Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007491

Physical Location & Seq

Genomic Coordinates Forward (+)

3856085 .. 3859646

Gene Structure 3562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06710.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGATACACAGAAATGGTTAACGGTGATTACTGTTTTGGTGGTTTCATTATCACAATCTTGTGTTCTTGGAGCGCCACAAGTACCTTGCTTCTTCATTTTCGGTGATTCACTGGCCGATAACGGCAATAACAACCTCCTCGGGACTTTGGCCAAAGTGAATTACGCGCCGTACGGAATTGATTATCCTGGTGGAGTACCAACAGGAAGATTTTCCAATGGCAAAACTACTGTTGATATACTAGCTGAATTTTTGGGATTTGAGACTCCTATCCCACCATTTGCTACTACAATAGGACAGGACATTGTTAAAGGTCTCAATTATGCATCCGGCGCCGCAGGGAACTGGCTCCAATCTGGGTGGTCACATCAGCTTAGATCACCAGTTACAGAATCACCAAATCACAATCTTGTGCTTCGAAATAAACAACAGACCTTGCAGTACTTGAACAAGTGCCTATACTCAATCGGAATGGGTAACAACGATTACATTAACAATTACTTCATGCCTCAGTTCTTTCCCACCAGCAAGAGATATACCCCTGAACAATATGCTTCAGTTCTTATTGACCAATATACTCGCCAAATACTGACCTTGTACAACCAATATGGAGCAAGGAAGGTTGTCTTGGTTGGACTGGGACTAATAGGTTGCACTCCTAATGCAATTTCGAAAGCGAATGGGACAGCATGTGTAGATGAATTGAACAGTGCAGCCCAGCTTTTTAACCAAAAGCTTGTATCTCTTGTTAATCAGCTCAACACCAATTTGACTAATGCAAAATTCATCTATGTCAACAGTACTGGAATGAGTTCAGGGGATCCTTCTTCTGTTGGATTCAAGGTTTTGACTGTTGGGTGTTGTCCGGTGGATAATGTCGGACAATGCATTCGTTCCGGAACTCCATGCCAGAATAGAGTGAGTATGTGTTCTGGGACTCATTCCGCCCTACTGAGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

321

Amino Acids

34.69

Weight (kDa)

