Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0011533

Physical Location & Seq

Genomic Coordinates Reverse (-)

5028769 .. 5030946

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G004820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGCCGGCGAGCCGGATTCAGCTCCACAAACAAACACAGTCAGTCCTCAGTTCGATGATGACAGCATTGCTGAGATACTGTCAAGGCTGCCGGCCAAATCTCTACTTCGATTTCGCTGCGTACGCAAGTCATGGCGTGCTTTGATCTCCAATCCCTCTTTTGTTAAGCAGCACCTGAGCAAAGTCAACACTAACCACCGCTTCAACCTCCTCGTCGGAACAAGGCCTTCCCAAGCTTCTGTAGTGAAGGTAGATGATGATGGTGACGTTGCAGTCACACAAGAGCTCAAGTATCCGGTAACGTCTGACTTTCCTGACTTTTTTCCTGTGATCTATGGTTCTTGCAATGGCTTGATTTGTATGGAGTTTGAAATGGGTAACATCATATTATGGAACCCTTGTACTAGAGAGTTCAAGCAGCTACCGCAACCTGAACTTGATGATAGAGAATATGACTTTGTGAGTTTCGTATGTTTTGCTGGTTTTGGTTATGATTCCACCATTGCAGATTTCAAGGTAATACGAGCCACTAAAATATATGAAGAGCCAACCACACTTCAGGTATTTACACTCAAAACGGGTTCATGGAGAACCATAACAGATTTCAATCGTATTAGGGAAGAGAGTGAGTGCATCATTGTGCGAGAAAAGCATGGCTTCTTACTAAACGAAACTCTACATTGGGTAGCCCTTCTAAGCGGGGCAGAGTATGAGGAAGGTACTTTGGGAATAATCTCTATTGGTCTCGCGGAGGAGAAATTTCAAGTGATGGCACTACTCCCCTGTGGTCGCCCTGCTCCCAATAGCCCCGTATCTACTTCAGTTGTGATGGTTGGGAATTCGTTGTTTGTATACCATGAATTTGGTATATGGTTGATGAAGGAATATGGGGTAGAGGAATCTTGGACCGAAGTTGCATGCATTTCCCCAGAGGTTTTACCTCAACATTTTAACAGCATGTTGACACCTTTATGCATTTGTGACAATGGTGAAGTTCTTCTCAATCATAGACAAGCCTTGGGAGTATATAATCCGGAAGAAAAGACATTTAGAAGTGTCACTTGGAATTGCGAGGAGTATTCTCCTCAGTGTGTTGCTTATGTGGAGACTTTAGTTTCACCATTGAACTACTGCATTGGCGCAACCGCGCAAGTGAAAGTGGAGAACAAGGGTGCAAAAATGGAGCTTCTATCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

399

Amino Acids

44.93

Weight (kDa)

