96I	GGNCC	1 cut(s)	906
SduI	GDGCHC	1 cut(s)	288
SfaNI	GCATC	1 cut(s)	642
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	1 cut(s)	906
SmiMI	CAYNNNNRTG	1 cut(s)	973
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SphI	GCATGC	1 cut(s)	921
Sse9I	AATT	4 cut(s)	758, 838, 860, 1069
SseBI	AGGCCT	1 cut(s)	226
SsiI	CCGC	6 cut(s)	199, 425, 699, 749, 1140, 1146
SspMI	CTAG	1 cut(s)	405
SstI	GAGCTC	1 cut(s)	288
StuI	AGGCCT	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	1020
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	2 cut(s)	270, 305
TaqI	TCGA	2 cut(s)	54, 109
TaqII	GACCGA	1 cut(s)	923
TasI	AATT	4 cut(s)	758, 838, 860, 1069
TatI	WGTACW	1 cut(s)	401
TfiI	GAWTC	3 cut(s)	17, 494, 899
Tru1I	TTAA	2 cut(s)	165, 954
Tru9I	TTAA	2 cut(s)	165, 954
TscAI	CASTG	2 cut(s)	936, 1097
TseFI	GTSAC	4 cut(s)	263, 274, 983, 1060
TseI	GCWGC	3 cut(s)	88, 117, 418
Tsp45I	GTSAC	4 cut(s)	263, 274, 983, 1060
TspDTI	ATGAA	4 cut(s)	555, 573, 873, 893
TspRI	CASTG	2 cut(s)	936, 1097
VpaK11BI	GGWCC	1 cut(s)	906
XapI	RAATTY	3 cut(s)	758, 838, 860
XceI	RCATGY	2 cut(s)	921, 964
XmiI	GTMKAC	1 cut(s)	852
XmnI	GAANNNNTTC	1 cut(s)	999
XspI	CTAG	1 cut(s)	405
Zsp2I	ATGCAT	2 cut(s)	923, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.