Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009371.1

Orthogroup ID

OG0011533

Physical Location & Seq

Genomic Coordinates Forward (+)

179 .. 3660

Gene Structure 3482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009371.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

atggccggcgagccggattcagctccacaaacaaacacagtcagtcctgagttcgatgatgacagcattgctgagatactgtcaaggctgccggccaaatctctacttcgatttcgctgcgtacgcaagtcatggcgtgctttgatctccaatccctcttttgttaagcagcacctgagcaaagtcaacactaaccaccgcttcaacctcgtcgtcggaacaaggccttcccaagcttctgtagtgaaggtagatgatgatggtgacgttgcagtcacacaagagctcaagtatccggtaacgtctgactttcctgacttttttcctgtgatctatggttcttgcaatggcttgatttgtatggagtttgaaatgggtaacatcattttatggaacccttgtactagagagttcaagcagctaccgcaacctgaacttgatgatagagaatatgactttgtgagtttcgtatgttttgctggttttggttatgattccaccattgcagatttcaaggtaatacgagccactaaaatatatgaagagccaaccacacttcaggtatttacactcaaaacgggttcatggagaaccattacagctttcaatcgtattagggaagagagtgagtgcatcattctgcgagaaaagcagggcttcttactaaacgaaactctacattgggtagcccttctaagcggggcagagtatgaggaaggtacattgggaatagtgtctattggtctcgcggaggagaaatttcaagtgatggcactactcccctgtggtcgccctgctcccaatagccccgtatctacttcagttgtgatggttgggaattcgttgtttgtataccatgaatttggtatatggttgatgaaggaatatggggtagaggaatcttggaccgaagttgcatgcatttccccagaggttttacctcaacattttaacagcatgttgacacctttatgcatttgtgacaatggtgaagttcttctcaatcatagacaagccttgggagtatataatccggaagaaaagacatttagaagtgtcacttggaattgcgaggagtattctcctcagtgtgttgcttatgtggagactttagtttcaccattgaactgcattggcgcaaccgcgcaaaagcaccttagccgcgttagaaccaactgcctcaagctccttgtcggaacacggggttcccaagccgccattatatcgaaagaagataatggcaatgttgcaatcacagagcttgatttcccgaatttgaatgtcgtcatatggaaccctggtactagagaattcaagcggttaccggaagcacattacaaggtaatacgggccacagaaaccacaatgcatgtctttaccctcaagacaggttcatggaggatgataaaaaatatgagggattctcccatgccgaaaggagcccaggggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

483

Amino Acids

54.34

Weight (kDa)