8.63

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	34 - 277	3.9e-25	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007491)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710
malus_domestica	MD00G1093900.v1.1 MD10G1270800.v1.1 MD10G1270900.v1.1
prunus_persica	Prupe.4G070700_v2.0.a1 Prupe.4G070900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0012441 RchiOBHm_Chr5g0012451
rosa_laevigata	RLG00000031914 RLG00000031916
rosa_multiflora	Rmu_sc0003469.1_g000005
rosa_roxburghii	Rroxscaffold_1G00064210 Rroxscaffold_1G00064220 Rroxscaffold_1G00064230
rosa_rugosa	Rorug05G0001500
rosa_samantha	Rh5AG095700 Rh5BG091900 Rh5BG092000 Rh5CG104700 Rh5DG091300
rosa_wichuraiana	Rw5G008370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	332
AccII	CGCG	1 cut(s)	167
AccIII	TCCGGA	1 cut(s)	896
AciI	CCGC	2 cut(s)	336, 945
AclWI	GGATC	2 cut(s)	815, 828
AcoI	YGGCCR	2 cut(s)	114, 150
AcsI	RAATTY	2 cut(s)	248, 782
AcuI	CTGAAG	1 cut(s)	540
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	6 cut(s)	84, 173, 198, 443, 599, 802
AfiI	CCNNNNNNNGG	1 cut(s)	954
AgsI	TTSAA	3 cut(s)	448, 706, 841
AjnI	CCWGG	1 cut(s)	187
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
AluBI	AGCT	5 cut(s)	245, 373, 721, 736, 757
AluI	AGCT	5 cut(s)	245, 373, 721, 736, 757
Alw26I	GTCTC	2 cut(s)	257, 320
AlwI	GGATC	2 cut(s)	815, 828
Ama87I	CYCGRG	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	896
AoxI	GGCC	2 cut(s)	114, 150
ApeKI	GCWGC	1 cut(s)	713
ApoI	RAATTY	2 cut(s)	248, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	873, 905
Asp700I	GAANNNNTTC	2 cut(s)	211, 811
AspLEI	GCGC	3 cut(s)	76, 169, 335
AsuHPI	GGTGA	4 cut(s)	37, 116, 372, 387
AsuII	TTCGAA	2 cut(s)	418, 671
AvaI	CYCGRG	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	820
BanI	GGYRCC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	725
BceAI	ACGGC	2 cut(s)	139, 154
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	257, 320
BfaI	CTAG	1 cut(s)	242
BfoI	RGCGCY	2 cut(s)	77, 336
BisI	GCNGC	2 cut(s)	336, 714
BlsI	GCNGC	2 cut(s)	337, 715
BmcAI	AGTACT	2 cut(s)	443, 802
Bme1390I	CCNGG	1 cut(s)	189
BmeT110I	CYCGRG	1 cut(s)	140
BmiI	GGNNCC	3 cut(s)	334, 350, 822
BmrFI	CCNGG	1 cut(s)	189
BmrI	ACTGGG	1 cut(s)	647
BmsI	GCATC	1 cut(s)	335
BmuI	ACTGGG	1 cut(s)	647
Bpu14I	TTCGAA	2 cut(s)	418, 671
BsaHI	GRCGYC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	139
BsaWI	WCCGGW	2 cut(s)	865, 896
Bsc4I	CCNNNNNNNGG	1 cut(s)	954
Bse1I	ACTGG	5 cut(s)	117, 350, 383, 642, 808
BseAI	TCCGGA	1 cut(s)	896
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	326
BseLI	CCNNNNNNNGG	1 cut(s)	954
BseMII	CTCAG	2 cut(s)	524, 944
BseNI	ACTGG	5 cut(s)	117, 350, 383, 642, 808
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	725
BseYI	CCCAGC	1 cut(s)	717
BsgI	GTGCAG	1 cut(s)	732
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	116, 152
BshNI	GGYRCC	1 cut(s)	332
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	3 cut(s)	330, 866, 897
BsiWI	CGTACG	1 cut(s)	171
BslFI	GGGAC	4 cut(s)	157, 654, 697, 949
BslI	CCNNNNNNNGG	1 cut(s)	954
BsmAI	GTCTC	2 cut(s)	257, 320
BsmFI	GGGAC	4 cut(s)	157, 654, 697, 949
BsmI	GAATGC	1 cut(s)	888
BsnI	GGCC	2 cut(s)	116, 152
Bso31I	GGTCTC	1 cut(s)	320
BsoBI	CYCGRG	1 cut(s)	140
