Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011533

Physical Location & Seq

Genomic Coordinates Forward (+)

90641792 .. 90655583

Gene Structure 13792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00069770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCCGGCGAGCTGGTATCGGCTCCACAAACAAACACGATCGGTCCCGAGTTCGATGATGACAGCATTACCGAGATATCGTCAAGGCTACCGGCCAAATCTCTACTTCGATTTCGCTGCGTACTCAAGTCATGGCGTGCTTTGATCTCCAATCCCTCTTTTGTTAAGCAACACCTGAGCAAAGTCAACACTAACCACCGCTTCAACCTCCTCGTCGGAACAAGGCCTTCCCAAGCTTCTGTAGTGAAGGGAGATGGTGATAGTGACGTTGCAGTCACACAAGAGCTCGAGTATCCGGTAACGTCTGACTTTCCTGACTTTTTTCCTTTTGAAATGGGTAACATCATTTTATGGAACCCTTGTACTAGAGAGTTCAAGCAGCTACCGCAACCTGAACTTGATGGTAGAGAATATGACTTTGTGAGTTTCGTATATTTTGCTGGTTTTGGTTATGATTCCACCATTGCAGATTTCAAGGTGATACGAGCCACTAAAATTTATGAAGAGACAACCAGACTTCAGGTATTTACACTCAAAACGGGTTCATGGAGAACCATTACAGATTTCAATCGTATTAGGGAAGAGAGTGAGTGCATCATTCTGCGAGAAAAGCAGGGCTTCTTATTAAACGAAACTCTACATTGGGTAGCCCTTCTAAGCGGGGTAGAGTATGAGGAAGGTACTTTGGGAATAGTGTCTATTGGTCTCGCGGAGGAGAAATTTCAAGTGATGGCACTATTCCCCTGTGGTCGCCCTGCTCCCAATAGCCCCATATCTACTTCAGTTGTGATGGTTGGGAATTCGTTGTTTGTATACCATGAATTTGGTATATGGTTGATGAAGGAATATGGGGTAGAGGAATCTTGGACTAAAGTTGCATGCATTTCCCCAGAGGTTTTACCTCAACATTGTAACAGCATGTTGACACCTTTATGCATTTGTGACAATGGTGACGTTCTTCTCAATCACAGACAAGCCTTGGGAGTATATAATCCGGAAGAAAAGACATTTAGAAGTGTCACTTGGAATTGCGAGGAGTATTCTCCTCAGAGTGTTGCTTGTGTGGAGACTTTAGTTTCACCATTGAACTGCATTGGCGCAATGGAGAACAAGGGTGTAAAAATGGAGCTTCTATCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

380

Amino Acids

42.79

Weight (kDa)

