Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007491

Physical Location & Seq

Genomic Coordinates Forward (+)

19647897 .. 19649350

Gene Structure 1454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1093900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGTTAGAGGTCTGAATTATGCATCTGCCTCAGCAGGAGTTCGAGATGAAACTGGCTCCCATATGGGTGAGAATGTCAATTTAAATAAGCAATTACTGAATCACAAATCCACAGTCAAGCGCATTACTTCAATAATGGGACTTAAACGATTGTCTAGGCAGCATTTACAAAAGTGCTTATATTCAGTTGGACTGGGTAGCAACGATTACCTTATGAATTACTTCCAGCCCAAGTTTTATCCCACCAGCAAGCGATACACTCCTGAACAATATGCTTCAGTTCTTATTAAACAATATTCTAAGCAAATGAAGACTCTGTACAAGTATGGAGCCAGGAAGGTGGTCTTGAATGGAGTAGGACAAGTAGGCTGCACTCCATCTTCAATTTCGATTACACATGGGTCTACATGCGCAGAAAATATGAACAATGCTGTTCAATTTTTTAACCAAAAGCTTAAGTCTCTCGTCGATCAGCTCAACACCAAACTGACTGATGCAAAATTCATCTATGTTGACATGTTTGGAATTTCCGGAAGTCCATCAGAGGTTACAGCTGCAGGAATCAAGGTGACGAAAGCTAACTGTTGTCCAGTAGATGAATTTGGCCAATGTGTTCGTTCCAAAGGTACATGCCAGAACAGAAGTGAGTATGCGTTCTGGGATTTATTTCATCCTACTGAAGCTTCCAATCTCATCATTGCAAGAAAGTCATACAATTCTTCTAACTCGTCGGACACTTATCCAGCGAATGTTCGTCACCTAGTTCAGCTCAGGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

260

Amino Acids

28.92

Weight (kDa)

9.58

Isoelectric Point (pI)