4.92

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	19 - 55	6.3e-07	F-box domain
FBA_3	PF08268	92 - 356	5e-17	F-box associated beta propeller domain
FBA_1	PF07734	107 - 373	5.1e-22	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03940
rosa_chinensis	RchiOBHm_Chr5g0006261 RchiOBHm_Chr5g0006271
rosa_laevigata	RLG00000031369 RLG00000031370 RLG00000031371
rosa_multiflora	Rmu_sc0002867.1_g000005 Rmu_sc0009371.1_g000001 Rmu_sc0037517.1_g000001 Rmu_sc0037517.1_g000002 Rmu_sc0037517.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069740 Rroxscaffold_1G00069760 Rroxscaffold_1G00069770 Rroxscaffold_1G00069780
rosa_rugosa	Rorug04G0419900 Rorug04G0420000
rosa_samantha	Rh5BG047300 Rh5BG047500
rosa_wichuraiana	Rw5G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1198
AasI	GACNNNNNNGTC	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	852
AccII	CGCG	2 cut(s)	749, 1148
AccIII	TCCGGA	1 cut(s)	1033
AciI	CCGC	5 cut(s)	199, 425, 699, 749, 1146
AcoI	YGGCCR	2 cut(s)	3, 93
AcsI	RAATTY	3 cut(s)	758, 838, 860
AcuI	CTGAAG	2 cut(s)	542, 804
AfaI	GTAC	3 cut(s)	123, 403, 721
AgsI	TTSAA	7 cut(s)	205, 371, 415, 514, 607, 764, 1126
AjuI	GAANNNNNNNTTGG	2 cut(s)	1045, 1077
AluBI	AGCT	5 cut(s)	23, 236, 286, 421, 1186
AluI	AGCT	5 cut(s)	23, 236, 286, 421, 1186
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	749, 1100
AlwNI	CAGNNNCTG	1 cut(s)	175
Aor13HI	TCCGGA	1 cut(s)	1033
AoxI	GGCC	3 cut(s)	3, 93, 224
ApeKI	GCWGC	4 cut(s)	88, 117, 169, 418
ApoI	RAATTY	3 cut(s)	758, 838, 860
Asp700I	GAANNNNTTC	1 cut(s)	996
AspLEI	GCGC	2 cut(s)	1142, 1150
AspS9I	GGNCC	1 cut(s)	906
AsuHPI	GGTGA	3 cut(s)	275, 1001, 1110
AvaII	GGWCC	1 cut(s)	906
BanII	GRGCYC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	4 cut(s)	75, 104, 181, 430
BccI	CCATC	3 cut(s)	254, 763, 823
BcgI	CGANNNNNNTGC	2 cut(s)	99, 133
BciVI	GTATCC	1 cut(s)	303
BcoDI	GTCTC	2 cut(s)	749, 1100
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	303
BisI	GCNGC	4 cut(s)	89, 118, 170, 419
BlsI	GCNGC	4 cut(s)	90, 119, 171, 420
Bme18I	GGWCC	1 cut(s)	906
BmgT120I	GGNCC	1 cut(s)	906
BmiI	GGNNCC	1 cut(s)	395
BmsI	GCATC	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	1 cut(s)	1017
BsaWI	WCCGGW	2 cut(s)	295, 1033
Bse118I	RCCGGY	2 cut(s)	5, 91
Bse3DI	GCAATG	3 cut(s)	66, 352, 501
Bse8I	GATNNNNATC	1 cut(s)	606
BseAI	TCCGGA	1 cut(s)	1033
BseDI	CCNNGG	1 cut(s)	1017
BseJI	GATNNNNATC	1 cut(s)	606
BseMI	GCAATG	3 cut(s)	66, 352, 501
BseMII	CTCAG	4 cut(s)	62, 63, 167, 1100
BseRI	GAGGAG	4 cut(s)	200, 767, 1074, 1088
BseXI	GCAGC	4 cut(s)	75, 104, 181, 430
Bsh1236I	CGCG	2 cut(s)	749, 1148
BshFI	GGCC	3 cut(s)	5, 95, 226
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	5 cut(s)	6, 14, 92, 296, 1034
BsiWI	CGTACG	1 cut(s)	121
BsmAI	GTCTC	2 cut(s)	749, 1100
BsnI	GGCC	3 cut(s)	5, 95, 226
Bso31I	GGTCTC	1 cut(s)	749
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp13I	TCCGGA	1 cut(s)	1033
Bsp143I	GATC	2 cut(s)	144, 330
BspACI	CCGC	5 cut(s)	199, 425, 699, 749, 1146
BspANI	GGCC	3 cut(s)	5, 95, 226
BspCNI	CTCAG	4 cut(s)	61, 64, 168, 1099
BspEI	TCCGGA	1 cut(s)	1033
BspFNI	CGCG	2 cut(s)	749, 1148
BspLI	GGNNCC	1 cut(s)	395
BspQI	GCTCTTC	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	749
