Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002867.1

Orthogroup ID

OG0011533

Physical Location & Seq

Genomic Coordinates Reverse (-)

17045 .. 22826

Gene Structure 5782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002867.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgagaaggtcaatctcaactcccagatccgaaaccaacaccgtcggtcatgacttcgacgatgatatcattgttgagatactgttaaagctaccggccaaatccctactacagtttcgctgtgtttgcaagtcatggcgtgctttgatctccgatcccacttttgtccggaatcgcctccgcaaagtcaacaccaaccacttcaacctccttgtaggaacgaggcccttccaaggtgatgtactgtctaagcaagatgatggtggccagtggcggaaccaggatacaaaagtggggtgggctaatctaagattaggttttgatattgatatcgtggaggccaccctaactcgttttctttcgatcaatcattcatttcataagaggagacgccgaattgcaagcgcagaaagatccgtgagggaggaagaaggaggtggccttacagtcttgtttgcgtcggatatgtcctgtgagagagagccgtgcgtccgtgcaagtgaagtgaagagagagagagagagagcagtcctcggcgtctcagcttcacgggctcacggcgtctcagcgtcatggctatggcggaggagagggaaaaaggaggaggaggcttcagtcgttcagaacttcagatcaagtaaattagaaatgaggctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

219

Amino Acids

25.15

Weight (kDa)

10.21

Isoelectric Point (pI)