Bsp119I	TTCGAA	2 cut(s)	418, 671
Bsp13I	TCCGGA	1 cut(s)	896
Bsp1407I	TGTACA	1 cut(s)	597
Bsp143I	GATC	2 cut(s)	377, 820
BspACI	CCGC	2 cut(s)	336, 945
BspANI	GGCC	2 cut(s)	116, 152
BspCNI	CTCAG	2 cut(s)	523, 945
BspEI	TCCGGA	1 cut(s)	896
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	3 cut(s)	334, 350, 822
BspPI	GGATC	2 cut(s)	815, 828
BspT104I	TTCGAA	2 cut(s)	418, 671
BspT107I	GGYRCC	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	320
BsrGI	TGTACA	1 cut(s)	597
BsrI	ACTGG	5 cut(s)	117, 350, 383, 642, 808
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	2 cut(s)	377, 820
BssNI	GRCGYC	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	6 cut(s)	25, 34, 232, 710, 800, 853
BstACI	GRCGYC	1 cut(s)	333
BstAUI	TGTACA	1 cut(s)	597
BstBI	TTCGAA	2 cut(s)	418, 671
BstDEI	CTNAG	3 cut(s)	374, 510, 953
BstF5I	GGATG	1 cut(s)	326
BstFNI	CGCG	1 cut(s)	167
BstH2I	RGCGCY	2 cut(s)	77, 336
BstHHI	GCGC	3 cut(s)	76, 169, 335
BstKTI	GATC	2 cut(s)	380, 823
BstMAI	GTCTC	2 cut(s)	257, 320
BstMBI	GATC	2 cut(s)	377, 820
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	693
BstSCI	CCNGG	1 cut(s)	187
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	725
BstX2I	RGATCY	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	820
BsuRI	GGCC	2 cut(s)	116, 152
BtsCI	GGATG	1 cut(s)	326
BtsIMutI	CAGTG	2 cut(s)	110, 715
CfoI	GCGC	3 cut(s)	76, 169, 335
Csp6I	GTAC	6 cut(s)	83, 172, 197, 442, 598, 801
CspCI	CAANNNNNGTGG	2 cut(s)	341, 376
CviAII	CATG	3 cut(s)	505, 690, 906
CviJI	RGCY	9 cut(s)	116, 152, 245, 349, 373, 716, 721, 736, 757
CviKI_1	RGCY	9 cut(s)	116, 152, 245, 349, 373, 716, 721, 736, 757
CviQI	GTAC	6 cut(s)	83, 172, 197, 442, 598, 801
DdeI	CTNAG	3 cut(s)	374, 510, 953
DinI	GGCGCC	1 cut(s)	334
DpnI	GATC	2 cut(s)	379, 822
DpnII	GATC	2 cut(s)	377, 820
EaeI	YGGCCR	2 cut(s)	114, 150
EciI	GGCGGA	1 cut(s)	934
Eco31I	GGTCTC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	187
EcoT22I	ATGCAT	2 cut(s)	328, 890
EgeI	GGCGCC	1 cut(s)	334
EheI	GGCGCC	1 cut(s)	334
FaeI	CATG	3 cut(s)	508, 693, 909
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FaqI	GGGAC	4 cut(s)	157, 654, 697, 949
FatI	CATG	3 cut(s)	504, 689, 905
Fnu4HI	GCNGC	2 cut(s)	336, 714
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	2 cut(s)	336, 714
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	3 cut(s)	75, 168, 334
GluI	GCNGC	2 cut(s)	336, 714
GsaI	CCCAGC	1 cut(s)	721
HaeII	RGCGCY	2 cut(s)	77, 336
HaeIII	GGCC	2 cut(s)	116, 152
HapII	CCGG	3 cut(s)	330, 866, 897
HhaI	GCGC	3 cut(s)	76, 169, 335
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	3 cut(s)	508, 693, 909
Hin6I	GCGC	3 cut(s)	74, 167, 333
HinP1I	GCGC	3 cut(s)	74, 167, 333
HincII	GTYRAC	2 cut(s)	21, 796
HindII	GTYRAC	2 cut(s)	21, 796
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	5 cut(s)	107, 265, 392, 837, 937
HpaI	GTTAAC	1 cut(s)	21
HpaII	CCGG	3 cut(s)	330, 866, 897
HphI	GGTGA	4 cut(s)	37, 116, 372, 387
Hpy166II	GTNNAC	2 cut(s)	21, 796
Hpy188I	TCNGA	2 cut(s)	470, 881
Hpy188III	TCNNGA	2 cut(s)	142, 897
Hpy8I	GTNNAC	2 cut(s)	21, 796
HpyAV	CCTTC	2 cut(s)	613, 834
HpyCH4III	ACNGT	6 cut(s)	25, 34, 232, 710, 800, 853
HpyCH4V	TGCA	7 cut(s)	326, 439, 654, 665, 713, 779, 888
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	3 cut(s)	374, 510, 953
