Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007491

Physical Location & Seq

Genomic Coordinates Forward (+)

36303146 .. 36305820

Gene Structure 2675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1270800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCAAATGAGGCGAATATATGGTTCACGATGATTGTGGTTATGGTGATTTTACTGTCACAGTCTTCTCTTGTTTATGGAGCACCACAAGTACCTTGTTTTTTCATTTTTGGGGATTCATTGGCCGACAATGGTAACAATAACAACCGCCGGACCTCTGCCAAAGTGAATTACCATCCCTACGGGATTGACTATCCCGCCGGACCAACAGGAAGGTTTTGCAATGGCCGCACCACAGTTGACATATTAGCTCAACTTTTGGGTTTTGAGAATCCCATCCCACCATATGCAACTGCCAGAGGCCCAGAAATATTAAAAGGTTTGAATTATGCATCAGGCGGAGGAGGAATTCGAGCAGAAACTTCATACCAACAGGGAGATGTTATCAGCTTAGATCAGCAGCTACTGAATCACAAATTCACAGCCTCGCGCATTGCTTCTATTCTGAGAAGTAAACGATCAGCTGGGCAGTACTTGAATAAATGCTTATATTCAGTCGGAATGGGTAGCAATGACTACATTAATAACTACTTCTTGCCTGAACTTTATCCCACCAGTCGCCTATACACCCCCGAGCAATATGCCACTGTTCTCGTTCAACAATATTCTCGCCAAATCATGAGTTTGTACGAGAGTGGAGCAAGGAAGGTAGCATTGATTGGAATTGGCTTAATTGGATGCACTCCAAGTGCAATTTCAGCGTTTGGTACAAATGGGTCCGCGTGTGTTGATAAACTGAACAGTGCTGCCCAAATGTTTAACCAAAATCTTGTATCTCTGGTCGATCAGCTCAACACCGATTTGACCGATGCAAAATTCATCTATGTCAACAGCTTTGGAATGGGCTCAGGAGACCCTGCAGCTGCTGGATTCAAGGTTGTGAATGTTGGTTGCTGCCCAATAAATAGTTTTGGTCTATGTGCTGAAGGGCAAACTCCATGCCAGAATAGGAGTGAGTACGTGTTCTGGGACGGATTTCATCCTACAGAGGCCTTGAATGTCATCACTGCAGCAAGAACTTACTCAGAATTCGACCCATCGGACACTTACCCGATGGATATCAGTCACCTAGTTCAGCTTAGCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

363

Amino Acids

39.37

Weight (kDa)

