Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007491

Physical Location & Seq

Genomic Coordinates Forward (+)

86062740 .. 86064831

Gene Structure 2092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGACAAAAGATGCACTGAAATGGTTAATGGTGATTGCTGTTTTGGTGGTTTCAATATCACAATCATGTGTCCATGGAGCGCCACAAGTACCTTGCTTCTTCATTTTCGGTGATTCATTGGCCGATAACGGCAATAACAATCTCCTATTGACTTTGGCCAAAGTGAACTATGCGCCGTACGGAATTGATTATCCCGGTGGAGTAACAACGGGAAGATTTTCCAATGGCAAAACTACTGTTGATATACTAGGTCGTATTCCATCTCCATCTCTTTCTAAATTGCATTCGTCTGAATTTCTGGGTTTTGAGAATCCCATCCCACCATTTGCAACTACCAACATACAGGACATTGTTAAAGGTCTCAATTATGCATCTGGCGCCGCAGGGATTCGAGCAGAAACTGGCTCCAATTTGGGTGATCACATCAGCTTAGACCGGCAGTTACTGAATCACCAAATCACAATCTTGCGCATTGCTTCAATACTTCGAGCAAATACACTACAAACCTTGCAGTACTTGAACAAGTGCCTATACACAGTGGGAATGGGTAACAATGATTACATTAACAATTACTTCATGCCTCAGTTTTATCCCACCAGCAAGAGATACACCCCTGAACAATATGCTTCAGTTCTTATTGACCAATATACTAGCCAAATACTGACTTTGTACAACAAGTATGGAGCAAGGAAGGTTGCCTTGGTTGGACTGGGACTCATAGGTTGCACTCCTAATGCAATTTCGAAAACGAAGGGGATCACATGTGTAGATGAATTGAACAGTGCGGCCCAGCTTTTCAACCAAAAGCTTGTACCTCTTGTTGATCAGCTCAATACCAATTTGACTGATGCAAAATTCATCTATGTCAACAGTACTGGAATGAGTTCTGGGGATCCTACATCTGTTGGATTCAAGGTTTTGAATGTTGGGTGTTGTCCGGTGAATAGTGTTGGCCAATGTATTCGTTCCGGAACTCCATGCCAGAATAGGAGTGAGTATGTGTTCTGGGACTCATTCCACCCTACTGAGGCATCGAACCGAATTACTGCATTCAGAACATACGAAAGTGTTGACCCCACGGATAATTATCCTATGGATGTCAGTCACTTAGTTCAGCTTAAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

375

Amino Acids

41.04

Weight (kDa)

8.0

Isoelectric Point (pI)

