Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007491

Physical Location & Seq

Genomic Coordinates Forward (+)

86037113 .. 86049603

Gene Structure 12491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGACAAAAGATACACTGAAATGGTTAATGGTGATTGCTGTTTTGGTGGTTTCAATATCACAATCTTGTGTTCATGGAGCGCCACAAGTACCTTGCTTCTTCATTTTCGGTGATTCATTGGCTGATAACGGCAATAACAACCTCCTCACGACTTTGGCCAAAGTGAACTACGCGCCGTACGGAATTGATTATCCTGGTGGAGTACGAACAGGAAGATTTTCCAATGGCAAAACTACTGTTGATATACTTGGTCGTATTCCATCTCAATCTATTTCTAAATTGCATTCGTCTGAATTTCTGGGTTTTGAGACTCCCATCCCACCATTTGCAACTACCAAAGATCATGACATTGTTAAAGGTCTCAATTATGCCTCTGGCGCCGCAGGGATTCGAGCAGAAACTGGCTCCAATATGATCAGATCAAATGGTGATGGAGGGAGGGAGAGAGGGAGTCACGGGCTCGAGCATGCTGCTAACGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

160

Amino Acids

16.99

Weight (kDa)

7.83

Isoelectric Point (pI)

24.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007491)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710
malus_domestica	MD00G1093900.v1.1 MD10G1270800.v1.1 MD10G1270900.v1.1
prunus_persica	Prupe.4G070700_v2.0.a1 Prupe.4G070900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0012441 RchiOBHm_Chr5g0012451
rosa_laevigata	RLG00000031914 RLG00000031916
rosa_multiflora	Rmu_sc0003469.1_g000005
rosa_roxburghii	Rroxscaffold_1G00064210 Rroxscaffold_1G00064220 Rroxscaffold_1G00064230
rosa_rugosa	Rorug05G0001500
rosa_samantha	Rh5AG095700 Rh5BG091900 Rh5BG092000 Rh5CG104700 Rh5DG091300
rosa_wichuraiana	Rw5G008370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	377
AccII	CGCG	1 cut(s)	173
AciI	CCGC	1 cut(s)	381
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	293
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	3 cut(s)	90, 179, 204
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	1 cut(s)	54
AjnI	CCWGG	1 cut(s)	193
Alw26I	GTCTC	2 cut(s)	302, 365
AlwNI	CAGNNNCTG	1 cut(s)	401
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	293
Asp700I	GAANNNNTTC	1 cut(s)	217
AspLEI	GCGC	3 cut(s)	82, 175, 380
AsuHPI	GGTGA	3 cut(s)	43, 122, 440
AvaI	CYCGRG	1 cut(s)	461
BalI	TGGCCA	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	462
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	3 cut(s)	268, 323, 425
BceAI	ACGGC	2 cut(s)	145, 160
BcgI	CGANNNNNNTGC	1 cut(s)	452
BciT130I	CCWGG	1 cut(s)	195
BclI	TGATCA	1 cut(s)	414
BcoDI	GTCTC	2 cut(s)	302, 365
BfoI	RGCGCY	2 cut(s)	83, 381
BisI	GCNGC	2 cut(s)	381, 471
BlsI	GCNGC	2 cut(s)	382, 472
Bme1390I	CCNGG	1 cut(s)	195
BmeT110I	CYCGRG	1 cut(s)	461
BmiI	GGNNCC	2 cut(s)	379, 406
BmrFI	CCNGG	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	457
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	377
BsiHKCI	CYCGRG	1 cut(s)	461
BsiWI	CGTACG	1 cut(s)	177
BsmAI	GTCTC	2 cut(s)	302, 365
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	365
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	3 cut(s)	340, 414, 419
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	1 cut(s)	158
BspFNI	CGCG	1 cut(s)	173
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	379, 406
BspT107I	GGYRCC	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	406
BssMI	GATC	3 cut(s)	340, 414, 419
BssNI	GRCGYC	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	238
BstACI	GRCGYC	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	315
BstFNI	CGCG	1 cut(s)	173
BstH2I	RGCGCY	2 cut(s)	83, 381
BstHHI	GCGC	3 cut(s)	82, 175, 380
BstKTI	GATC	3 cut(s)	343, 417, 422
BstMAI	GTCTC	2 cut(s)	302, 365
BstMBI	GATC	3 cut(s)	340, 414, 419
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	193
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	468
CaiI	CAGNNNCTG	1 cut(s)	401
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	3 cut(s)	82, 175, 380
Csp6I	GTAC	3 cut(s)	89, 178, 203
CviAII	CATG	3 cut(s)	74, 344, 467
CviJI	RGCY	4 cut(s)	122, 158, 405, 460
CviKI_1	RGCY	4 cut(s)	122, 158, 405, 460
CviQI	GTAC	3 cut(s)	89, 178, 203