5.54

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03940
rosa_chinensis	RchiOBHm_Chr5g0006261 RchiOBHm_Chr5g0006271
rosa_laevigata	RLG00000031369 RLG00000031370 RLG00000031371
rosa_multiflora	Rmu_sc0002867.1_g000005 Rmu_sc0009371.1_g000001 Rmu_sc0037517.1_g000001 Rmu_sc0037517.1_g000002 Rmu_sc0037517.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069740 Rroxscaffold_1G00069760 Rroxscaffold_1G00069770 Rroxscaffold_1G00069780
rosa_rugosa	Rorug04G0419900 Rorug04G0420000
rosa_samantha	Rh5BG047300 Rh5BG047500
rosa_wichuraiana	Rw5G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	852
AccII	CGCG	3 cut(s)	749, 1145, 1164
AccIII	TCCGGA	1 cut(s)	1033
AciI	CCGC	8 cut(s)	199, 425, 699, 749, 1143, 1162, 1215, 1318
AcoI	YGGCCR	2 cut(s)	3, 93
AcsI	RAATTY	5 cut(s)	758, 838, 860, 1273, 1310
AcuI	CTGAAG	2 cut(s)	542, 804
AfaI	GTAC	4 cut(s)	123, 403, 721, 1303
AgsI	TTSAA	9 cut(s)	205, 371, 415, 514, 607, 764, 1126, 1279, 1315
AjnI	CCWGG	2 cut(s)	1297, 1443
AjuI	GAANNNNNNNTTGG	2 cut(s)	1045, 1077
AluBI	AGCT	7 cut(s)	23, 236, 286, 421, 602, 1186, 1261
AluI	AGCT	7 cut(s)	23, 236, 286, 421, 602, 1186, 1261
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	749, 1100
AlwNI	CAGNNNCTG	1 cut(s)	175
Aor13HI	TCCGGA	1 cut(s)	1033
AoxI	GGCC	4 cut(s)	3, 93, 224, 1350
ApeKI	GCWGC	4 cut(s)	88, 117, 169, 418
ApoI	RAATTY	5 cut(s)	758, 838, 860, 1273, 1310
Asp700I	GAANNNNTTC	1 cut(s)	996
AspLEI	GCGC	2 cut(s)	1139, 1147
AspS9I	GGNCC	2 cut(s)	906, 1350
AsuHPI	GGTGA	3 cut(s)	275, 1001, 1110
AvaII	GGWCC	1 cut(s)	906
BanII	GRGCYC	2 cut(s)	288, 1444
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	4 cut(s)	75, 104, 181, 430
BccI	CCATC	3 cut(s)	254, 763, 823
BcgI	CGANNNNNNTGC	2 cut(s)	99, 133
BciT130I	CCWGG	2 cut(s)	1299, 1445
BciVI	GTATCC	1 cut(s)	303
BcoDI	GTCTC	2 cut(s)	749, 1100
BfaI	CTAG	2 cut(s)	405, 1305
BfmI	CTRYAG	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	303
BisI	GCNGC	6 cut(s)	89, 118, 170, 419, 1162, 1215
BlsI	GCNGC	6 cut(s)	90, 119, 171, 420, 1163, 1216
Bme1390I	CCNGG	2 cut(s)	1299, 1445
Bme18I	GGWCC	1 cut(s)	906
BmgT120I	GGNCC	2 cut(s)	906, 1350
BmiI	GGNNCC	4 cut(s)	395, 1207, 1295, 1441
BmrFI	CCNGG	2 cut(s)	1299, 1445
BmsI	GCATC	1 cut(s)	642
BplI	GAGNNNNNCTC	2 cut(s)	1408, 1440
Bpu10I	CCTNAGC	2 cut(s)	176, 1157
BpuEI	CTTGAG	3 cut(s)	272, 1166, 1367
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	4 cut(s)	1017, 1297, 1443, 1444
BsaWI	WCCGGW	3 cut(s)	295, 1033, 1324
Bse118I	RCCGGY	2 cut(s)	5, 91
Bse3DI	GCAATG	4 cut(s)	66, 352, 501, 1249
BseAI	TCCGGA	1 cut(s)	1033
BseBI	CCWGG	2 cut(s)	1299, 1445
BseDI	CCNNGG	4 cut(s)	1017, 1297, 1443, 1444
BseGI	GGATG	1 cut(s)	1407
BseMI	GCAATG	4 cut(s)	66, 352, 501, 1249
BseMII	CTCAG	4 cut(s)	39, 63, 167, 1100