30.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	34 - 350	7.4e-29	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007491)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710
malus_domestica	MD00G1093900.v1.1 MD10G1270800.v1.1 MD10G1270900.v1.1
prunus_persica	Prupe.4G070700_v2.0.a1 Prupe.4G070900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0012441 RchiOBHm_Chr5g0012451
rosa_laevigata	RLG00000031914 RLG00000031916
rosa_multiflora	Rmu_sc0003469.1_g000005
rosa_roxburghii	Rroxscaffold_1G00064210 Rroxscaffold_1G00064220 Rroxscaffold_1G00064230
rosa_rugosa	Rorug05G0001500
rosa_samantha	Rh5AG095700 Rh5BG091900 Rh5BG092000 Rh5CG104700 Rh5DG091300
rosa_wichuraiana	Rw5G008370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	470
AccB1I	GGYRCC	1 cut(s)	377
AccIII	TCCGGA	1 cut(s)	968
AciI	CCGC	2 cut(s)	381, 785
AclWI	GGATC	3 cut(s)	764, 887, 900
AcoI	YGGCCR	3 cut(s)	120, 156, 952
AcsI	RAATTY	2 cut(s)	293, 854
AcuI	CTGAAG	1 cut(s)	612
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	6 cut(s)	90, 179, 515, 671, 813, 874
AfiI	CCNNNNNNNGG	1 cut(s)	1027
AflIII	ACRYGT	1 cut(s)	761
AgsI	TTSAA	7 cut(s)	54, 480, 520, 778, 799, 913, 922
AjuI	GAANNNNNNNTTGG	2 cut(s)	683, 715
AluBI	AGCT	5 cut(s)	429, 793, 808, 829, 1117
AluI	AGCT	5 cut(s)	429, 793, 808, 829, 1117
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	3 cut(s)	764, 887, 900
AlwNI	CAGNNNCTG	2 cut(s)	401, 445
Aor13HI	TCCGGA	1 cut(s)	968
AoxI	GGCC	4 cut(s)	120, 156, 786, 952
ApoI	RAATTY	2 cut(s)	293, 854
Asp700I	GAANNNNTTC	2 cut(s)	217, 883
AspLEI	GCGC	4 cut(s)	82, 175, 380, 471
AspS9I	GGNCC	1 cut(s)	787
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	5 cut(s)	43, 122, 428, 443, 952
AsuII	TTCGAA	1 cut(s)	743
BalI	TGGCCA	2 cut(s)	158, 954
BamHI	GGATCC	1 cut(s)	892
BanI	GGYRCC	1 cut(s)	377
BccI	CCATC	3 cut(s)	268, 274, 323
BceAI	ACGGC	2 cut(s)	145, 160
BclI	TGATCA	2 cut(s)	418, 823
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	2 cut(s)	248, 651
BfoI	RGCGCY	2 cut(s)	83, 381
BisI	GCNGC	2 cut(s)	381, 786
BlsI	GCNGC	2 cut(s)	382, 787
BmcAI	AGTACT	2 cut(s)	515, 874
Bme1390I	CCNGG	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	787
BmiI	GGNNCC	3 cut(s)	379, 406, 894
BmrFI	CCNGG	1 cut(s)	195
BmrI	ACTGGG	1 cut(s)	719
BmsI	GCATC	3 cut(s)	380, 838, 1040
BmuI	ACTGGG	1 cut(s)	719
Bpu14I	TTCGAA	1 cut(s)	743
BpuMI	CCSGG	1 cut(s)	195
BsaBI	GATNNNNATC	1 cut(s)	1086
BsaHI	GRCGYC	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	3 cut(s)	73, 699, 1077
