Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007491

Physical Location & Seq

Genomic Coordinates Reverse (-)

3476351 .. 3478057

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G070900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGCAAAAGAGATAACGTTAGGGTTCATCCTGATTGTTGTTTTGGTGGTTTCAATTTCACAATCTCGTCTTGTTAATGGAGCTCCACAAGTACCTTGTTTTTTCATTTTTGGTGATTCATTGGCTGATAATGGCAATAATAACAACCTCCTGAGCTTTGCTAACGCCAACTACCAACCTTACGGGATTGATTTTCCAATTGGACCGACGGGAAGATTTTGCAATGGCCGGACCACCGTTGACATACTAGCTCAACTGTTGGGTTTTGAGAACCCCATCCCATCATTTGCAGCTACTAGAGGCCAAGACATTTTAAAAGGTCTGAACTACGCATCAGGCTCAGCAGGAATTCGAGCAGAAACTGGCTTCCAAGTGGGTGCTCGTATCAGCTTAGATCAGCAGCTACAAAATCACCAAGTTACAGTCTCACGCATTGCTTCCACACTTGGACATAACCAATCGGCTTTGCAGTATTTAAACAAATGCTTATATTCAGTGGGAATGGGCAGCAATGACTACATAAACAACTATTTCCTGCCTCAATTTTATGACACCAGTCGCATATATAATCATGAACAATACGCTACAGTTCTTATTCATCAATATTCTCGTCAAATAGCGAGCTTGTACAAGAATGGAGCGAGGAAGGTGGCCTTGATTGGATTGGGAGCAATTGGCTGCACCCCAAATGCAATCTCAACATTTGGCACAGAAGGGTCCGCATGTGTGGACAATATGAACAGTGCGGTCCAACTTTTTAACCAAAAGCTTTTAGCTCTAGTCAATCAGCTAAACACCAATCTGACCGATGCAAAATTCATCTATGTCAACAGCTTTGGAATGGCTTCAGGGGACCCAGCAGCTGCGGGTTTCAAGGTTGTGAATGTTGGGTGCTGCCCAGTGAATAAATTTGGTCAATGTGCTGCTGACCAAACTCCATGCCAGAATAGGAGTGAGTATGCGTTCTGGGACGGATTTCATCCTACTGAGGCTTTGAATCAAATCACTGCAAGAAGAACATACACCGAGTTTGATCCGTCCGACACTTATCCGTTGGATATCAGTCACCTTGTTCAGCTTAGTCTATCATCATGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

367

Amino Acids

39.79

Weight (kDa)