BsrDI	GCAATG	3 cut(s)	66, 352, 501
BsrFI	RCCGGY	2 cut(s)	5, 91
BssAI	RCCGGY	2 cut(s)	5, 91
BssECI	CCNNGG	1 cut(s)	1017
BssMI	GATC	2 cut(s)	144, 330
BssNAI	GTATAC	1 cut(s)	853
BssT1I	CCWWGG	1 cut(s)	1017
Bst1107I	GTATAC	1 cut(s)	853
Bst4CI	ACNGT	2 cut(s)	40, 81
Bst6I	CTCTTC	2 cut(s)	537, 615
BstC8I	GCNNGC	5 cut(s)	7, 11, 93, 138, 919
BstDEI	CTNAG	5 cut(s)	48, 72, 176, 695, 1086
BstFNI	CGCG	2 cut(s)	749, 1148
BstHHI	GCGC	2 cut(s)	1142, 1150
BstKTI	GATC	2 cut(s)	147, 333
BstMAI	GTCTC	2 cut(s)	749, 1100
BstMBI	GATC	2 cut(s)	144, 330
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 424, 649
BstNSI	RCATGY	2 cut(s)	921, 961
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	2 cut(s)	749, 1148
BstV1I	GCAGC	4 cut(s)	75, 104, 181, 430
BstXI	CCANNNNNNTGG	1 cut(s)	863
BstZ17I	GTATAC	1 cut(s)	853
BsuI	GTATCC	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	5, 95, 226
BtsIMutI	CAGTG	1 cut(s)	1094
Cac8I	GCNNGC	5 cut(s)	7, 11, 93, 138, 919
CaiI	CAGNNNCTG	1 cut(s)	175
CfoI	GCGC	2 cut(s)	1142, 1150
Cfr10I	RCCGGY	2 cut(s)	5, 91
Cfr13I	GGNCC	1 cut(s)	906
Csp6I	GTAC	3 cut(s)	122, 402, 720
CviAII	CATG	6 cut(s)	132, 585, 653, 857, 918, 958
CviQI	GTAC	3 cut(s)	122, 402, 720
DdeI	CTNAG	5 cut(s)	48, 72, 176, 695, 1086
DpnI	GATC	2 cut(s)	146, 332
DpnII	GATC	2 cut(s)	144, 330
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	2 cut(s)	3, 93
Eam1104I	CTCTTC	2 cut(s)	537, 615
EarI	CTCTTC	2 cut(s)	537, 615
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	1017
Eco147I	AGGCCT	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	288
Eco31I	GGTCTC	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	906
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	542, 804
EcoICRI	GAGCTC	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	838
EcoT14I	CCWWGG	1 cut(s)	1017
EcoT22I	ATGCAT	2 cut(s)	923, 977
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	1017
FaeI	CATG	6 cut(s)	135, 588, 656, 860, 921, 961
FalI	AAGNNNNNCTT	4 cut(s)	641, 673, 1045, 1077
FatI	CATG	6 cut(s)	131, 584, 652, 856, 917, 957
FauI	CCCGC	1 cut(s)	692
FblI	GTMKAC	1 cut(s)	852
Fnu4HI	GCNGC	4 cut(s)	89, 118, 170, 419
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	4 cut(s)	89, 118, 170, 419
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	2 cut(s)	1141, 1149
GluI	GCNGC	4 cut(s)	89, 118, 170, 419
HaeIII	GGCC	3 cut(s)	5, 95, 226
HapII	CCGG	5 cut(s)	6, 14, 92, 296, 1034
HhaI	GCGC	2 cut(s)	1142, 1150
Hin1II	CATG	6 cut(s)	135, 588, 656, 860, 921, 961
Hin6I	GCGC	2 cut(s)	1140, 1148
HinP1I	GCGC	2 cut(s)	1140, 1148
HincII	GTYRAC	2 cut(s)	187, 963
HindII	GTYRAC	2 cut(s)	187, 963
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	3 cut(s)	17, 494, 899
HpaII	CCGG	5 cut(s)	6, 14, 92, 296, 1034
HphI	GGTGA	3 cut(s)	275, 1001, 1110
Hpy166II	GTNNAC	3 cut(s)	187, 853, 963
Hpy188I	TCNGA	2 cut(s)	218, 307
Hpy188III	TCNNGA	2 cut(s)	314, 1034
Hpy8I	GTNNAC	3 cut(s)	187, 853, 963
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	5 cut(s)	237, 241, 701, 710, 874
HpyCH4III	ACNGT	2 cut(s)	40, 81
HpyCH4IV	ACGT	2 cut(s)	267, 302
HpyCH4V	TGCA	9 cut(s)	272, 345, 506, 633, 917, 921, 975, 1134, 1175
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 424, 649
HpyF3I	CTNAG	5 cut(s)	48, 72, 176, 695, 1086