BsaWI	WCCGGW	2 cut(s)	937, 968
Bsc4I	CCNNNNNNNGG	1 cut(s)	1027
Bse118I	RCCGGY	1 cut(s)	435
Bse1I	ACTGG	3 cut(s)	406, 714, 880
Bse3DI	GCAATG	1 cut(s)	471
Bse8I	GATNNNNATC	1 cut(s)	1086
BseAI	TCCGGA	1 cut(s)	968
BseDI	CCNNGG	3 cut(s)	73, 699, 1077
BseGI	GGATG	2 cut(s)	315, 1102
BseJI	GATNNNNATC	1 cut(s)	1086
BseLI	CCNNNNNNNGG	1 cut(s)	1027
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	2 cut(s)	596, 1017
BseNI	ACTGG	3 cut(s)	406, 714, 880
BseYI	CCCAGC	1 cut(s)	789
BshFI	GGCC	4 cut(s)	122, 158, 788, 954
BshNI	GGYRCC	1 cut(s)	377
BsiSI	CCGG	4 cut(s)	195, 436, 938, 969
BsiWI	CGTACG	1 cut(s)	177
BslFI	GGGAC	2 cut(s)	726, 1022
BslI	CCNNNNNNNGG	1 cut(s)	1027
BsmAI	GTCTC	1 cut(s)	365
BsmFI	GGGAC	2 cut(s)	726, 1022
BsmI	GAATGC	2 cut(s)	283, 1049
BsnI	GGCC	4 cut(s)	122, 158, 788, 954
Bso31I	GGTCTC	1 cut(s)	365
Bsp119I	TTCGAA	1 cut(s)	743
Bsp13I	TCCGGA	1 cut(s)	968
Bsp1407I	TGTACA	1 cut(s)	669
Bsp143I	GATC	4 cut(s)	418, 756, 823, 892
Bsp19I	CCATGG	1 cut(s)	73
BspACI	CCGC	2 cut(s)	381, 785
BspANI	GGCC	4 cut(s)	122, 158, 788, 954
BspCNI	CTCAG	2 cut(s)	595, 1018
BspEI	TCCGGA	1 cut(s)	968
BspLI	GGNNCC	3 cut(s)	379, 406, 894
BspPI	GGATC	3 cut(s)	764, 887, 900
BspT104I	TTCGAA	1 cut(s)	743
BspT107I	GGYRCC	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	471
BsrFI	RCCGGY	1 cut(s)	435
BsrGI	TGTACA	1 cut(s)	669
BsrI	ACTGG	3 cut(s)	406, 714, 880
BssAI	RCCGGY	1 cut(s)	435
BssECI	CCNNGG	3 cut(s)	73, 699, 1077
BssMI	GATC	4 cut(s)	418, 756, 823, 892
BssNI	GRCGYC	1 cut(s)	378
BssT1I	CCWWGG	2 cut(s)	73, 699
Bst4CI	ACNGT	4 cut(s)	238, 538, 782, 872
BstACI	GRCGYC	1 cut(s)	378
BstAUI	TGTACA	1 cut(s)	669
BstBI	TTCGAA	1 cut(s)	743
BstDEI	CTNAG	4 cut(s)	430, 582, 1026, 1108
BstDSI	CCRYGG	2 cut(s)	73, 1077
BstF5I	GGATG	2 cut(s)	315, 1102
BstH2I	RGCGCY	2 cut(s)	83, 381
BstHHI	GCGC	4 cut(s)	82, 175, 380, 471
BstKTI	GATC	4 cut(s)	421, 759, 826, 895
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	4 cut(s)	418, 756, 823, 892
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	765
BstSCI	CCNGG	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	892
BstYI	RGATCY	1 cut(s)	892
BsuRI	GGCC	4 cut(s)	122, 158, 788, 954
BtgI	CCRYGG	2 cut(s)	73, 1077
BtsCI	GGATG	2 cut(s)	315, 1102
BtsIMutI	CAGTG	3 cut(s)	14, 543, 787
CaiI	CAGNNNCTG	2 cut(s)	401, 445
CfoI	GCGC	4 cut(s)	82, 175, 380, 471
Cfr10I	RCCGGY	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	787
Csp6I	GTAC	6 cut(s)	89, 178, 514, 670, 812, 873
CviAII	CATG	5 cut(s)	66, 74, 577, 762, 978