4.96

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	114 - 302	1.5e-16	F-box associated beta propeller domain
FBA_3	PF08268	114 - 343	9.4e-13	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03940
rosa_chinensis	RchiOBHm_Chr5g0006261 RchiOBHm_Chr5g0006271
rosa_laevigata	RLG00000031369 RLG00000031370 RLG00000031371
rosa_multiflora	Rmu_sc0002867.1_g000005 Rmu_sc0009371.1_g000001 Rmu_sc0037517.1_g000001 Rmu_sc0037517.1_g000002 Rmu_sc0037517.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069740 Rroxscaffold_1G00069760 Rroxscaffold_1G00069770 Rroxscaffold_1G00069780
rosa_rugosa	Rorug04G0419900 Rorug04G0420000
rosa_samantha	Rh5BG047300 Rh5BG047500
rosa_wichuraiana	Rw5G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1141
AasI	GACNNNNNNGTC	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	813
AccII	CGCG	1 cut(s)	710
AccIII	TCCGGA	1 cut(s)	994
AciI	CCGC	4 cut(s)	199, 386, 660, 710
AcoI	YGGCCR	2 cut(s)	3, 93
AcsI	RAATTY	4 cut(s)	495, 719, 799, 821
AcuI	CTGAAG	2 cut(s)	503, 765
AfaI	GTAC	3 cut(s)	123, 364, 682
AgsI	TTSAA	7 cut(s)	205, 332, 376, 475, 568, 725, 1087
AjuI	GAANNNNNNNTTGG	2 cut(s)	1006, 1038
AluBI	AGCT	5 cut(s)	13, 236, 286, 382, 1129
AluI	AGCT	5 cut(s)	13, 236, 286, 382, 1129
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	3 cut(s)	500, 710, 1061
Ama87I	CYCGRG	2 cut(s)	47, 287
Aor13HI	TCCGGA	1 cut(s)	994
AoxI	GGCC	3 cut(s)	3, 93, 224
ApeKI	GCWGC	2 cut(s)	117, 379
ApoI	RAATTY	4 cut(s)	495, 719, 799, 821
AspLEI	GCGC	1 cut(s)	1100
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	4 cut(s)	269, 490, 962, 1071
AvaI	CYCGRG	2 cut(s)	47, 287
AvaII	GGWCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	104, 391
BccI	CCATC	4 cut(s)	248, 395, 724, 784
BcgI	CGANNNNNNTGC	2 cut(s)	99, 133
BciVI	GTATCC	1 cut(s)	303
BcoDI	GTCTC	3 cut(s)	500, 710, 1061
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	303
BisI	GCNGC	2 cut(s)	118, 380
BlsI	GCNGC	2 cut(s)	119, 381
Bme18I	GGWCC	1 cut(s)	44
BmeT110I	CYCGRG	2 cut(s)	47, 287
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	3 cut(s)	24, 46, 356
BmsI	GCATC	1 cut(s)	603
Bpu10I	CCTNAGC	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	710
BsaJI	CCNNGG	1 cut(s)	978
BsaWI	WCCGGW	2 cut(s)	295, 994
Bse118I	RCCGGY	2 cut(s)	5, 91
Bse3DI	GCAATG	2 cut(s)	462, 1107
Bse8I	GATNNNNATC	1 cut(s)	567
BseAI	TCCGGA	1 cut(s)	994
BseDI	CCNNGG	1 cut(s)	978
BseJI	GATNNNNATC	1 cut(s)	567
BseMI	GCAATG	2 cut(s)	462, 1107
BseMII	CTCAG	2 cut(s)	167, 1061
BseRI	GAGGAG	4 cut(s)	200, 728, 1035, 1049
BseXI	GCAGC	2 cut(s)	104, 391
Bsh1236I	CGCG	1 cut(s)	710
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	3 cut(s)	5, 95, 226
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	2 cut(s)	47, 287
BsiSI	CCGG	4 cut(s)	6, 92, 296, 995
BslFI	GGGAC	1 cut(s)	30
BsmAI	GTCTC	3 cut(s)	500, 710, 1061
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	3 cut(s)	5, 95, 226
Bso31I	GGTCTC	1 cut(s)	710
BsoBI	CYCGRG	2 cut(s)	47, 287
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp13I	TCCGGA	1 cut(s)	994
Bsp143I	GATC	2 cut(s)	39, 144
BspACI	CCGC	4 cut(s)	199, 386, 660, 710