30.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	4 - 235	5.8e-23	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007491)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710
malus_domestica	MD00G1093900.v1.1 MD10G1270800.v1.1 MD10G1270900.v1.1
prunus_persica	Prupe.4G070700_v2.0.a1 Prupe.4G070900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0012441 RchiOBHm_Chr5g0012451
rosa_laevigata	RLG00000031914 RLG00000031916
rosa_multiflora	Rmu_sc0003469.1_g000005
rosa_roxburghii	Rroxscaffold_1G00064210 Rroxscaffold_1G00064220 Rroxscaffold_1G00064230
rosa_rugosa	Rorug05G0001500
rosa_samantha	Rh5AG095700 Rh5BG091900 Rh5BG092000 Rh5CG104700 Rh5DG091300
rosa_wichuraiana	Rw5G008370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	404
AccIII	TCCGGA	1 cut(s)	530
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	3 cut(s)	500, 525, 599
AcuI	CTGAAG	2 cut(s)	261, 699
AfaI	GTAC	2 cut(s)	320, 628
AflII	CTTAAG	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	516
AgsI	TTSAA	4 cut(s)	132, 349, 384, 437
AjnI	CCWGG	1 cut(s)	332
AluBI	AGCT	6 cut(s)	454, 475, 554, 578, 683, 769
AluI	AGCT	6 cut(s)	454, 475, 554, 578, 683, 769
Alw26I	GTCTC	1 cut(s)	465
Aor13HI	TCCGGA	1 cut(s)	530
AoxI	GGCC	1 cut(s)	604
ApeKI	GCWGC	3 cut(s)	160, 369, 554
ApoI	RAATTY	3 cut(s)	500, 525, 599
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
Asp700I	GAANNNNTTC	1 cut(s)	221
AspLEI	GCGC	2 cut(s)	123, 413
AsuHPI	GGTGA	3 cut(s)	80, 580, 749
BalI	TGGCCA	1 cut(s)	606
BarI	GAAGNNNNNNTAC	2 cut(s)	302, 334
BbsI	GAAGAC	1 cut(s)	317
BbvCI	CCTCAGC	1 cut(s)	31
BbvI	GCAGC	3 cut(s)	172, 356, 541
BccI	CCATC	2 cut(s)	385, 547
BciT130I	CCWGG	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	465
BfaI	CTAG	2 cut(s)	156, 761
BfmI	CTRYAG	1 cut(s)	555
BfrI	CTTAAG	1 cut(s)	455
BisI	GCNGC	3 cut(s)	161, 370, 555
BlsI	GCNGC	3 cut(s)	162, 371, 556
Bme1390I	CCNGG	1 cut(s)	334
BmiI	GGNNCC	2 cut(s)	58, 331
BmrFI	CCNGG	1 cut(s)	334
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	2 cut(s)	32, 484
BmuI	ACTGGG	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	317
Bpu10I	CCTNAGC	2 cut(s)	31, 770
BsaWI	WCCGGW	1 cut(s)	530
Bse1I	ACTGG	3 cut(s)	58, 198, 590
Bse3DI	GCAATG	1 cut(s)	696
BseAI	TCCGGA	1 cut(s)	530
BseBI	CCWGG	1 cut(s)	334
BseGI	GGATG	1 cut(s)	670
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	3 cut(s)	58, 198, 590
BseXI	GCAGC	3 cut(s)	172, 356, 541
BsgI	GTGCAG	1 cut(s)	355
BshFI	GGCC	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	531
BslFI	GGGAC	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	465
BsmFI	GGGAC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	606
Bsp13I	TCCGGA	1 cut(s)	530
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	469
BspANI	GGCC	1 cut(s)	606
BspCNI	CTCAG	1 cut(s)	44
BspEI	TCCGGA	1 cut(s)	530
BspLI	GGNNCC	2 cut(s)	58, 331
BspMAI	CTGCAG	1 cut(s)	559
BspTI	CTTAAG	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	696
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	3 cut(s)	58, 198, 590
BssMI	GATC	1 cut(s)	469
Bst2UI	CCWGG	1 cut(s)	334
Bst4CI	ACNGT	2 cut(s)	115, 584
BstAFI	CTTAAG	1 cut(s)	455
BstAUI	TGTACA	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	3 cut(s)	31, 300, 770
BstF5I	GGATG	1 cut(s)	670
BstHHI	GCGC	2 cut(s)	123, 413
BstKTI	GATC	1 cut(s)	472
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	1 cut(s)	469
BstNI	CCWGG	1 cut(s)	334
BstNSI	RCATGY	3 cut(s)	411, 520, 633
BstSCI	CCNGG	1 cut(s)	332
BstSFI	CTRYAG	1 cut(s)	555
BstV1I	GCAGC	3 cut(s)	172, 356, 541
BstV2I	GAAGAC	1 cut(s)	317
BstXI	CCANNNNNNTGG	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	606
BtsCI	GGATG	1 cut(s)	670
Cac8I	GCNNGC	1 cut(s)	251
CfoI	GCGC	2 cut(s)	123, 413
Csp6I	GTAC	2 cut(s)	319, 627
CviAII	CATG	4 cut(s)	398, 408, 517, 630
CviQI	GTAC	2 cut(s)	319, 627
DdeI	CTNAG	3 cut(s)	31, 300, 770
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