BseRI	GAGGAG	3 cut(s)	767, 1074, 1088
BseXI	GCAGC	4 cut(s)	75, 104, 181, 430
Bsh1236I	CGCG	3 cut(s)	749, 1145, 1164
BshFI	GGCC	4 cut(s)	5, 95, 226, 1352
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	6 cut(s)	6, 14, 92, 296, 1034, 1325
BsiWI	CGTACG	1 cut(s)	121
BsmAI	GTCTC	2 cut(s)	749, 1100
BsnI	GGCC	4 cut(s)	5, 95, 226, 1352
Bso31I	GGTCTC	1 cut(s)	749
Bsp1286I	GDGCHC	2 cut(s)	288, 1444
Bsp13I	TCCGGA	1 cut(s)	1033
Bsp143I	GATC	2 cut(s)	144, 330
BspACI	CCGC	8 cut(s)	199, 425, 699, 749, 1143, 1162, 1215, 1318
BspANI	GGCC	4 cut(s)	5, 95, 226, 1352
BspCNI	CTCAG	4 cut(s)	40, 64, 168, 1099
BspEI	TCCGGA	1 cut(s)	1033
BspFNI	CGCG	3 cut(s)	749, 1145, 1164
BspLI	GGNNCC	4 cut(s)	395, 1207, 1295, 1441
BspQI	GCTCTTC	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	749
BsrDI	GCAATG	4 cut(s)	66, 352, 501, 1249
BsrFI	RCCGGY	2 cut(s)	5, 91
BssAI	RCCGGY	2 cut(s)	5, 91
BssECI	CCNNGG	4 cut(s)	1017, 1297, 1443, 1444
BssMI	GATC	2 cut(s)	144, 330
BssNAI	GTATAC	1 cut(s)	853
BssT1I	CCWWGG	1 cut(s)	1017
Bst1107I	GTATAC	1 cut(s)	853
Bst2UI	CCWGG	2 cut(s)	1299, 1445
Bst4CI	ACNGT	2 cut(s)	40, 81
Bst6I	CTCTTC	2 cut(s)	537, 615
BstC8I	GCNNGC	5 cut(s)	7, 11, 93, 138, 919
BstDEI	CTNAG	6 cut(s)	48, 72, 176, 695, 1086, 1157
BstEII	GGTNACC	1 cut(s)	1320
BstF5I	GGATG	1 cut(s)	1407
BstFNI	CGCG	3 cut(s)	749, 1145, 1164
BstHHI	GCGC	2 cut(s)	1139, 1147
BstKTI	GATC	2 cut(s)	147, 333
BstMAI	GTCTC	2 cut(s)	749, 1100
BstMBI	GATC	2 cut(s)	144, 330
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 424, 649
BstNI	CCWGG	2 cut(s)	1299, 1445
BstNSI	RCATGY	3 cut(s)	921, 961, 1373
BstPI	GGTNACC	1 cut(s)	1320
BstSCI	CCNGG	2 cut(s)	1297, 1443
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	3 cut(s)	749, 1145, 1164
BstV1I	GCAGC	4 cut(s)	75, 104, 181, 430
BstXI	CCANNNNNNTGG	1 cut(s)	863
BstZ17I	GTATAC	1 cut(s)	853
BsuI	GTATCC	1 cut(s)	303
BsuRI	GGCC	4 cut(s)	5, 95, 226, 1352
BtsCI	GGATG	1 cut(s)	1407
BtsIMutI	CAGTG	1 cut(s)	1094
Cac8I	GCNNGC	5 cut(s)	7, 11, 93, 138, 919
CaiI	CAGNNNCTG	1 cut(s)	175
CfoI	GCGC	2 cut(s)	1139, 1147
Cfr10I	RCCGGY	2 cut(s)	5, 91
Cfr13I	GGNCC	2 cut(s)	906, 1350
Csp6I	GTAC	4 cut(s)	122, 402, 720, 1302
CviAII	CATG	8 cut(s)	132, 585, 857, 918, 958, 1370, 1395, 1429
CviQI	GTAC	4 cut(s)	122, 402, 720, 1302
DdeI	CTNAG	6 cut(s)	48, 72, 176, 695, 1086, 1157
DpnI	GATC	2 cut(s)	146, 332
DpnII	GATC	2 cut(s)	144, 330
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	2 cut(s)	3, 93
Eam1104I	CTCTTC	2 cut(s)	537, 615
EarI	CTCTTC	2 cut(s)	537, 615
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	1017
Eco147I	AGGCCT	1 cut(s)	226
Eco24I	GRGCYC	2 cut(s)	288, 1444
Eco31I	GGTCTC	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	906
