Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011533

Physical Location & Seq

Genomic Coordinates Forward (+)

4464864 .. 4466166

Gene Structure 1303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031371

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCCGGCGAGCTGGTATCAGCTCCACAATCAAACAGAGTCAGTCCTGAGTTCGATGATGACAGCATTGCTGAGATACTGTCAAGGCTACAGGCCAAATCTCTACTTCGATTTCGCTGCGTACGCAAGTCATGGCGTGCTTTGATCTCCAATCCCTCTTTTGTTAAGCAACACCTGAGCAAAGTCAACACTAACCACCGCTTCAACCTCCTCGTCGGAACAAGGCCTTCCCAAGCTTCTGTAGTGAAGGTAGATGGTGATGGTGACGTTGCAGTCACACAAGAGCTCGAGTATCCGGTAACGTCTGACTTTCCTGACTTTTTTCCTGTGATCTATGGTTCTTGCAGTGGCTTGATTTGTATGGAGTTTGAAATGGGTAACATCATATTAAGGAACCCTTGTACTAGAGAGTTCAAGCAGCTACCGCAACCTGAACTTGATGGTAGAGAACATGACTTTGTGAGTTTCGTATATTTTGCTGGTTTTGGTTATGATTCCACCATTGCAGATTTCAAGGTAATACGAGCCACTAAAATATATGAAGAGCCAACCACACTTCAGCGGGGGTTCTTATTAAACGAAACTCTACATTGGGTAGCCCTTCTAAGCGGGGCAGAGTATGAGGAAGATACTTTGGGAATAGTGTCTATTCGTCTCGCGGAGGAGAAATTTCAAGTGATGGCACTATTTCCCTGTGGTCGCCCTGCTCCCAATGGCCCTGTATCTACTTCAGTTGTGATGGTTGGTGAAAGTGGAGAACAAGGGTGCAAAAATGGAGCTTATATCCTTATAACTACCAGCTCCTCCGGGTTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

273

Amino Acids

30.13

Weight (kDa)