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	3 cut(s)	508, 693, 909
HspAI	GCGC	3 cut(s)	74, 167, 333
KasI	GGCGCC	1 cut(s)	332
Kpn2I	TCCGGA	1 cut(s)	896
KspAI	GTTAAC	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	377, 820
LmnI	GCTCC	3 cut(s)	71, 354, 611
Lsp1109I	GCAGC	1 cut(s)	725
LweI	GCATC	1 cut(s)	335
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	3 cut(s)	363, 385, 476
MalI	GATC	2 cut(s)	379, 822
MboI	GATC	2 cut(s)	377, 820
MboII	GAAGA	3 cut(s)	85, 219, 819
MflI	RGATCY	1 cut(s)	820
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	9 cut(s)	160, 177, 248, 319, 496, 666, 701, 766, 782
MluNI	TGGCCA	1 cut(s)	152
Mly113I	GGCGCC	1 cut(s)	333
MlyI	GAGTC	2 cut(s)	259, 931
MmeI	TCCRAC	3 cut(s)	613, 814, 859
MnlI	CCTC	4 cut(s)	146, 149, 519, 948
Mox20I	TGGCCA	1 cut(s)	152
Mph1103I	ATGCAT	2 cut(s)	328, 890
MroI	TCCGGA	1 cut(s)	896
MroXI	GAANNNNTTC	2 cut(s)	211, 811
MscI	TGGCCA	1 cut(s)	152
MseI	TTAA	5 cut(s)	20, 309, 492, 726, 750
MslI	CAYNNNNRTG	1 cut(s)	13
Msp20I	TGGCCA	1 cut(s)	152
MspI	CCGG	3 cut(s)	330, 866, 897
MspR9I	CCNGG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	888
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	332
NarI	GGCGCC	1 cut(s)	333
NdeII	GATC	2 cut(s)	377, 820
NlaIII	CATG	3 cut(s)	508, 693, 909
NlaIV	GGNNCC	3 cut(s)	334, 350, 822
NmuCI	GTSAC	1 cut(s)	363
NsiI	ATGCAT	2 cut(s)	328, 890
NspI	RCATGY	1 cut(s)	693
NspV	TTCGAA	2 cut(s)	418, 671
PctI	GAATGC	1 cut(s)	888
PdmI	GAANNNNTTC	2 cut(s)	211, 811
PfeI	GAWTC	3 cut(s)	107, 392, 837
Pfl23II	CGTACG	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	337, 715
PleI	GAGTC	2 cut(s)	259, 931
PluTI	GGCGCC	1 cut(s)	336
PpsI	GAGTC	2 cut(s)	259, 931
Psp6I	CCWGG	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	717
PspGI	CCWGG	1 cut(s)	187
PspLI	CGTACG	1 cut(s)	171
PspN4I	GGNNCC	3 cut(s)	334, 350, 822
PsuI	RGATCY	1 cut(s)	820
RsaI	GTAC	6 cut(s)	84, 173, 198, 443, 599, 802
RsaNI	GTAC	6 cut(s)	83, 172, 197, 442, 598, 801
RseI	CAYNNNNRTG	1 cut(s)	13
SaqAI	TTAA	5 cut(s)	20, 309, 492, 726, 750
SatI	GCNGC	2 cut(s)	336, 714
Sau3AI	GATC	2 cut(s)	377, 820
ScaI	AGTACT	2 cut(s)	443, 802
SchI	GAGTC	2 cut(s)	259, 931
ScrFI	CCNGG	1 cut(s)	189
SfaNI	GCATC	1 cut(s)	335
SfoI	GGCGCC	1 cut(s)	334
SfuI	TTCGAA	2 cut(s)	418, 671
SmiMI	CAYNNNNRTG	1 cut(s)	13
Sse9I	AATT	9 cut(s)	160, 177, 248, 319, 496, 666, 701, 766, 782
SsiI	CCGC	2 cut(s)	336, 945
SspDI	GGCGCC	1 cut(s)	332
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	6 cut(s)	25, 34, 232, 710, 800, 853
TaqI	TCGA	2 cut(s)	418, 671
TasI	AATT	9 cut(s)	160, 177, 248, 319, 496, 666, 701, 766, 782
TatI	WGTACW	3 cut(s)	441, 597, 800
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	3 cut(s)	107, 392, 837
Tru1I	TTAA	5 cut(s)	20, 309, 492, 726, 750
Tru9I	TTAA	5 cut(s)	20, 309, 492, 726, 750
TscAI	CASTG	2 cut(s)	117, 715
TseFI	GTSAC	1 cut(s)	363
TseI	GCWGC	1 cut(s)	713
Tsp45I	GTSAC	1 cut(s)	363
TspDTI	ATGAA	5 cut(s)	36, 85, 493, 714, 775
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	2 cut(s)	117, 715
XapI	RAATTY	2 cut(s)	248, 782
XceI	RCATGY	1 cut(s)	693
XmnI	GAANNNNTTC	2 cut(s)	211, 811
XspI	CTAG	1 cut(s)	242
ZrmI	AGTACT	2 cut(s)	443, 802
Zsp2I	ATGCAT	2 cut(s)	328, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.