55.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03940
rosa_chinensis	RchiOBHm_Chr5g0006261 RchiOBHm_Chr5g0006271
rosa_laevigata	RLG00000031369 RLG00000031370 RLG00000031371
rosa_multiflora	Rmu_sc0002867.1_g000005 Rmu_sc0009371.1_g000001 Rmu_sc0037517.1_g000001 Rmu_sc0037517.1_g000002 Rmu_sc0037517.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069740 Rroxscaffold_1G00069760 Rroxscaffold_1G00069770 Rroxscaffold_1G00069780
rosa_rugosa	Rorug04G0419900 Rorug04G0420000
rosa_samantha	Rh5BG047300 Rh5BG047500
rosa_wichuraiana	Rw5G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	168
AciI	CCGC	3 cut(s)	181, 274, 583
AclWI	GGATC	3 cut(s)	21, 149, 408
AcoI	YGGCCR	2 cut(s)	96, 265
AcuI	CTGAAG	2 cut(s)	597, 613
AcyI	GRCGYC	3 cut(s)	391, 537, 561
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	2 cut(s)	91, 545
AluI	AGCT	2 cut(s)	91, 545
Alw26I	GTCTC	3 cut(s)	382, 544, 568
AlwI	GGATC	3 cut(s)	21, 149, 408
Aor13HI	TCCGGA	1 cut(s)	168
AoxI	GGCC	5 cut(s)	96, 224, 265, 339, 439
AspLEI	GCGC	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	248
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
BalI	TGGCCA	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	556
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	2 cut(s)	469, 574
BciT130I	CCWGG	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	277
BcoDI	GTCTC	3 cut(s)	382, 544, 568
BfmI	CTRYAG	1 cut(s)	110
BfuI	GTATCC	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	281
BplI	GAGNNNNNCTC	2 cut(s)	516, 548
BsaHI	GRCGYC	3 cut(s)	391, 537, 561
BsaJI	CCNNGG	2 cut(s)	232, 532
BsaWI	WCCGGW	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	268
BseAI	TCCGGA	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	232, 532
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	555, 579
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	4 cut(s)	400, 601, 617, 620
BshFI	GGCC	5 cut(s)	98, 226, 267, 341, 441
BsiSI	CCGG	2 cut(s)	95, 169
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	3 cut(s)	382, 544, 568
BsmBI	CGTCTC	3 cut(s)	382, 544, 568
BsnI	GGCC	5 cut(s)	98, 226, 267, 341, 441
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp13I	TCCGGA	1 cut(s)	168
Bsp143I	GATC	6 cut(s)	26, 147, 154, 363, 413, 632
BspACI	CCGC	3 cut(s)	181, 274, 583
BspANI	GGCC	5 cut(s)	98, 226, 267, 341, 441
BspCNI	CTCAG	2 cut(s)	554, 578
BspEI	TCCGGA	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	278
BspPI	GGATC	3 cut(s)	21, 149, 408
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	232, 532
BssMI	GATC	6 cut(s)	26, 147, 154, 363, 413, 632
BssNI	GRCGYC	3 cut(s)	391, 537, 561
BssT1I	CCWWGG	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	5 cut(s)	43, 84, 114, 246, 448
Bst6I	CTCTTC	1 cut(s)	503
BstACI	GRCGYC	3 cut(s)	391, 537, 561
BstC8I	GCNNGC	2 cut(s)	141, 403
BstDEI	CTNAG	4 cut(s)	249, 308, 541, 565
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	6 cut(s)	29, 150, 157, 366, 416, 635
BstMAI	GTCTC	3 cut(s)	382, 544, 568
BstMBI	GATC	6 cut(s)	26, 147, 154, 363, 413, 632
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 551
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	110
BstX2I	RGATCY	2 cut(s)	26, 413
BstYI	RGATCY	2 cut(s)	26, 413
BsuI	GTATCC	1 cut(s)	277
BsuRI	GGCC	5 cut(s)	98, 226, 267, 341, 441
BtsIMutI	CAGTG	1 cut(s)	275
Cac8I	GCNNGC	2 cut(s)	141, 403
CciI	TCATGA	1 cut(s)	49
CfoI	GCGC	1 cut(s)	407
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	225
CseI	GACGC	6 cut(s)	399, 447, 478, 526, 550, 558
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	3 cut(s)	50, 135, 573
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	4 cut(s)	249, 308, 541, 565
DpnI	GATC	6 cut(s)	28, 149, 156, 365, 415, 634
DpnII	GATC	6 cut(s)	26, 147, 154, 363, 413, 632
EaeI	YGGCCR	2 cut(s)	96, 265
Eam1104I	CTCTTC	1 cut(s)	503
EarI	CTCTTC	1 cut(s)	503
EciI	GGCGGA	2 cut(s)	289, 598
Eco130I	CCWWGG	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	556
Eco32I	GATATC	2 cut(s)	67, 331
Eco57I	CTGAAG	2 cut(s)	597, 613
EcoO109I	RGGNCCY	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	279
EcoRV	GATATC	2 cut(s)	67, 331
EcoT14I	CCWWGG	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	232
Esp3I	CGTCTC	3 cut(s)	382, 544, 568
FaeI	CATG	3 cut(s)	53, 138, 576
FaiI	YATR	6 cut(s)	51, 136, 381, 467, 574, 580
FatI	CATG	3 cut(s)	49, 134, 572
FriOI	GRGCYC	1 cut(s)	556
GlaI	GCGC	1 cut(s)	406
HaeIII	GGCC	5 cut(s)	98, 226, 267, 341, 441
HapII	CCGG	2 cut(s)	95, 169
HgaI	GACGC	6 cut(s)	399, 447, 478, 526, 550, 558
HhaI	GCGC	1 cut(s)	407
Hin1I	GRCGYC	3 cut(s)	391, 537, 561
Hin1II	CATG	3 cut(s)	53, 138, 576
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	172
HpaII	CCGG	2 cut(s)	95, 169
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	5 cut(s)	31, 154, 463, 624, 632
Hpy188III	TCNNGA	2 cut(s)	50, 169
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	3 cut(s)	47, 62, 463
HpyAV	CCTTC	2 cut(s)	238, 425
HpyCH4III	ACNGT	5 cut(s)	43, 84, 114, 246, 448
HpyCH4V	TGCA	3 cut(s)	129, 401, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 551
HpyF3I	CTNAG	4 cut(s)	249, 308, 541, 565
Hsp92I	GRCGYC	3 cut(s)	391, 537, 561
Hsp92II	CATG	3 cut(s)	53, 138, 576
HspAI	GCGC	1 cut(s)	405
Kpn2I	TCCGGA	1 cut(s)	168
Kzo9I	GATC	6 cut(s)	26, 147, 154, 363, 413, 632
LpnPI	CCDG	7 cut(s)	37, 108, 182, 266, 281, 293, 484
MalI	GATC	6 cut(s)	28, 149, 156, 365, 415, 634
MboI	GATC	6 cut(s)	26, 147, 154, 363, 413, 632
MboII	GAAGA	2 cut(s)	440, 520
MflI	RGATCY	2 cut(s)	26, 413
MhlI	GDGCHC	1 cut(s)	556
MlsI	TGGCCA	1 cut(s)	267
MluCI	AATT	2 cut(s)	396, 641
MluNI	TGGCCA	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	441
Mox20I	TGGCCA	1 cut(s)	267
MroI	TCCGGA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	267
MseI	TTAA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	577
Msp20I	TGGCCA	1 cut(s)	267
MspI	CCGG	2 cut(s)	95, 169
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	2 cut(s)	126, 551
NdeII	GATC	6 cut(s)	26, 147, 154, 363, 413, 632
NlaIII	CATG	3 cut(s)	53, 138, 576
NlaIV	GGNNCC	1 cut(s)	278
NmeAIII	GCCGAG	1 cut(s)	513
PagI	TCATGA	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	225
PsuI	RGATCY	2 cut(s)	26, 413
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	577
SaqAI	TTAA	1 cut(s)	86
Sau3AI	GATC	6 cut(s)	26, 147, 154, 363, 413, 632
Sau96I	GGNCC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	556
SetI	ASST	7 cut(s)	11, 93, 210, 238, 319, 439, 547
SfcI	CTRYAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	577
Sse9I	AATT	2 cut(s)	396, 641
SsiI	CCGC	3 cut(s)	181, 274, 583
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	5 cut(s)	43, 84, 114, 246, 448
TaqI	TCGA	2 cut(s)	57, 362
TaqII	GACCGA	1 cut(s)	35
TasI	AATT	2 cut(s)	396, 641
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	363, 368
TspGWI	ACGGA	2 cut(s)	406, 482
TspRI	CASTG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.