5.08

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	19 - 55	3.9e-06	F-box domain
FBA_3	PF08268	92 - 181	2.1e-07	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03940
rosa_chinensis	RchiOBHm_Chr5g0006261 RchiOBHm_Chr5g0006271
rosa_laevigata	RLG00000031369 RLG00000031370 RLG00000031371
rosa_multiflora	Rmu_sc0002867.1_g000005 Rmu_sc0009371.1_g000001 Rmu_sc0037517.1_g000001 Rmu_sc0037517.1_g000002 Rmu_sc0037517.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069740 Rroxscaffold_1G00069760 Rroxscaffold_1G00069770 Rroxscaffold_1G00069780
rosa_rugosa	Rorug04G0419900 Rorug04G0420000
rosa_samantha	Rh5BG047300 Rh5BG047500
rosa_wichuraiana	Rw5G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	791
AasI	GACNNNNNNGTC	1 cut(s)	272
AccII	CGCG	1 cut(s)	659
AciI	CCGC	5 cut(s)	199, 425, 562, 609, 659
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	668
AcuI	CTGAAG	2 cut(s)	542, 714
AfaI	GTAC	2 cut(s)	123, 403
AgsI	TTSAA	5 cut(s)	205, 371, 415, 514, 674
AluBI	AGCT	7 cut(s)	13, 23, 236, 286, 421, 779, 801
AluI	AGCT	7 cut(s)	13, 23, 236, 286, 421, 779, 801
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	659
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	4 cut(s)	3, 93, 224, 715
ApeKI	GCWGC	2 cut(s)	117, 418
ApoI	RAATTY	1 cut(s)	668
AspS9I	GGNCC	1 cut(s)	716
AsuC2I	CCSGG	1 cut(s)	808
AsuHPI	GGTGA	3 cut(s)	269, 275, 758
AvaI	CYCGRG	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	104, 430
BccI	CCATC	5 cut(s)	248, 254, 434, 673, 733
BcgI	CGANNNNNNTGC	2 cut(s)	99, 133
BciVI	GTATCC	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	808
BcoDI	GTCTC	1 cut(s)	659
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	2 cut(s)	89, 240
BfuI	GTATCC	1 cut(s)	303
BisI	GCNGC	2 cut(s)	118, 419
BlsI	GCNGC	2 cut(s)	119, 420
Bme1390I	CCNGG	1 cut(s)	808
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	716
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	1 cut(s)	808
Bpu10I	CCTNAGC	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	808
BsaWI	WCCGGW	1 cut(s)	295
Bse118I	RCCGGY	1 cut(s)	5
Bse3DI	GCAATG	2 cut(s)	66, 501
BseMI	GCAATG	2 cut(s)	66, 501
BseMII	CTCAG	3 cut(s)	39, 63, 167
BseRI	GAGGAG	3 cut(s)	200, 677, 793
BseXI	GCAGC	2 cut(s)	104, 430
Bsh1236I	CGCG	1 cut(s)	659
BshFI	GGCC	4 cut(s)	5, 95, 226, 717
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	3 cut(s)	6, 296, 807
BsiWI	CGTACG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	659
BsmBI	CGTCTC	1 cut(s)	659
BsnI	GGCC	4 cut(s)	5, 95, 226, 717
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	144, 330
BspACI	CCGC	5 cut(s)	199, 425, 562, 609, 659
BspANI	GGCC	4 cut(s)	5, 95, 226, 717
BspCNI	CTCAG	3 cut(s)	40, 64, 168
BspFNI	CGCG	1 cut(s)	659
BspLI	GGNNCC	1 cut(s)	395
BspQI	GCTCTTC	1 cut(s)	537
BsrDI	GCAATG	2 cut(s)	66, 501
BsrFI	RCCGGY	1 cut(s)	5
BssAI	RCCGGY	1 cut(s)	5
BssMI	GATC	2 cut(s)	144, 330
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	1 cut(s)	537
BstC8I	GCNNGC	3 cut(s)	7, 11, 138
BstDEI	CTNAG	4 cut(s)	48, 72, 176, 605
BstFNI	CGCG	1 cut(s)	659
BstKTI	GATC	2 cut(s)	147, 333
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	2 cut(s)	144, 330
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 424
BstSCI	CCNGG	1 cut(s)	806
BstSFI	CTRYAG	2 cut(s)	89, 240
BstUI	CGCG	1 cut(s)	659
BstV1I	GCAGC	2 cut(s)	104, 430
BsuI	GTATCC	1 cut(s)	303
BsuRI	GGCC	4 cut(s)	5, 95, 226, 717
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	352
Cac8I	GCNNGC	3 cut(s)	7, 11, 138
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	716
Csp6I	GTAC	2 cut(s)	122, 402
CviAII	CATG	2 cut(s)	132, 452
CviQI	GTAC	2 cut(s)	122, 402
DdeI	CTNAG	4 cut(s)	48, 72, 176, 605
DpnI	GATC	2 cut(s)	146, 332
DpnII	GATC	2 cut(s)	144, 330
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Ecl136II	GAGCTC	1 cut(s)	286