6.29

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007491)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710
malus_domestica	MD00G1093900.v1.1 MD10G1270800.v1.1 MD10G1270900.v1.1
prunus_persica	Prupe.4G070700_v2.0.a1 Prupe.4G070900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0012441 RchiOBHm_Chr5g0012451
rosa_laevigata	RLG00000031914 RLG00000031916
rosa_multiflora	Rmu_sc0003469.1_g000005
rosa_roxburghii	Rroxscaffold_1G00064210 Rroxscaffold_1G00064220 Rroxscaffold_1G00064230
rosa_rugosa	Rorug05G0001500
rosa_samantha	Rh5AG095700 Rh5BG091900 Rh5BG092000 Rh5CG104700 Rh5DG091300
rosa_wichuraiana	Rw5G008370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	720, 746, 866
AclI	AACGTT	1 cut(s)	17
AclWI	GGATC	1 cut(s)	1028
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	3 cut(s)	348, 815, 908
AcuI	CTGAAG	1 cut(s)	831
AfaI	GTAC	2 cut(s)	93, 629
AgsI	TTSAA	3 cut(s)	54, 874, 997
Alw21I	GWGCWC	2 cut(s)	85, 382
Alw26I	GTCTC	1 cut(s)	430
AlwI	GGATC	1 cut(s)	1028
AlwNI	CAGNNNCTG	2 cut(s)	362, 863
AoxI	GGCC	3 cut(s)	226, 301, 651
ApeKI	GCWGC	8 cut(s)	290, 400, 507, 678, 860, 863, 894, 923
ApoI	RAATTY	3 cut(s)	348, 815, 908
Asp700I	GAANNNNTTC	1 cut(s)	844
AspS9I	GGNCC	5 cut(s)	203, 231, 717, 748, 853
AsuHPI	GGTGA	3 cut(s)	125, 404, 1058
AvaII	GGWCC	5 cut(s)	203, 231, 717, 748, 853
BanII	GRGCYC	1 cut(s)	85
Bbv12I	GWGCWC	2 cut(s)	85, 382
BbvI	GCAGC	8 cut(s)	302, 412, 519, 665, 850, 872, 881, 910
BccI	CCATC	2 cut(s)	284, 289
BcoDI	GTCTC	1 cut(s)	430
BfaI	CTAG	3 cut(s)	248, 297, 779
BfmI	CTRYAG	1 cut(s)	585
BisI	GCNGC	8 cut(s)	291, 401, 508, 679, 861, 864, 895, 924
BlpI	GCTNAGC	1 cut(s)	340
BlsI	GCNGC	8 cut(s)	292, 402, 509, 680, 862, 865, 896, 925
Bme18I	GGWCC	5 cut(s)	203, 231, 717, 748, 853
BmgT120I	GGNCC	5 cut(s)	203, 231, 717, 748, 853
BmiI	GGNNCC	3 cut(s)	718, 854, 855
BmrI	ACTGGG	1 cut(s)	893
BmsI	GCATC	2 cut(s)	341, 799
BmuI	ACTGGG	1 cut(s)	893
BoxI	GACNNNNGTC	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	152
Bpu1102I	GCTNAGC	1 cut(s)	340
Bse1I	ACTGG	3 cut(s)	367, 555, 899
Bse3DI	GCAATG	3 cut(s)	229, 432, 517
BseGI	GGATG	3 cut(s)	27, 276, 979
BseMI	GCAATG	3 cut(s)	229, 432, 517
BseMII	CTCAG	3 cut(s)	143, 354, 978
BseNI	ACTGG	3 cut(s)	367, 555, 899
BseXI	GCAGC	8 cut(s)	302, 412, 519, 665, 850, 872, 881, 910
BseYI	CCCAGC	1 cut(s)	856
BsgI	GTGCAG	1 cut(s)	664
BshFI	GGCC	3 cut(s)	228, 303, 653
BsiHKAI	GWGCWC	2 cut(s)	85, 382
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	2 cut(s)	866, 983
BsmAI	GTCTC	1 cut(s)	430
BsmFI	GGGAC	2 cut(s)	866, 983
BsnI	GGCC	3 cut(s)	228, 303, 653
Bsp1286I	GDGCHC	2 cut(s)	85, 382
Bsp1407I	TGTACA	1 cut(s)	627
Bsp143I	GATC	2 cut(s)	394, 1033
Bsp1720I	GCTNAGC	1 cut(s)	340
BspACI	CCGC	3 cut(s)	720, 746, 866
BspANI	GGCC	3 cut(s)	228, 303, 653
BspCNI	CTCAG	3 cut(s)	144, 353, 979
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	3 cut(s)	718, 854, 855