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	542, 804
Eco91I	GGTNACC	1 cut(s)	1320
EcoICRI	GAGCTC	1 cut(s)	286
EcoO65I	GGTNACC	1 cut(s)	1320
EcoRI	GAATTC	2 cut(s)	838, 1310
EcoRII	CCWGG	2 cut(s)	1297, 1443
EcoT14I	CCWWGG	1 cut(s)	1017
EcoT22I	ATGCAT	3 cut(s)	923, 977, 1371
EcoT38I	GRGCYC	2 cut(s)	288, 1444
ErhI	CCWWGG	1 cut(s)	1017
FaeI	CATG	8 cut(s)	135, 588, 860, 921, 961, 1373, 1398, 1432
FalI	AAGNNNNNCTT	4 cut(s)	641, 673, 1045, 1077
FatI	CATG	8 cut(s)	131, 584, 856, 917, 957, 1369, 1394, 1428
FauI	CCCGC	1 cut(s)	692
FauNDI	CATATG	1 cut(s)	1289
FblI	GTMKAC	1 cut(s)	852
Fnu4HI	GCNGC	6 cut(s)	89, 118, 170, 419, 1162, 1215
FokI	GGATG	1 cut(s)	1414
FriOI	GRGCYC	2 cut(s)	288, 1444
Fsp4HI	GCNGC	6 cut(s)	89, 118, 170, 419, 1162, 1215
FspBI	CTAG	2 cut(s)	405, 1305
GlaI	GCGC	2 cut(s)	1138, 1146
GluI	GCNGC	6 cut(s)	89, 118, 170, 419, 1162, 1215
HaeIII	GGCC	4 cut(s)	5, 95, 226, 1352
HapII	CCGG	6 cut(s)	6, 14, 92, 296, 1034, 1325
HhaI	GCGC	2 cut(s)	1139, 1147
Hin1II	CATG	8 cut(s)	135, 588, 860, 921, 961, 1373, 1398, 1432
Hin6I	GCGC	2 cut(s)	1137, 1145
HinP1I	GCGC	2 cut(s)	1137, 1145
HincII	GTYRAC	2 cut(s)	187, 963
HindII	GTYRAC	2 cut(s)	187, 963
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	4 cut(s)	17, 494, 899, 1421
HpaII	CCGG	6 cut(s)	6, 14, 92, 296, 1034, 1325
HphI	GGTGA	3 cut(s)	275, 1001, 1110
Hpy166II	GTNNAC	3 cut(s)	187, 853, 963
Hpy188I	TCNGA	3 cut(s)	218, 307, 1196
Hpy188III	TCNNGA	5 cut(s)	47, 314, 1034, 1270, 1384
Hpy8I	GTNNAC	3 cut(s)	187, 853, 963
Hpy99I	CGWCG	2 cut(s)	215, 218
HpyAV	CCTTC	5 cut(s)	237, 241, 701, 710, 874
HpyCH4III	ACNGT	2 cut(s)	40, 81
HpyCH4IV	ACGT	2 cut(s)	267, 302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 424, 649
HpyF3I	CTNAG	6 cut(s)	48, 72, 176, 695, 1086, 1157
HpySE526I	ACGT	2 cut(s)	267, 302
Hsp92II	CATG	8 cut(s)	135, 588, 860, 921, 961, 1373, 1398, 1432
HspAI	GCGC	2 cut(s)	1137, 1145
Kpn2I	TCCGGA	1 cut(s)	1033
KroI	GCCGGC	2 cut(s)	5, 91
KroNI	GCCGGC	2 cut(s)	7, 93
Kzo9I	GATC	2 cut(s)	144, 330
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	4 cut(s)	28, 802, 1191, 1439
Lsp1109I	GCAGC	4 cut(s)	75, 104, 181, 430
LweI	GCATC	1 cut(s)	642
MaeI	CTAG	2 cut(s)	405, 1305
MaeII	ACGT	2 cut(s)	267, 302
MaeIII	GTNAC	7 cut(s)	263, 274, 298, 377, 980, 1057, 1320
MalI	GATC	2 cut(s)	146, 332
MboI	GATC	2 cut(s)	144, 330
MboII	GAAGA	5 cut(s)	554, 632, 989, 1049, 1244
MhlI	GDGCHC	2 cut(s)	288, 1444
MluCI	AATT	6 cut(s)	758, 838, 860, 1066, 1273, 1310
MmeI	TCCRAC	2 cut(s)	196, 1174
Mph1103I	ATGCAT	3 cut(s)	923, 977, 1371
MroI	TCCGGA	1 cut(s)	1033
MroNI	GCCGGC	2 cut(s)	5, 91
MroXI	GAANNNNTTC	1 cut(s)	996
MseI	TTAA	2 cut(s)	165, 951
MslI	CAYNNNNRTG	1 cut(s)	970
MspI	CCGG	6 cut(s)	6, 14, 92, 296, 1034, 1325