HpySE526I	ACGT	2 cut(s)	267, 302
Hsp92II	CATG	6 cut(s)	135, 588, 656, 860, 921, 961
HspAI	GCGC	2 cut(s)	1140, 1148
Kpn2I	TCCGGA	1 cut(s)	1033
KroI	GCCGGC	2 cut(s)	5, 91
KroNI	GCCGGC	2 cut(s)	7, 93
Kzo9I	GATC	2 cut(s)	144, 330
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	3 cut(s)	28, 802, 1183
Lsp1109I	GCAGC	4 cut(s)	75, 104, 181, 430
LweI	GCATC	1 cut(s)	642
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	2 cut(s)	267, 302
MaeIII	GTNAC	6 cut(s)	263, 274, 298, 377, 980, 1057
MalI	GATC	2 cut(s)	146, 332
MboI	GATC	2 cut(s)	144, 330
MboII	GAAGA	4 cut(s)	554, 632, 989, 1049
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	4 cut(s)	758, 838, 860, 1066
MmeI	TCCRAC	1 cut(s)	196
Mph1103I	ATGCAT	2 cut(s)	923, 977
MroI	TCCGGA	1 cut(s)	1033
MroNI	GCCGGC	2 cut(s)	5, 91
MroXI	GAANNNNTTC	1 cut(s)	996
MseI	TTAA	2 cut(s)	165, 951
MslI	CAYNNNNRTG	2 cut(s)	638, 970
MspI	CCGG	5 cut(s)	6, 14, 92, 296, 1034
MvnI	CGCG	2 cut(s)	749, 1148
MwoI	GCNNNNNNNGC	3 cut(s)	123, 424, 649
NaeI	GCCGGC	2 cut(s)	7, 93
NdeII	GATC	2 cut(s)	144, 330
NgoMIV	GCCGGC	2 cut(s)	5, 91
NlaIII	CATG	6 cut(s)	135, 588, 656, 860, 921, 961
NlaIV	GGNNCC	1 cut(s)	395
NmuCI	GTSAC	4 cut(s)	263, 274, 980, 1057
NsiI	ATGCAT	2 cut(s)	923, 977
NspI	RCATGY	2 cut(s)	921, 961
PaeI	GCATGC	1 cut(s)	921
PceI	AGGCCT	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	537
PdiI	GCCGGC	2 cut(s)	7, 93
PdmI	GAANNNNTTC	1 cut(s)	996
PfeI	GAWTC	3 cut(s)	17, 494, 899
Pfl23II	CGTACG	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	90, 119, 171, 420
PsiI	TTATAA	1 cut(s)	1198
Psp124BI	GAGCTC	1 cut(s)	288
PspLI	CGTACG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	395
PspPI	GGNCC	1 cut(s)	906
PstNI	CAGNNNCTG	1 cut(s)	175
RsaI	GTAC	3 cut(s)	123, 403, 721
RsaNI	GTAC	3 cut(s)	122, 402, 720
RseI	CAYNNNNRTG	2 cut(s)	638, 970
SacI	GAGCTC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	2 cut(s)	165, 951
SatI	GCNGC	4 cut(s)	89, 118, 170, 419
Sau3AI	GATC	2 cut(s)	144, 330
Sau96I	GGNCC	1 cut(s)	906
SduI	GDGCHC	1 cut(s)	288
SfaNI	GCATC	1 cut(s)	642
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	1 cut(s)	906
SmiMI	CAYNNNNRTG	2 cut(s)	638, 970
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SphI	GCATGC	1 cut(s)	921
Sse9I	AATT	4 cut(s)	758, 838, 860, 1066
SseBI	AGGCCT	1 cut(s)	226
SsiI	CCGC	5 cut(s)	199, 425, 699, 749, 1146
SspMI	CTAG	1 cut(s)	405
SstI	GAGCTC	1 cut(s)	288
StuI	AGGCCT	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	1017
TaaI	ACNGT	2 cut(s)	40, 81
TaiI	ACGT	2 cut(s)	270, 305
TaqI	TCGA	2 cut(s)	54, 109
TaqII	GACCGA	1 cut(s)	923
TasI	AATT	4 cut(s)	758, 838, 860, 1066
TatI	WGTACW	1 cut(s)	401
TfiI	GAWTC	3 cut(s)	17, 494, 899
Tru1I	TTAA	2 cut(s)	165, 951
Tru9I	TTAA	2 cut(s)	165, 951
TscAI	CASTG	1 cut(s)	1094
TseFI	GTSAC	4 cut(s)	263, 274, 980, 1057
TseI	GCWGC	4 cut(s)	88, 117, 169, 418
Tsp45I	GTSAC	4 cut(s)	263, 274, 980, 1057
TspDTI	ATGAA	4 cut(s)	555, 573, 873, 893
TspRI	CASTG	1 cut(s)	1094
VpaK11BI	GGWCC	1 cut(s)	906
XapI	RAATTY	3 cut(s)	758, 838, 860
XceI	RCATGY	2 cut(s)	921, 961
XmiI	GTMKAC	1 cut(s)	852
XmnI	GAANNNNTTC	1 cut(s)	996
XspI	CTAG	1 cut(s)	405
Zsp2I	ATGCAT	2 cut(s)	923, 977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.