BspANI	GGCC	3 cut(s)	5, 95, 226
BspCNI	CTCAG	2 cut(s)	168, 1060
BspEI	TCCGGA	1 cut(s)	994
BspFNI	CGCG	1 cut(s)	710
BspLI	GGNNCC	3 cut(s)	24, 46, 356
BspTNI	GGTCTC	1 cut(s)	710
BsrDI	GCAATG	2 cut(s)	462, 1107
BsrFI	RCCGGY	2 cut(s)	5, 91
BssAI	RCCGGY	2 cut(s)	5, 91
BssECI	CCNNGG	1 cut(s)	978
BssMI	GATC	2 cut(s)	39, 144
BssNAI	GTATAC	1 cut(s)	814
BssT1I	CCWWGG	1 cut(s)	978
Bst1107I	GTATAC	1 cut(s)	814
Bst6I	CTCTTC	2 cut(s)	498, 576
BstC8I	GCNNGC	4 cut(s)	7, 11, 138, 880
BstDEI	CTNAG	3 cut(s)	176, 656, 1047
BstFNI	CGCG	1 cut(s)	710
BstHHI	GCGC	1 cut(s)	1100
BstKTI	GATC	2 cut(s)	42, 147
BstMAI	GTCTC	3 cut(s)	500, 710, 1061
BstMBI	GATC	2 cut(s)	39, 144
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 610
BstNSI	RCATGY	2 cut(s)	882, 922
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	710
BstV1I	GCAGC	2 cut(s)	104, 391
BstXI	CCANNNNNNTGG	1 cut(s)	824
BstZ17I	GTATAC	1 cut(s)	814
BsuI	GTATCC	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	5, 95, 226
Cac8I	GCNNGC	4 cut(s)	7, 11, 138, 880
CfoI	GCGC	1 cut(s)	1100
Cfr10I	RCCGGY	2 cut(s)	5, 91
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	122, 363, 681
CviAII	CATG	5 cut(s)	132, 546, 818, 879, 919
CviQI	GTAC	3 cut(s)	122, 363, 681
DdeI	CTNAG	3 cut(s)	176, 656, 1047
DpnI	GATC	2 cut(s)	41, 146
DpnII	GATC	2 cut(s)	39, 144
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	2 cut(s)	3, 93
Eam1104I	CTCTTC	2 cut(s)	498, 576
EarI	CTCTTC	2 cut(s)	498, 576
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	978
Eco147I	AGGCCT	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	288
Eco31I	GGTCTC	1 cut(s)	710
Eco32I	GATATC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	503, 765
Eco88I	CYCGRG	2 cut(s)	47, 287
EcoICRI	GAGCTC	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	799
EcoRV	GATATC	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	978
EcoT22I	ATGCAT	2 cut(s)	884, 938
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	978
FaeI	CATG	5 cut(s)	135, 549, 821, 882, 922
FalI	AAGNNNNNCTT	4 cut(s)	602, 634, 1006, 1038
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	5 cut(s)	131, 545, 817, 878, 918
FauI	CCCGC	1 cut(s)	653
FblI	GTMKAC	1 cut(s)	813
Fnu4HI	GCNGC	2 cut(s)	118, 380
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	118, 380
FspBI	CTAG	1 cut(s)	366
GlaI	GCGC	1 cut(s)	1099
GluI	GCNGC	2 cut(s)	118, 380
HaeIII	GGCC	3 cut(s)	5, 95, 226
HapII	CCGG	4 cut(s)	6, 92, 296, 995
HhaI	GCGC	1 cut(s)	1100
Hin1II	CATG	5 cut(s)	135, 549, 821, 882, 922
Hin6I	GCGC	1 cut(s)	1098
HinP1I	GCGC	1 cut(s)	1098
HincII	GTYRAC	2 cut(s)	187, 924
HindII	GTYRAC	2 cut(s)	187, 924
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	2 cut(s)	455, 860
HpaII	CCGG	4 cut(s)	6, 92, 296, 995
HphI	GGTGA	4 cut(s)	269, 490, 962, 1071
Hpy166II	GTNNAC	3 cut(s)	187, 814, 924
Hpy188I	TCNGA	3 cut(s)	218, 307, 1050
Hpy188III	TCNNGA	3 cut(s)	47, 314, 995
Hpy8I	GTNNAC	3 cut(s)	187, 814, 924
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	5 cut(s)	237, 241, 662, 671, 835
HpyCH4IV	ACGT	3 cut(s)	267, 302, 954
HpyCH4V	TGCA	7 cut(s)	272, 467, 594, 878, 882, 936, 1092