MspR9I	CCNGG	2 cut(s)	1299, 1445
MvaI	CCWGG	2 cut(s)	1299, 1445
MvnI	CGCG	3 cut(s)	749, 1145, 1164
MwoI	GCNNNNNNNGC	3 cut(s)	123, 424, 649
NaeI	GCCGGC	2 cut(s)	7, 93
NdeI	CATATG	1 cut(s)	1289
NdeII	GATC	2 cut(s)	144, 330
NgoMIV	GCCGGC	2 cut(s)	5, 91
NlaIII	CATG	8 cut(s)	135, 588, 860, 921, 961, 1373, 1398, 1432
NlaIV	GGNNCC	4 cut(s)	395, 1207, 1295, 1441
NmuCI	GTSAC	4 cut(s)	263, 274, 980, 1057
NsiI	ATGCAT	3 cut(s)	923, 977, 1371
NspI	RCATGY	3 cut(s)	921, 961, 1373
PaeI	GCATGC	1 cut(s)	921
PasI	CCCWGGG	1 cut(s)	1444
PceI	AGGCCT	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	537
PdiI	GCCGGC	2 cut(s)	7, 93
PdmI	GAANNNNTTC	1 cut(s)	996
PfeI	GAWTC	4 cut(s)	17, 494, 899, 1421
Pfl23II	CGTACG	1 cut(s)	121
PkrI	GCNGC	6 cut(s)	90, 119, 171, 420, 1163, 1216
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	1297, 1443
PspEI	GGTNACC	1 cut(s)	1320
PspGI	CCWGG	2 cut(s)	1297, 1443
PspLI	CGTACG	1 cut(s)	121
PspN4I	GGNNCC	4 cut(s)	395, 1207, 1295, 1441
PspPI	GGNCC	2 cut(s)	906, 1350
PstNI	CAGNNNCTG	1 cut(s)	175
RsaI	GTAC	4 cut(s)	123, 403, 721, 1303
RsaNI	GTAC	4 cut(s)	122, 402, 720, 1302
RseI	CAYNNNNRTG	1 cut(s)	970
SacI	GAGCTC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	2 cut(s)	165, 951
SatI	GCNGC	6 cut(s)	89, 118, 170, 419, 1162, 1215
Sau3AI	GATC	2 cut(s)	144, 330
Sau96I	GGNCC	2 cut(s)	906, 1350
ScrFI	CCNGG	2 cut(s)	1299, 1445
SduI	GDGCHC	2 cut(s)	288, 1444
SfaNI	GCATC	1 cut(s)	642
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	1 cut(s)	906
SmiMI	CAYNNNNRTG	1 cut(s)	970
SmlI	CTYRAG	3 cut(s)	287, 1181, 1382
SmoI	CTYRAG	3 cut(s)	287, 1181, 1382
SphI	GCATGC	1 cut(s)	921
Sse9I	AATT	6 cut(s)	758, 838, 860, 1066, 1273, 1310
SseBI	AGGCCT	1 cut(s)	226
SsiI	CCGC	8 cut(s)	199, 425, 699, 749, 1143, 1162, 1215, 1318
SspMI	CTAG	2 cut(s)	405, 1305
SstI	GAGCTC	1 cut(s)	288
StuI	AGGCCT	1 cut(s)	226
StyD4I	CCNGG	2 cut(s)	1297, 1443
StyI	CCWWGG	1 cut(s)	1017
TaaI	ACNGT	2 cut(s)	40, 81
TaiI	ACGT	2 cut(s)	270, 305
TaqI	TCGA	3 cut(s)	54, 109, 1226
TaqII	GACCGA	1 cut(s)	923
TasI	AATT	6 cut(s)	758, 838, 860, 1066, 1273, 1310
TatI	WGTACW	1 cut(s)	401
TauI	GCSGC	2 cut(s)	1164, 1217
TfiI	GAWTC	4 cut(s)	17, 494, 899, 1421
Tru1I	TTAA	2 cut(s)	165, 951
Tru9I	TTAA	2 cut(s)	165, 951
TscAI	CASTG	1 cut(s)	1094
TseFI	GTSAC	4 cut(s)	263, 274, 980, 1057
TseI	GCWGC	4 cut(s)	88, 117, 169, 418
Tsp45I	GTSAC	4 cut(s)	263, 274, 980, 1057
TspDTI	ATGAA	5 cut(s)	555, 573, 873, 893, 1383
TspRI	CASTG	1 cut(s)	1094
VpaK11BI	GGWCC	1 cut(s)	906
XapI	RAATTY	5 cut(s)	758, 838, 860, 1273, 1310
XceI	RCATGY	3 cut(s)	921, 961, 1373
XmiI	GTMKAC	1 cut(s)	852
XmnI	GAANNNNTTC	1 cut(s)	996
XspI	CTAG	2 cut(s)	405, 1305
Zsp2I	ATGCAT	3 cut(s)	923, 977, 1371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.