Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037517.1

Orthogroup ID

OG0011533

Physical Location & Seq

Genomic Coordinates Forward (+)

3132 .. 3666

Gene Structure 535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037517.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggccgactccataccaattcggggacagcaacaacaaattaacactgtcagtcgtgacttcgacgaggccatcatcgttgacatactgtccaggctaccggccaaatctctactaaggttttgctctgtatgcaaattatggcttactttaatctctgagccctattttgtgaagaagcaccttagccgcgttagaaccaactgcgtcaagctccttgtcggaacacggggttcccaagccgccattatatcgaaagaagataatggcaatgttgcaatcacagagcttgatttcccgaatttgaatgtcgtcatatggaaccctggtactagagaattcaagcggttaccggaagcacattacaaggtaatacgggccacagaaaccacaatgcatgtctttaccctcaagacaggttcatggaggatgataaaaaatatgagggattctcccatgccgaaaggagcccaggggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

159

Amino Acids

18.03

Weight (kDa)

9.84

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03940
rosa_chinensis	RchiOBHm_Chr5g0006261 RchiOBHm_Chr5g0006271
rosa_laevigata	RLG00000031369 RLG00000031370 RLG00000031371
rosa_multiflora	Rmu_sc0002867.1_g000005 Rmu_sc0009371.1_g000001 Rmu_sc0037517.1_g000001 Rmu_sc0037517.1_g000002 Rmu_sc0037517.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069740 Rroxscaffold_1G00069760 Rroxscaffold_1G00069770 Rroxscaffold_1G00069780
rosa_rugosa	Rorug04G0419900 Rorug04G0420000
rosa_samantha	Rh5BG047300 Rh5BG047500
rosa_wichuraiana	Rw5G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	192
AciI	CCGC	3 cut(s)	190, 243, 346
AcoI	YGGCCR	2 cut(s)	3, 102
AcsI	RAATTY	2 cut(s)	301, 338
AfaI	GTAC	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	307, 343
AhdI	GACNNNNNGTC	1 cut(s)	88
AjnI	CCWGG	3 cut(s)	92, 325, 471
AluBI	AGCT	2 cut(s)	214, 289
AluI	AGCT	2 cut(s)	214, 289
AoxI	GGCC	4 cut(s)	3, 69, 102, 378
ApoI	RAATTY	2 cut(s)	301, 338
AspS9I	GGNCC	1 cut(s)	378
BanII	GRGCYC	2 cut(s)	165, 472
BccI	CCATC	1 cut(s)	80
BciT130I	CCWGG	3 cut(s)	94, 327, 473
BfaI	CTAG	1 cut(s)	333
BisI	GCNGC	2 cut(s)	190, 243
BlsI	GCNGC	2 cut(s)	191, 244
Bme1390I	CCNGG	3 cut(s)	94, 327, 473
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	3 cut(s)	235, 323, 469
BmrFI	CCNGG	3 cut(s)	94, 327, 473
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
Bpu10I	CCTNAGC	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	395
BsaJI	CCNNGG	3 cut(s)	325, 471, 472
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	277
BseBI	CCWGG	3 cut(s)	94, 327, 473
BseDI	CCNNGG	3 cut(s)	325, 471, 472
BseGI	GGATG	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	4 cut(s)	5, 71, 104, 380
BsiSI	CCGG	2 cut(s)	101, 353
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	4 cut(s)	5, 71, 104, 380
Bsp1286I	GDGCHC	2 cut(s)	165, 472
BspACI	CCGC	3 cut(s)	190, 243, 346
BspANI	GGCC	4 cut(s)	5, 71, 104, 380
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	3 cut(s)	235, 323, 469
BsrDI	GCAATG	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	3 cut(s)	325, 471, 472
Bst2UI	CCWGG	3 cut(s)	94, 327, 473
Bst4CI	ACNGT	2 cut(s)	49, 90
BstDEI	CTNAG	3 cut(s)	116, 159, 185
BstEII	GGTNACC	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	435
BstFNI	CGCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	3 cut(s)	94, 327, 473
BstNSI	RCATGY	1 cut(s)	401
BstPI	GGTNACC	1 cut(s)	348
BstSCI	CCNGG	3 cut(s)	92, 325, 471
BstUI	CGCG	1 cut(s)	192
BsuRI	GGCC	4 cut(s)	5, 71, 104, 380
BtsCI	GGATG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	45