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 610
HpyF3I	CTNAG	3 cut(s)	176, 656, 1047
HpySE526I	ACGT	3 cut(s)	267, 302, 954
Hsp92II	CATG	5 cut(s)	135, 549, 821, 882, 922
HspAI	GCGC	1 cut(s)	1098
Kpn2I	TCCGGA	1 cut(s)	994
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	39, 144
LmnI	GCTCC	3 cut(s)	28, 763, 1126
Lsp1109I	GCAGC	2 cut(s)	104, 391
LweI	GCATC	1 cut(s)	603
MaeI	CTAG	1 cut(s)	366
MaeII	ACGT	3 cut(s)	267, 302, 954
MaeIII	GTNAC	8 cut(s)	263, 274, 298, 338, 911, 941, 950, 1018
MalI	GATC	2 cut(s)	41, 146
MboI	GATC	2 cut(s)	39, 144
MboII	GAAGA	4 cut(s)	515, 593, 950, 1010
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	5 cut(s)	495, 719, 799, 821, 1027
MmeI	TCCRAC	1 cut(s)	196
Mph1103I	ATGCAT	2 cut(s)	884, 938
MroI	TCCGGA	1 cut(s)	994
MroNI	GCCGGC	1 cut(s)	5
MseI	TTAA	2 cut(s)	165, 626
MslI	CAYNNNNRTG	1 cut(s)	931
MspI	CCGG	4 cut(s)	6, 92, 296, 995
MvnI	CGCG	1 cut(s)	710
MwoI	GCNNNNNNNGC	2 cut(s)	385, 610
NaeI	GCCGGC	1 cut(s)	7
NdeII	GATC	2 cut(s)	39, 144
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	5 cut(s)	135, 549, 821, 882, 922
NlaIV	GGNNCC	3 cut(s)	24, 46, 356
NmuCI	GTSAC	5 cut(s)	263, 274, 941, 950, 1018
NsiI	ATGCAT	2 cut(s)	884, 938
NspI	RCATGY	2 cut(s)	882, 922
PaeI	GCATGC	1 cut(s)	882
PaeR7I	CTCGAG	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	226
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	2 cut(s)	455, 860
PkrI	GCNGC	2 cut(s)	119, 381
Ple19I	CGATCG	1 cut(s)	42
PsiI	TTATAA	1 cut(s)	1141
Psp124BI	GAGCTC	1 cut(s)	288
PspN4I	GGNNCC	3 cut(s)	24, 46, 356
PspPI	GGNCC	1 cut(s)	44
PspXI	VCTCGAGB	1 cut(s)	287
PvuI	CGATCG	1 cut(s)	42
RsaI	GTAC	3 cut(s)	123, 364, 682
RsaNI	GTAC	3 cut(s)	122, 363, 681
RseI	CAYNNNNRTG	1 cut(s)	931
SacI	GAGCTC	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	165, 626
SatI	GCNGC	2 cut(s)	118, 380
Sau3AI	GATC	2 cut(s)	39, 144
Sau96I	GGNCC	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	288
SfaNI	GCATC	1 cut(s)	603
SfcI	CTRYAG	1 cut(s)	240
Sfr274I	CTCGAG	1 cut(s)	287
SinI	GGWCC	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	931
SmlI	CTYRAG	2 cut(s)	125, 287
SmoI	CTYRAG	2 cut(s)	125, 287
SphI	GCATGC	1 cut(s)	882
Sse9I	AATT	5 cut(s)	495, 719, 799, 821, 1027
SseBI	AGGCCT	1 cut(s)	226
SsiI	CCGC	4 cut(s)	199, 386, 660, 710
SspMI	CTAG	1 cut(s)	366
SstI	GAGCTC	1 cut(s)	288
StuI	AGGCCT	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	978
TaiI	ACGT	3 cut(s)	270, 305, 957
TaqI	TCGA	3 cut(s)	54, 109, 288
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	5 cut(s)	495, 719, 799, 821, 1027
TatI	WGTACW	1 cut(s)	362
TfiI	GAWTC	2 cut(s)	455, 860
Tru1I	TTAA	2 cut(s)	165, 626
Tru9I	TTAA	2 cut(s)	165, 626
TseFI	GTSAC	5 cut(s)	263, 274, 941, 950, 1018
TseI	GCWGC	2 cut(s)	117, 379
Tsp45I	GTSAC	5 cut(s)	263, 274, 941, 950, 1018
TspDTI	ATGAA	4 cut(s)	516, 534, 834, 854
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	4 cut(s)	495, 719, 799, 821
XceI	RCATGY	2 cut(s)	882, 922
XhoI	CTCGAG	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	813
XspI	CTAG	1 cut(s)	366
Zsp2I	ATGCAT	2 cut(s)	884, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.