Rmu_sc0037517.1_g000002

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037517.1
OG0011533
Physical Location & Seq
Forward (+)
551 .. 1369
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037517.1_g000002.1.cds

Sequence Viewer

Length: 819 bp
atgggtaacatcatattatggaacccttgtactagagagttcaagcagctacggcaacctgaacttgatggtagagaatatgactttgtgagtttcgtatgttttgctggttttggttatgattccaccattgcagatttcaaggtaatacgagccactaaaatatatgaagagccaaccacacttcaggtatttacactcaaaacgggttcatggagaaccattacagctttcaatcgtattagggaagagagtgagtgcatcattctgcgagaaaagcagggcttcttactaaacgaaactctacattgggtagcccttctaagcggggcagagtatgaggaaggtacattgggaatagtgtctattggtctcgcggaggagaaatttcaagtgatggcactactcccctgtggtcgccctgctcccaatagccccgtatctacttcagttgtgatggttgggaattcgttgtttgtataccatgaatttggtatatggttgatgaaggaatatggggtagaggaatcttggaccgaagttgcatgcatttccccagaggttttacctcaacattttaacagcatgttgacacctttatgcatttgtgacaatggtgaagttcttctcaatcatagacaagccttgggagtatataatccggaagaaaagacatttagaagtgtcacttggaattgcgaggagtattctcctcagtgtgttgcttatgtggagactttagtttcaccattgaactgcattggcgcaaccgcgcaagtatgtgacaccaacatttcgagttttttccgttcactttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

272

Amino Acids

30.75

Weight (kDa)