Eco147I	AGGCCT	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	288
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	542, 714
Eco88I	CYCGRG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	288
Esp3I	CGTCTC	1 cut(s)	659
FaeI	CATG	2 cut(s)	135, 455
FalI	AAGNNNNNCTT	2 cut(s)	382, 414
FatI	CATG	2 cut(s)	131, 451
FauI	CCCGC	2 cut(s)	555, 602
Fnu4HI	GCNGC	2 cut(s)	118, 419
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	118, 419
FspBI	CTAG	1 cut(s)	405
GluI	GCNGC	2 cut(s)	118, 419
HaeIII	GGCC	4 cut(s)	5, 95, 226, 717
HapII	CCGG	3 cut(s)	6, 296, 807
Hin1II	CATG	2 cut(s)	135, 455
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	2 cut(s)	39, 494
HpaII	CCGG	3 cut(s)	6, 296, 807
HphI	GGTGA	3 cut(s)	269, 275, 758
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	218, 307
Hpy188III	TCNNGA	2 cut(s)	47, 314
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	237, 241, 611
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4IV	ACGT	2 cut(s)	267, 302
HpyCH4V	TGCA	4 cut(s)	272, 345, 506, 768
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 424
HpyF3I	CTNAG	4 cut(s)	48, 72, 176, 605
HpySE526I	ACGT	2 cut(s)	267, 302
Hsp92II	CATG	2 cut(s)	135, 455
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	144, 330
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	4 cut(s)	28, 712, 776, 806
Lsp1109I	GCAGC	2 cut(s)	104, 430
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	2 cut(s)	267, 302
MaeIII	GTNAC	4 cut(s)	263, 274, 298, 377
MalI	GATC	2 cut(s)	146, 332
MboI	GATC	2 cut(s)	144, 330
MboII	GAAGA	2 cut(s)	554, 638
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	1 cut(s)	668
MlyI	GAGTC	1 cut(s)	48
MmeI	TCCRAC	2 cut(s)	196, 792
MnlI	CCTC	6 cut(s)	166, 218, 221, 616, 655, 814
MroNI	GCCGGC	1 cut(s)	5
MseI	TTAA	3 cut(s)	165, 389, 575
MspA1I	CMGCKG	1 cut(s)	562
MspI	CCGG	3 cut(s)	6, 296, 807
MspR9I	CCNGG	1 cut(s)	808
MvnI	CGCG	1 cut(s)	659
MwoI	GCNNNNNNNGC	2 cut(s)	123, 424
NaeI	GCCGGC	1 cut(s)	7
NciI	CCSGG	1 cut(s)	808
NdeII	GATC	2 cut(s)	144, 330
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	2 cut(s)	135, 455
NlaIV	GGNNCC	1 cut(s)	395
NmuCI	GTSAC	2 cut(s)	263, 274
PaeR7I	CTCGAG	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	537
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	494
Pfl23II	CGTACG	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	119, 420
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PsiI	TTATAA	1 cut(s)	791
Psp124BI	GAGCTC	1 cut(s)	288
PspLI	CGTACG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	395
PspPI	GGNCC	1 cut(s)	716
PspXI	VCTCGAGB	1 cut(s)	287
RsaI	GTAC	2 cut(s)	123, 403
RsaNI	GTAC	2 cut(s)	122, 402
SacI	GAGCTC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	3 cut(s)	165, 389, 575
SatI	GCNGC	2 cut(s)	118, 419
Sau3AI	GATC	2 cut(s)	144, 330
Sau96I	GGNCC	1 cut(s)	716
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	808
SduI	GDGCHC	1 cut(s)	288
SfcI	CTRYAG	2 cut(s)	89, 240
Sfr274I	CTCGAG	1 cut(s)	287
SlaI	CTCGAG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	1 cut(s)	668
SseBI	AGGCCT	1 cut(s)	226
SsiI	CCGC	5 cut(s)	199, 425, 562, 609, 659
SspMI	CTAG	1 cut(s)	405
SstI	GAGCTC	1 cut(s)	288
StuI	AGGCCT	1 cut(s)	226
StyD4I	CCNGG	1 cut(s)	806
TaaI	ACNGT	1 cut(s)	81
TaiI	ACGT	2 cut(s)	270, 305
TaqI	TCGA	3 cut(s)	54, 109, 288
TasI	AATT	1 cut(s)	668
TatI	WGTACW	1 cut(s)	401
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	3 cut(s)	165, 389, 575
Tru9I	TTAA	3 cut(s)	165, 389, 575
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	2 cut(s)	263, 274
TseI	GCWGC	2 cut(s)	117, 418
Tsp45I	GTSAC	2 cut(s)	263, 274
TspDTI	ATGAA	1 cut(s)	555
TspRI	CASTG	1 cut(s)	352
XapI	RAATTY	1 cut(s)	668
XhoI	CTCGAG	1 cut(s)	287
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.