DraI	TTTAAA	1 cut(s)	84
EaeI	YGGCCR	1 cut(s)	604
Eco57I	CTGAAG	2 cut(s)	261, 699
EcoRII	CCWGG	1 cut(s)	332
EcoT22I	ATGCAT	1 cut(s)	25
FaeI	CATG	4 cut(s)	401, 411, 520, 633
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	4 cut(s)	397, 407, 516, 629
FauNDI	CATATG	1 cut(s)	63
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	3 cut(s)	161, 370, 555
FokI	GGATG	1 cut(s)	657
Fsp4HI	GCNGC	3 cut(s)	161, 370, 555
FspBI	CTAG	2 cut(s)	156, 761
FspI	TGCGCA	1 cut(s)	412
GlaI	GCGC	2 cut(s)	122, 412
GluI	GCNGC	3 cut(s)	161, 370, 555
HaeIII	GGCC	1 cut(s)	606
HapII	CCGG	1 cut(s)	531
HhaI	GCGC	2 cut(s)	123, 413
Hin1II	CATG	4 cut(s)	401, 411, 520, 633
Hin6I	GCGC	2 cut(s)	121, 411
HinP1I	GCGC	2 cut(s)	121, 411
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	2 cut(s)	452, 681
HinfI	GANTC	3 cut(s)	100, 313, 561
HpaII	CCGG	1 cut(s)	531
HphI	GGTGA	3 cut(s)	80, 580, 749
Hpy166II	GTNNAC	2 cut(s)	405, 514
Hpy188I	TCNGA	3 cut(s)	15, 544, 733
Hpy188III	TCNNGA	4 cut(s)	44, 263, 346, 531
Hpy8I	GTNNAC	2 cut(s)	405, 514
Hpy99I	CGWCG	2 cut(s)	470, 733
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	2 cut(s)	115, 584
HpyCH4V	TGCA	5 cut(s)	23, 372, 497, 557, 701
HpyF3I	CTNAG	3 cut(s)	31, 300, 770
Hsp92II	CATG	4 cut(s)	401, 411, 520, 633
HspAI	GCGC	2 cut(s)	121, 411
Kpn2I	TCCGGA	1 cut(s)	530
Kzo9I	GATC	1 cut(s)	469
LmnI	GCTCC	2 cut(s)	62, 329
Lsp1109I	GCAGC	3 cut(s)	172, 356, 541
LweI	GCATC	2 cut(s)	32, 484
MaeI	CTAG	2 cut(s)	156, 761
MaeIII	GTNAC	3 cut(s)	547, 568, 755
MalI	GATC	1 cut(s)	471
MboI	GATC	1 cut(s)	469
MboII	GAAGA	3 cut(s)	322, 372, 711
MlsI	TGGCCA	1 cut(s)	606
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	2 cut(s)	169, 711
MnlI	CCTC	2 cut(s)	40, 538
Mox20I	TGGCCA	1 cut(s)	606
Mph1103I	ATGCAT	1 cut(s)	25
MroI	TCCGGA	1 cut(s)	530
MroXI	GAANNNNTTC	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	5 cut(s)	83, 144, 288, 444, 456
MslI	CAYNNNNRTG	1 cut(s)	66
Msp20I	TGGCCA	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	554
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	1 cut(s)	531
MspR9I	CCNGG	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	334
NdeI	CATATG	1 cut(s)	63
NdeII	GATC	1 cut(s)	469
NlaIII	CATG	4 cut(s)	401, 411, 520, 633
NlaIV	GGNNCC	2 cut(s)	58, 331
NmuCI	GTSAC	2 cut(s)	568, 755
NsbI	TGCGCA	1 cut(s)	412
NsiI	ATGCAT	1 cut(s)	25
NspI	RCATGY	3 cut(s)	411, 520, 633
PciI	ACATGT	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	100, 561
PkrI	GCNGC	3 cut(s)	162, 371, 556
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PscI	ACATGT	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	332
PspN4I	GGNNCC	2 cut(s)	58, 331
PstI	CTGCAG	1 cut(s)	559
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	2 cut(s)	320, 628
RsaNI	GTAC	2 cut(s)	319, 627
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	5 cut(s)	83, 144, 288, 444, 456
SatI	GCNGC	3 cut(s)	161, 370, 555
Sau3AI	GATC	1 cut(s)	469
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	334
SfaNI	GCATC	2 cut(s)	32, 484
SfcI	CTRYAG	1 cut(s)	555
SmiI	ATTTAAAT	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SspI	AATATT	1 cut(s)	296
SspMI	CTAG	2 cut(s)	156, 761
StyD4I	CCNGG	1 cut(s)	332
SwaI	ATTTAAAT	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	115, 584
TaqI	TCGA	3 cut(s)	43, 389, 468
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	2 cut(s)	100, 561
Tru1I	TTAA	5 cut(s)	83, 144, 288, 444, 456
Tru9I	TTAA	5 cut(s)	83, 144, 288, 444, 456
TseFI	GTSAC	2 cut(s)	568, 755
TseI	GCWGC	3 cut(s)	160, 369, 554
Tsp45I	GTSAC	2 cut(s)	568, 755
TspDTI	ATGAA	7 cut(s)	63, 230, 323, 437, 493, 612, 659
Vha464I	CTTAAG	1 cut(s)	455
XapI	RAATTY	3 cut(s)	500, 525, 599
XceI	RCATGY	3 cut(s)	411, 520, 633
XmiI	GTMKAC	1 cut(s)	404
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	2 cut(s)	156, 761
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.