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	378
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	3 cut(s)	398, 423, 457
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	3 cut(s)	116, 159, 185
DriI	GACNNNNNGTC	1 cut(s)	88
EaeI	YGGCCR	2 cut(s)	3, 102
Eam1105I	GACNNNNNGTC	1 cut(s)	88
Eco24I	GRGCYC	2 cut(s)	165, 472
Eco91I	GGTNACC	1 cut(s)	348
EcoO65I	GGTNACC	1 cut(s)	348
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	3 cut(s)	92, 325, 471
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	2 cut(s)	165, 472
FaeI	CATG	3 cut(s)	401, 426, 460
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	3 cut(s)	397, 422, 456
FauNDI	CATATG	1 cut(s)	317
Fnu4HI	GCNGC	2 cut(s)	190, 243
FokI	GGATG	1 cut(s)	442
FriOI	GRGCYC	2 cut(s)	165, 472
Fsp4HI	GCNGC	2 cut(s)	190, 243
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	2 cut(s)	190, 243
HaeIII	GGCC	4 cut(s)	5, 71, 104, 380
HapII	CCGG	2 cut(s)	101, 353
HgaI	GACGC	1 cut(s)	196
Hin1II	CATG	3 cut(s)	401, 426, 460
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	2 cut(s)	8, 449
HpaII	CCGG	2 cut(s)	101, 353
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	160, 224
Hpy188III	TCNNGA	3 cut(s)	56, 298, 412
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	68
HpyCH4III	ACNGT	2 cut(s)	49, 90
HpyCH4V	TGCA	3 cut(s)	135, 278, 397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	3 cut(s)	116, 159, 185
Hsp92II	CATG	3 cut(s)	401, 426, 460
LmnI	GCTCC	2 cut(s)	219, 467
LpnPI	CCDG	8 cut(s)	79, 106, 114, 312, 339, 366, 402, 458
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	2 cut(s)	56, 348
MboII	GAAGA	2 cut(s)	187, 272
MhlI	GDGCHC	2 cut(s)	165, 472
MluCI	AATT	5 cut(s)	18, 39, 137, 301, 338
MlyI	GAGTC	1 cut(s)	2
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	4 cut(s)	61, 419, 420, 438
Mph1103I	ATGCAT	1 cut(s)	399
MseI	TTAA	2 cut(s)	42, 152
MspI	CCGG	2 cut(s)	101, 353
MspR9I	CCNGG	3 cut(s)	94, 327, 473
MvaI	CCWGG	3 cut(s)	94, 327, 473
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	132
NdeI	CATATG	1 cut(s)	317
NlaIII	CATG	3 cut(s)	401, 426, 460
NlaIV	GGNNCC	3 cut(s)	235, 323, 469
NmuCI	GTSAC	1 cut(s)	56
NsiI	ATGCAT	1 cut(s)	399
NspI	RCATGY	1 cut(s)	401
PasI	CCCWGGG	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	449
PkrI	GCNGC	2 cut(s)	191, 244
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
Psp6I	CCWGG	3 cut(s)	92, 325, 471
PspEI	GGTNACC	1 cut(s)	348
PspGI	CCWGG	3 cut(s)	92, 325, 471
PspN4I	GGNNCC	3 cut(s)	235, 323, 469
PspPI	GGNCC	1 cut(s)	378
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
SaqAI	TTAA	2 cut(s)	42, 152
SatI	GCNGC	2 cut(s)	190, 243
Sau96I	GGNCC	1 cut(s)	378
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	3 cut(s)	94, 327, 473
SduI	GDGCHC	2 cut(s)	165, 472
SetI	ASST	6 cut(s)	122, 186, 216, 291, 372, 421
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	5 cut(s)	18, 39, 137, 301, 338
SsiI	CCGC	3 cut(s)	190, 243, 346
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	3 cut(s)	92, 325, 471
TaaI	ACNGT	2 cut(s)	49, 90
TaqI	TCGA	2 cut(s)	63, 254
TasI	AATT	5 cut(s)	18, 39, 137, 301, 338
TauI	GCSGC	2 cut(s)	192, 245
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	2 cut(s)	42, 152
Tru9I	TTAA	2 cut(s)	42, 152
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	411
TspRI	CASTG	1 cut(s)	52
XapI	RAATTY	2 cut(s)	301, 338
XceI	RCATGY	1 cut(s)	401
XspI	CTAG	1 cut(s)	333
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.