BspPI	GGATC	1 cut(s)	1028
BsrDI	GCAATG	3 cut(s)	229, 432, 517
BsrGI	TGTACA	1 cut(s)	627
BsrI	ACTGG	3 cut(s)	367, 555, 899
BssMI	GATC	2 cut(s)	394, 1033
Bst4CI	ACNGT	5 cut(s)	238, 258, 424, 589, 743
BstAUI	TGTACA	1 cut(s)	627
BstC8I	GCNNGC	1 cut(s)	622
BstDEI	CTNAG	5 cut(s)	152, 340, 391, 987, 1079
BstF5I	GGATG	3 cut(s)	27, 276, 979
BstKTI	GATC	2 cut(s)	397, 1036
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	2 cut(s)	394, 1033
BstNSI	RCATGY	2 cut(s)	726, 1099
BstPAI	GACNNNNGTC	1 cut(s)	555
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	8 cut(s)	302, 412, 519, 665, 850, 872, 881, 910
BsuRI	GGCC	3 cut(s)	228, 303, 653
BtsCI	GGATG	3 cut(s)	27, 276, 979
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	4 cut(s)	501, 748, 906, 1005
Cac8I	GCNNGC	1 cut(s)	622
CaiI	CAGNNNCTG	2 cut(s)	362, 863
CciI	TCATGA	1 cut(s)	571
Cfr13I	GGNCC	5 cut(s)	203, 231, 717, 748, 853
Csp6I	GTAC	2 cut(s)	92, 628
CviAII	CATG	5 cut(s)	572, 723, 939, 1092, 1096
CviQI	GTAC	2 cut(s)	92, 628
DdeI	CTNAG	5 cut(s)	152, 340, 391, 987, 1079
DpnI	GATC	2 cut(s)	396, 1035
DpnII	GATC	2 cut(s)	394, 1033
DraI	TTTAAA	2 cut(s)	315, 477
EaeI	YGGCCR	1 cut(s)	226
Ecl136II	GAGCTC	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	1060
Eco47I	GGWCC	5 cut(s)	203, 231, 717, 748, 853
Eco53kI	GAGCTC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	831
EcoICRI	GAGCTC	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	853
EcoRI	GAATTC	1 cut(s)	348
EcoRV	GATATC	1 cut(s)	1060
EcoT22I	ATGCAT	1 cut(s)	1097
EcoT38I	GRGCYC	1 cut(s)	85
FaeI	CATG	5 cut(s)	575, 726, 942, 1095, 1099
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FaqI	GGGAC	2 cut(s)	866, 983
FatI	CATG	5 cut(s)	571, 722, 938, 1091, 1095
FauI	CCCGC	1 cut(s)	859
Fnu4HI	GCNGC	8 cut(s)	291, 401, 508, 679, 861, 864, 895, 924
FokI	GGATG	3 cut(s)	14, 263, 966
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	8 cut(s)	291, 401, 508, 679, 861, 864, 895, 924
FspBI	CTAG	3 cut(s)	248, 297, 779
GluI	GCNGC	8 cut(s)	291, 401, 508, 679, 861, 864, 895, 924
GsaI	CCCAGC	1 cut(s)	860
HaeIII	GGCC	3 cut(s)	228, 303, 653
HapII	CCGG	1 cut(s)	229
Hin1II	CATG	5 cut(s)	575, 726, 942, 1095, 1099
HincII	GTYRAC	2 cut(s)	241, 829
HindII	GTYRAC	2 cut(s)	241, 829
HindIII	AAGCTT	1 cut(s)	767
HinfI	GANTC	2 cut(s)	116, 997
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	3 cut(s)	125, 404, 1058
Hpy166II	GTNNAC	3 cut(s)	241, 730, 829
Hpy188I	TCNGA	3 cut(s)	324, 804, 1042
Hpy188III	TCNNGA	3 cut(s)	31, 151, 572
Hpy8I	GTNNAC	3 cut(s)	241, 730, 829
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	640, 707
HpyCH4III	ACNGT	5 cut(s)	238, 258, 424, 589, 743
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	8 cut(s)	222, 290, 469, 681, 692, 812, 1010, 1095
HpyF3I	CTNAG	5 cut(s)	152, 340, 391, 987, 1079
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	5 cut(s)	575, 726, 942, 1095, 1099
KflI	GGGWCCC	1 cut(s)	853