4.8

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 480
AccII CGCG 2 cut(s) 377, 773
AccIII TCCGGA 1 cut(s) 661
AciI CCGC 3 cut(s) 327, 377, 771
AcsI RAATTY 3 cut(s) 386, 466, 488
AcuI CTGAAG 2 cut(s) 170, 432
AfaI GTAC 2 cut(s) 31, 349
AgsI TTSAA 5 cut(s) 43, 142, 235, 392, 754
AjuI GAANNNNNNNTTGG 2 cut(s) 673, 705
AluBI AGCT 2 cut(s) 49, 230
AluI AGCT 2 cut(s) 49, 230
Alw26I GTCTC 2 cut(s) 377, 728
Aor13HI TCCGGA 1 cut(s) 661
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 3 cut(s) 386, 466, 488
Asp700I GAANNNNTTC 1 cut(s) 624
AspLEI GCGC 2 cut(s) 767, 775
AspS9I GGNCC 1 cut(s) 534
AsuHPI GGTGA 2 cut(s) 629, 738
AvaII GGWCC 1 cut(s) 534
BbvI GCAGC 1 cut(s) 58
BccI CCATC 3 cut(s) 62, 391, 451
BceAI ACGGC 1 cut(s) 68
BcoDI GTCTC 2 cut(s) 377, 728
BfaI CTAG 1 cut(s) 33
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 534
BmgT120I GGNCC 1 cut(s) 534
BmiI GGNNCC 1 cut(s) 23
BmsI GCATC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 1 cut(s) 645
BsaWI WCCGGW 1 cut(s) 661
Bse3DI GCAATG 1 cut(s) 129
BseAI TCCGGA 1 cut(s) 661
BseDI CCNNGG 1 cut(s) 645
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 728
BseRI GAGGAG 3 cut(s) 395, 702, 716
BseXI GCAGC 1 cut(s) 58
Bsh1236I CGCG 2 cut(s) 377, 773
BsiSI CCGG 1 cut(s) 662
BsmAI GTCTC 2 cut(s) 377, 728
Bso31I GGTCTC 1 cut(s) 377
Bsp13I TCCGGA 1 cut(s) 661
BspACI CCGC 3 cut(s) 327, 377, 771
BspCNI CTCAG 1 cut(s) 727
BspEI TCCGGA 1 cut(s) 661
BspFNI CGCG 2 cut(s) 377, 773
BspLI GGNNCC 1 cut(s) 23
BspQI GCTCTTC 1 cut(s) 165
BspTNI GGTCTC 1 cut(s) 377
BsrDI GCAATG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 645
BssNAI GTATAC 1 cut(s) 481
BssT1I CCWWGG 1 cut(s) 645
Bst1107I GTATAC 1 cut(s) 481
Bst6I CTCTTC 2 cut(s) 165, 243
BstC8I GCNNGC 1 cut(s) 547
BstDEI CTNAG 2 cut(s) 323, 714
BstFNI CGCG 2 cut(s) 377, 773
BstHHI GCGC 2 cut(s) 767, 775
BstMAI GTCTC 2 cut(s) 377, 728
BstMWI GCNNNNNNNGC 2 cut(s) 52, 277
BstNSI RCATGY 2 cut(s) 549, 589
BstUI CGCG 2 cut(s) 377, 773
BstV1I GCAGC 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 491
BstZ17I GTATAC 1 cut(s) 481
BtsIMutI CAGTG 1 cut(s) 722
Cac8I GCNNGC 1 cut(s) 547
CfoI GCGC 2 cut(s) 767, 775
Cfr13I GGNCC 1 cut(s) 534
Csp6I GTAC 2 cut(s) 30, 348
CviAII CATG 4 cut(s) 213, 485, 546, 586
CviJI RGCY 8 cut(s) 49, 155, 175, 230, 285, 317, 435, 644
CviKI_1 RGCY 8 cut(s) 49, 155, 175, 230, 285, 317, 435, 644
CviQI GTAC 2 cut(s) 30, 348
DdeI CTNAG 2 cut(s) 323, 714
Eam1104I CTCTTC 2 cut(s) 165, 243
EarI CTCTTC 2 cut(s) 165, 243
Eco130I CCWWGG 1 cut(s) 645
Eco31I GGTCTC 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 534
Eco57I CTGAAG 2 cut(s) 170, 432
EcoRI GAATTC 1 cut(s) 466
EcoT14I CCWWGG 1 cut(s) 645
EcoT22I ATGCAT 2 cut(s) 551, 605
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 4 cut(s) 216, 488, 549, 589
FalI AAGNNNNNCTT 4 cut(s) 269, 301, 673, 705
FatI CATG 4 cut(s) 212, 484, 545, 585
FauI CCCGC 1 cut(s) 320
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 47
FspBI CTAG 1 cut(s) 33
GlaI GCGC 2 cut(s) 766, 774
GluI GCNGC 1 cut(s) 47
HapII CCGG 1 cut(s) 662
HhaI GCGC 2 cut(s) 767, 775
Hin1II CATG 4 cut(s) 216, 488, 549, 589
Hin6I GCGC 2 cut(s) 765, 773
HinP1I GCGC 2 cut(s) 765, 773
HincII GTYRAC 1 cut(s) 591
HindII GTYRAC 1 cut(s) 591
HinfI GANTC 2 cut(s) 122, 527
HpaII CCGG 1 cut(s) 662
HphI GGTGA 2 cut(s) 629, 738
Hpy166II GTNNAC 3 cut(s) 481, 591, 812
Hpy188III TCNNGA 1 cut(s) 662
Hpy8I GTNNAC 3 cut(s) 481, 591, 812
HpyAV CCTTC 3 cut(s) 329, 338, 502
HpyCH4V TGCA 6 cut(s) 134, 261, 545, 549, 603, 759
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 277
HpyF3I CTNAG 2 cut(s) 323, 714
Hsp92II CATG 4 cut(s) 216, 488, 549, 589
HspAI GCGC 2 cut(s) 765, 773
Kpn2I TCCGGA 1 cut(s) 661
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 1 cut(s) 430
LpnPI CCDG 8 cut(s) 72, 93, 173, 266, 424, 435, 570, 675
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 1 cut(s) 270
MaeI CTAG 1 cut(s) 33
MaeIII GTNAC 4 cut(s) 5, 608, 685, 782
MboII GAAGA 4 cut(s) 182, 260, 617, 677
MluCI AATT 4 cut(s) 386, 466, 488, 694
MnlI CCTC 7 cut(s) 334, 373, 517, 553, 579, 694, 723
Mph1103I ATGCAT 2 cut(s) 551, 605
MroI TCCGGA 1 cut(s) 661
MroXI GAANNNNTTC 1 cut(s) 624
MseI TTAA 2 cut(s) 579, 817
MslI CAYNNNNRTG 1 cut(s) 598
MspI CCGG 1 cut(s) 662
MvnI CGCG 2 cut(s) 377, 773
MwoI GCNNNNNNNGC 2 cut(s) 52, 277
NlaIII CATG 4 cut(s) 216, 488, 549, 589
NlaIV GGNNCC 1 cut(s) 23
NmuCI GTSAC 3 cut(s) 608, 685, 782
NsiI ATGCAT 2 cut(s) 551, 605
NspI RCATGY 2 cut(s) 549, 589
PaeI GCATGC 1 cut(s) 549
PciSI GCTCTTC 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 624
PfeI GAWTC 2 cut(s) 122, 527
PkrI GCNGC 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 23
PspPI GGNCC 1 cut(s) 534
RsaI GTAC 2 cut(s) 31, 349
RsaNI GTAC 2 cut(s) 30, 348
RseI CAYNNNNRTG 1 cut(s) 598
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 2 cut(s) 579, 817
SatI GCNGC 1 cut(s) 47
Sau96I GGNCC 1 cut(s) 534
SetI ASST 9 cut(s) 51, 61, 147, 192, 232, 349, 564, 571, 598
SfaNI GCATC 1 cut(s) 270
SinI GGWCC 1 cut(s) 534
SmiMI CAYNNNNRTG 1 cut(s) 598
SphI GCATGC 1 cut(s) 549
Sse9I AATT 4 cut(s) 386, 466, 488, 694
SsiI CCGC 3 cut(s) 327, 377, 771
SspMI CTAG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 645
TaqI TCGA 1 cut(s) 797
TaqII GACCGA 1 cut(s) 551
TasI AATT 4 cut(s) 386, 466, 488, 694
TatI WGTACW 1 cut(s) 29
TfiI GAWTC 2 cut(s) 122, 527
Tru1I TTAA 2 cut(s) 579, 817
Tru9I TTAA 2 cut(s) 579, 817
TscAI CASTG 1 cut(s) 722
TseFI GTSAC 3 cut(s) 608, 685, 782
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 3 cut(s) 608, 685, 782
TspDTI ATGAA 4 cut(s) 183, 201, 501, 521
TspGWI ACGGA 1 cut(s) 797
TspRI CASTG 1 cut(s) 722
VpaK11BI GGWCC 1 cut(s) 534
XapI RAATTY 3 cut(s) 386, 466, 488
XceI RCATGY 2 cut(s) 549, 589
XmiI GTMKAC 1 cut(s) 480
XmnI GAANNNNTTC 1 cut(s) 624
XspI CTAG 1 cut(s) 33
Zsp2I ATGCAT 2 cut(s) 551, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.