CviQI	GTAC	6 cut(s)	89, 178, 514, 670, 812, 873
DdeI	CTNAG	4 cut(s)	430, 582, 1026, 1108
DinI	GGCGCC	1 cut(s)	379
DpnI	GATC	4 cut(s)	420, 758, 825, 894
DpnII	GATC	4 cut(s)	418, 756, 823, 892
EaeI	YGGCCR	3 cut(s)	120, 156, 952
Eco130I	CCWWGG	2 cut(s)	73, 699
Eco31I	GGTCTC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	612
EcoT14I	CCWWGG	2 cut(s)	73, 699
EcoT22I	ATGCAT	1 cut(s)	373
EgeI	GGCGCC	1 cut(s)	379
EheI	GGCGCC	1 cut(s)	379
ErhI	CCWWGG	2 cut(s)	73, 699
FaeI	CATG	5 cut(s)	69, 77, 580, 765, 981
FalI	AAGNNNNNCTT	2 cut(s)	683, 715
FaqI	GGGAC	2 cut(s)	726, 1022
FatI	CATG	5 cut(s)	65, 73, 576, 761, 977
FbaI	TGATCA	2 cut(s)	418, 823
Fnu4HI	GCNGC	2 cut(s)	381, 786
FokI	GGATG	2 cut(s)	302, 1109
Fsp4HI	GCNGC	2 cut(s)	381, 786
FspBI	CTAG	2 cut(s)	248, 651
FspI	TGCGCA	1 cut(s)	470
GlaI	GCGC	4 cut(s)	81, 174, 379, 470
GluI	GCNGC	2 cut(s)	381, 786
GsaI	CCCAGC	1 cut(s)	793
HaeII	RGCGCY	2 cut(s)	83, 381
HaeIII	GGCC	4 cut(s)	122, 158, 788, 954
HapII	CCGG	4 cut(s)	195, 436, 938, 969
HhaI	GCGC	4 cut(s)	82, 175, 380, 471
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	5 cut(s)	69, 77, 580, 765, 981
Hin6I	GCGC	4 cut(s)	80, 173, 378, 469
HinP1I	GCGC	4 cut(s)	80, 173, 378, 469
HincII	GTYRAC	2 cut(s)	868, 1072
HindII	GTYRAC	2 cut(s)	868, 1072
HindIII	AAGCTT	1 cut(s)	806
HinfI	GANTC	7 cut(s)	113, 310, 388, 448, 714, 909, 1010
HpaII	CCGG	4 cut(s)	195, 436, 938, 969
HphI	GGTGA	5 cut(s)	43, 122, 428, 443, 952
Hpy166II	GTNNAC	3 cut(s)	166, 868, 1072
Hpy188I	TCNGA	2 cut(s)	292, 1055
Hpy188III	TCNNGA	1 cut(s)	969
Hpy8I	GTNNAC	3 cut(s)	166, 868, 1072
HpyAV	CCTTC	2 cut(s)	685, 745
HpyCH4III	ACNGT	4 cut(s)	238, 538, 782, 872
HpyCH4V	TGCA	9 cut(s)	14, 283, 329, 371, 511, 726, 737, 851, 1049
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	4 cut(s)	430, 582, 1026, 1108
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	5 cut(s)	69, 77, 580, 765, 981
HspAI	GCGC	4 cut(s)	80, 173, 378, 469
KasI	GGCGCC	1 cut(s)	377
Kpn2I	TCCGGA	1 cut(s)	968
Ksp22I	TGATCA	2 cut(s)	418, 823
Kzo9I	GATC	4 cut(s)	418, 756, 823, 892
LmnI	GCTCC	3 cut(s)	77, 410, 683
LweI	GCATC	3 cut(s)	380, 838, 1040
MaeI	CTAG	2 cut(s)	248, 651
MaeIII	GTNAC	4 cut(s)	202, 441, 548, 1103
MalI	GATC	4 cut(s)	420, 758, 825, 894
MboI	GATC	4 cut(s)	418, 756, 823, 892
MboII	GAAGA	2 cut(s)	91, 225
MflI	RGATCY	1 cut(s)	892
MlsI	TGGCCA	2 cut(s)	158, 954
MluNI	TGGCCA	2 cut(s)	158, 954
Mly113I	GGCGCC	1 cut(s)	378
MlyI	GAGTC	2 cut(s)	708, 1004
MmeI	TCCRAC	2 cut(s)	685, 886
MnlI	CCTC	3 cut(s)	591, 825, 1021
Mox20I	TGGCCA	2 cut(s)	158, 954