Kzo9I	GATC	2 cut(s)	394, 1033
LmnI	GCTCC	4 cut(s)	80, 88, 638, 668
Lsp1109I	GCAGC	8 cut(s)	302, 412, 519, 665, 850, 872, 881, 910
LweI	GCATC	2 cut(s)	341, 799
MaeI	CTAG	3 cut(s)	248, 297, 779
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	418, 1064
MalI	GATC	2 cut(s)	396, 1035
MboI	GATC	2 cut(s)	394, 1033
MboII	GAAGA	2 cut(s)	225, 1026
MfeI	CAATTG	2 cut(s)	198, 672
MhlI	GDGCHC	2 cut(s)	85, 382
MluCI	AATT	7 cut(s)	54, 198, 348, 542, 672, 815, 908
MmeI	TCCRAC	3 cut(s)	775, 1035, 1065
MnlI	CCTC	5 cut(s)	158, 293, 549, 636, 982
Mph1103I	ATGCAT	1 cut(s)	1097
MroXI	GAANNNNTTC	1 cut(s)	844
MseI	TTAA	4 cut(s)	75, 314, 476, 759
MspA1I	CMGCKG	1 cut(s)	863
MspI	CCGG	1 cut(s)	229
MunI	CAATTG	2 cut(s)	198, 672
NdeII	GATC	2 cut(s)	394, 1033
NlaIII	CATG	5 cut(s)	575, 726, 942, 1095, 1099
NlaIV	GGNNCC	3 cut(s)	718, 854, 855
NmuCI	GTSAC	1 cut(s)	1064
NsiI	ATGCAT	1 cut(s)	1097
NspI	RCATGY	2 cut(s)	726, 1099
PagI	TCATGA	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	844
PfeI	GAWTC	2 cut(s)	116, 997
PkrI	GCNGC	8 cut(s)	292, 402, 509, 680, 862, 865, 896, 925
PpuMI	RGGWCCY	1 cut(s)	853
PshAI	GACNNNNGTC	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	85
Psp1406I	AACGTT	1 cut(s)	17
Psp5II	RGGWCCY	1 cut(s)	853
PspFI	CCCAGC	1 cut(s)	856
PspN4I	GGNNCC	3 cut(s)	718, 854, 855
PspPI	GGNCC	5 cut(s)	203, 231, 717, 748, 853
PspPPI	RGGWCCY	1 cut(s)	853
PstNI	CAGNNNCTG	2 cut(s)	362, 863
PvuII	CAGCTG	1 cut(s)	863
RsaI	GTAC	2 cut(s)	93, 629
RsaNI	GTAC	2 cut(s)	92, 628
SacI	GAGCTC	1 cut(s)	85
SaqAI	TTAA	4 cut(s)	75, 314, 476, 759
SatI	GCNGC	8 cut(s)	291, 401, 508, 679, 861, 864, 895, 924
Sau3AI	GATC	2 cut(s)	394, 1033
Sau96I	GGNCC	5 cut(s)	203, 231, 717, 748, 853
SduI	GDGCHC	2 cut(s)	85, 382
SfaNI	GCATC	2 cut(s)	341, 799
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	5 cut(s)	203, 231, 717, 748, 853
Sse9I	AATT	7 cut(s)	54, 198, 348, 542, 672, 815, 908
SsiI	CCGC	3 cut(s)	720, 746, 866
SspI	AATATT	1 cut(s)	605
SspMI	CTAG	3 cut(s)	248, 297, 779
SstI	GAGCTC	1 cut(s)	85
TaaI	ACNGT	5 cut(s)	238, 258, 424, 589, 743
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	352
TaqII	GACCGA	2 cut(s)	220, 821
TasI	AATT	7 cut(s)	54, 198, 348, 542, 672, 815, 908
TatI	WGTACW	1 cut(s)	627
TfiI	GAWTC	2 cut(s)	116, 997
Tru1I	TTAA	4 cut(s)	75, 314, 476, 759
Tru9I	TTAA	4 cut(s)	75, 314, 476, 759
TscAI	CASTG	4 cut(s)	501, 748, 906, 1012
TseFI	GTSAC	1 cut(s)	1064
TseI	GCWGC	8 cut(s)	290, 400, 507, 678, 860, 863, 894, 923
Tsp45I	GTSAC	1 cut(s)	1064
TspDTI	ATGAA	8 cut(s)	16, 94, 108, 587, 588, 752, 808, 968
TspGWI	ACGGA	3 cut(s)	987, 1026, 1041
TspRI	CASTG	4 cut(s)	501, 748, 906, 1012
VpaK11BI	GGWCC	5 cut(s)	203, 231, 717, 748, 853
XapI	RAATTY	3 cut(s)	348, 815, 908
XceI	RCATGY	2 cut(s)	726, 1099
XmnI	GAANNNNTTC	1 cut(s)	844
XspI	CTAG	3 cut(s)	248, 297, 779
Zsp2I	ATGCAT	1 cut(s)	1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.