DinI	GGCGCC	1 cut(s)	379
DpnI	GATC	3 cut(s)	342, 416, 421
DpnII	GATC	3 cut(s)	340, 414, 419
EaeI	YGGCCR	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	462
Eco31I	GGTCTC	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	462
EgeI	GGCGCC	1 cut(s)	379
EheI	GGCGCC	1 cut(s)	379
FaeI	CATG	3 cut(s)	77, 347, 470
FaiI	YATR	6 cut(s)	75, 245, 345, 369, 413, 468
FatI	CATG	3 cut(s)	73, 343, 466
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	2 cut(s)	381, 471
FokI	GGATG	1 cut(s)	302
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	2 cut(s)	381, 471
GlaI	GCGC	3 cut(s)	81, 174, 379
GluI	GCNGC	2 cut(s)	381, 471
HaeII	RGCGCY	2 cut(s)	83, 381
HaeIII	GGCC	1 cut(s)	158
HhaI	GCGC	3 cut(s)	82, 175, 380
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	3 cut(s)	77, 347, 470
Hin6I	GCGC	3 cut(s)	80, 173, 378
HinP1I	GCGC	3 cut(s)	80, 173, 378
HinfI	GANTC	4 cut(s)	113, 310, 388, 451
HphI	GGTGA	3 cut(s)	43, 122, 440
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	292, 419
Hpy188III	TCNNGA	2 cut(s)	148, 344
Hpy8I	GTNNAC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	2 cut(s)	283, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpySE526I	ACGT	1 cut(s)	477
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	3 cut(s)	77, 347, 470
HspAI	GCGC	3 cut(s)	80, 173, 378
KasI	GGCGCC	1 cut(s)	377
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	3 cut(s)	340, 414, 419
LmnI	GCTCC	2 cut(s)	77, 410
LpnPI	CCDG	7 cut(s)	180, 195, 207, 284, 360, 369, 387
Lsp1109I	GCAGC	1 cut(s)	457
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	3 cut(s)	342, 416, 421
MboI	GATC	3 cut(s)	340, 414, 419
MboII	GAAGA	2 cut(s)	91, 225
MhlI	GDGCHC	1 cut(s)	462
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	4 cut(s)	183, 278, 293, 364
MluNI	TGGCCA	1 cut(s)	158
Mly113I	GGCGCC	1 cut(s)	378
MlyI	GAGTC	2 cut(s)	304, 460
MnlI	CCTC	6 cut(s)	152, 155, 382, 428, 432, 440
Mox20I	TGGCCA	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	217
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	2 cut(s)	26, 354
MslI	CAYNNNNRTG	1 cut(s)	19
Msp20I	TGGCCA	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	377
NarI	GGCGCC	1 cut(s)	378
NdeII	GATC	3 cut(s)	340, 414, 419
NlaIII	CATG	3 cut(s)	77, 347, 470
NlaIV	GGNNCC	2 cut(s)	379, 406
NmuCI	GTSAC	1 cut(s)	452
NspI	RCATGY	1 cut(s)	470
PaeI	GCATGC	1 cut(s)	470
PaeR7I	CTCGAG	1 cut(s)	461
PagI	TCATGA	1 cut(s)	343
PctI	GAATGC	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	113, 388
Pfl23II	CGTACG	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	382, 472
PleI	GAGTC	2 cut(s)	304, 459
PluTI	GGCGCC	1 cut(s)	381
PpsI	GAGTC	2 cut(s)	304, 459
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspLI	CGTACG	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	379, 406
PspXI	VCTCGAGB	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	401
RsaI	GTAC	3 cut(s)	90, 179, 204
RsaNI	GTAC	3 cut(s)	89, 178, 203
RseI	CAYNNNNRTG	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	26, 354
SatI	GCNGC	2 cut(s)	381, 471
Sau3AI	GATC	3 cut(s)	340, 414, 419
SchI	GAGTC	2 cut(s)	304, 460
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	4 cut(s)	94, 144, 361, 480
SfoI	GGCGCC	1 cut(s)	379
Sfr274I	CTCGAG	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
SphI	GCATGC	1 cut(s)	470
Sse9I	AATT	4 cut(s)	183, 278, 293, 364
SsiI	CCGC	1 cut(s)	381
SspDI	GGCGCC	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	2 cut(s)	391, 462
TasI	AATT	4 cut(s)	183, 278, 293, 364
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	2 cut(s)	113, 388
Tru1I	TTAA	2 cut(s)	26, 354
Tru9I	TTAA	2 cut(s)	26, 354
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	3 cut(s)	62, 91, 105
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	21
XapI	RAATTY	1 cut(s)	293
XceI	RCATGY	1 cut(s)	470
XhoI	CTCGAG	1 cut(s)	461
XmnI	GAANNNNTTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.