Mph1103I	ATGCAT	1 cut(s)	373
MroI	TCCGGA	1 cut(s)	968
MroXI	GAANNNNTTC	2 cut(s)	217, 883
MscI	TGGCCA	2 cut(s)	158, 954
MseI	TTAA	4 cut(s)	26, 354, 564, 1119
MslI	CAYNNNNRTG	2 cut(s)	19, 64
Msp20I	TGGCCA	2 cut(s)	158, 954
MspI	CCGG	4 cut(s)	195, 436, 938, 969
MspR9I	CCNGG	1 cut(s)	195
Mva1269I	GAATGC	2 cut(s)	283, 1049
MwoI	GCNNNNNNNGC	1 cut(s)	377
NarI	GGCGCC	1 cut(s)	378
NciI	CCSGG	1 cut(s)	195
NcoI	CCATGG	1 cut(s)	73
NdeII	GATC	4 cut(s)	418, 756, 823, 892
NlaIII	CATG	5 cut(s)	69, 77, 580, 765, 981
NlaIV	GGNNCC	3 cut(s)	379, 406, 894
NmuCI	GTSAC	1 cut(s)	1103
NsbI	TGCGCA	1 cut(s)	470
NsiI	ATGCAT	1 cut(s)	373
NspI	RCATGY	1 cut(s)	765
NspV	TTCGAA	1 cut(s)	743
PciI	ACATGT	1 cut(s)	761
PctI	GAATGC	2 cut(s)	283, 1049
PdmI	GAANNNNTTC	2 cut(s)	217, 883
PfeI	GAWTC	5 cut(s)	113, 310, 388, 448, 909
Pfl23II	CGTACG	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	382, 787
PleI	GAGTC	2 cut(s)	708, 1004
PluTI	GGCGCC	1 cut(s)	381
PpsI	GAGTC	2 cut(s)	708, 1004
PscI	ACATGT	1 cut(s)	761
PspFI	CCCAGC	1 cut(s)	789
PspLI	CGTACG	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	379, 406, 894
PspPI	GGNCC	1 cut(s)	787
PstNI	CAGNNNCTG	2 cut(s)	401, 445
PsuI	RGATCY	1 cut(s)	892
RsaI	GTAC	6 cut(s)	90, 179, 515, 671, 813, 874
RsaNI	GTAC	6 cut(s)	89, 178, 514, 670, 812, 873
RseI	CAYNNNNRTG	2 cut(s)	19, 64
SaqAI	TTAA	4 cut(s)	26, 354, 564, 1119
SatI	GCNGC	2 cut(s)	381, 786
Sau3AI	GATC	4 cut(s)	418, 756, 823, 892
Sau96I	GGNCC	1 cut(s)	787
ScaI	AGTACT	2 cut(s)	515, 874
SchI	GAGTC	2 cut(s)	708, 1004
ScrFI	CCNGG	1 cut(s)	195
SfaNI	GCATC	3 cut(s)	380, 838, 1040
SfoI	GGCGCC	1 cut(s)	379
SfuI	TTCGAA	1 cut(s)	743
SmiMI	CAYNNNNRTG	2 cut(s)	19, 64
SsiI	CCGC	2 cut(s)	381, 785
SspDI	GGCGCC	1 cut(s)	377
SspMI	CTAG	2 cut(s)	248, 651
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	2 cut(s)	73, 699
TaaI	ACNGT	4 cut(s)	238, 538, 782, 872
TaqI	TCGA	4 cut(s)	391, 487, 743, 1034
TatI	WGTACW	3 cut(s)	513, 669, 872
TauI	GCSGC	2 cut(s)	383, 788
TfiI	GAWTC	5 cut(s)	113, 310, 388, 448, 909
Tru1I	TTAA	4 cut(s)	26, 354, 564, 1119
Tru9I	TTAA	4 cut(s)	26, 354, 564, 1119
TscAI	CASTG	3 cut(s)	21, 543, 787
TseFI	GTSAC	1 cut(s)	1103
Tsp45I	GTSAC	1 cut(s)	1103
TspDTI	ATGAA	5 cut(s)	91, 105, 565, 786, 847
TspGWI	ACGGA	2 cut(s)	195, 1094
TspRI	CASTG	3 cut(s)	21, 543, 787
XapI	RAATTY	2 cut(s)	293, 854
XceI	RCATGY	1 cut(s)	765
XmnI	GAANNNNTTC	2 cut(s)	217, 883
XspI	CTAG	2 cut(s)	248, 651
ZrmI	AGTACT	2 cut(s)	515, 874
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.