5.59

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	35 - 337	1.3e-32	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007491)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710
malus_domestica	MD00G1093900.v1.1 MD10G1270800.v1.1 MD10G1270900.v1.1
prunus_persica	Prupe.4G070700_v2.0.a1 Prupe.4G070900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0012441 RchiOBHm_Chr5g0012451
rosa_laevigata	RLG00000031914 RLG00000031916
rosa_multiflora	Rmu_sc0003469.1_g000005
rosa_roxburghii	Rroxscaffold_1G00064210 Rroxscaffold_1G00064220 Rroxscaffold_1G00064230
rosa_rugosa	Rorug05G0001500
rosa_samantha	Rh5AG095700 Rh5BG091900 Rh5BG092000 Rh5CG104700 Rh5DG091300
rosa_wichuraiana	Rw5G008370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	430, 722
AciI	CCGC	5 cut(s)	148, 198, 229, 339, 720
AcoI	YGGCCR	2 cut(s)	123, 226
AcsI	RAATTY	4 cut(s)	348, 416, 815, 1028
AcuI	CTGAAG	1 cut(s)	945
AfaI	GTAC	5 cut(s)	93, 473, 629, 709, 959
AflIII	ACRYGT	1 cut(s)	960
AgsI	TTSAA	5 cut(s)	325, 478, 599, 874, 997
AjuI	GAANNNNNNNTTGG	2 cut(s)	679, 711
AluBI	AGCT	8 cut(s)	251, 390, 403, 464, 790, 834, 863, 1078
AluI	AGCT	8 cut(s)	251, 390, 403, 464, 790, 834, 863, 1078
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	846
AlwNI	CAGNNNCTG	2 cut(s)	406, 866
Ama87I	CYCGRG	1 cut(s)	572
AoxI	GGCC	4 cut(s)	123, 226, 301, 990
ApeKI	GCWGC	6 cut(s)	400, 746, 860, 863, 894, 1010
ApoI	RAATTY	4 cut(s)	348, 416, 815, 1028
AseI	ATTAAT	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	4 cut(s)	153, 203, 302, 717
AsuHPI	GGTGA	2 cut(s)	58, 1058
AvaI	CYCGRG	1 cut(s)	572
AvaII	GGWCC	3 cut(s)	153, 203, 717
BanII	GRGCYC	1 cut(s)	848
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	6 cut(s)	412, 733, 850, 872, 881, 1022
BccI	CCATC	4 cut(s)	183, 284, 1045, 1048
BcgI	CGANNNNNNTGC	2 cut(s)	563, 597
BcoDI	GTCTC	1 cut(s)	846
BfaI	CTAG	1 cut(s)	1070
BfmI	CTRYAG	3 cut(s)	858, 984, 1008
BisI	GCNGC	7 cut(s)	229, 401, 747, 861, 864, 895, 1011
BlpI	GCTNAGC	1 cut(s)	1079
BlsI	GCNGC	7 cut(s)	230, 402, 748, 862, 865, 896, 1012
BmcAI	AGTACT	1 cut(s)	473
Bme18I	GGWCC	3 cut(s)	153, 203, 717
BmeT110I	CYCGRG	1 cut(s)	572
BmgT120I	GGNCC	4 cut(s)	153, 203, 302, 717
BmiI	GGNNCC	1 cut(s)	718
BmsI	GCATC	3 cut(s)	341, 668, 799
BpiI	GAAGAC	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	847
Bpu1102I	GCTNAGC	1 cut(s)	1079
BsaAI	YACGTR	1 cut(s)	961
BsaBI	GATNNNNATC	1 cut(s)	1058
BsaI	GGTCTC	1 cut(s)	846
Bse1I	ACTGG	1 cut(s)	555
Bse3DI	GCAATG	3 cut(s)	229, 432, 517
Bse8I	GATNNNNATC	1 cut(s)	1058
BseGI	GGATG	4 cut(s)	175, 276, 683, 979
BseJI	GATNNNNATC	1 cut(s)	1058
BseMI	GCAATG	3 cut(s)	229, 432, 517
BseMII	CTCAG	3 cut(s)	437, 861, 1038
BseNI	ACTGG	1 cut(s)	555
BseRI	GAGGAG	1 cut(s)	357
BseXI	GCAGC	6 cut(s)	412, 733, 850, 872, 881, 1022
BseYI	CCCAGC	1 cut(s)	464
Bsh1236I	CGCG	2 cut(s)	430, 722
BshFI	GGCC	4 cut(s)	125, 228, 303, 992
BsiHKAI	GWGCWC	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	572
BsiSI	CCGG	2 cut(s)	151, 201
BslFI	GGGAC	1 cut(s)	983
BsmAI	GTCTC	1 cut(s)	846
BsmFI	GGGAC	1 cut(s)	983
BsnI	GGCC	4 cut(s)	125, 228, 303, 992
Bso31I	GGTCTC	1 cut(s)	846
BsoBI	CYCGRG	1 cut(s)	572
Bsp1286I	GDGCHC	2 cut(s)	85, 848
Bsp143I	GATC	3 cut(s)	394, 458, 784
Bsp1720I	GCTNAGC	1 cut(s)	1079
BspACI	CCGC	5 cut(s)	148, 198, 229, 339, 720
BspANI	GGCC	4 cut(s)	125, 228, 303, 992
BspCNI	CTCAG	3 cut(s)	438, 860, 1037
BspFNI	CGCG	2 cut(s)	430, 722
BspHI	TCATGA	1 cut(s)	618
BspLI	GGNNCC	1 cut(s)	718
BspMAI	CTGCAG	2 cut(s)	862, 1012
BspTNI	GGTCTC	1 cut(s)	846
BsrDI	GCAATG	3 cut(s)	229, 432, 517
BsrI	ACTGG	1 cut(s)	555
BssMI	GATC	3 cut(s)	394, 458, 784
Bst4CI	ACNGT	5 cut(s)	57, 63, 238, 589, 743
BstBAI	YACGTR	1 cut(s)	961
BstDEI	CTNAG	5 cut(s)	391, 446, 847, 1024, 1079
BstF5I	GGATG	4 cut(s)	175, 276, 683, 979
BstFNI	CGCG	2 cut(s)	430, 722
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	3 cut(s)	397, 461, 787
BstMAI	GTCTC	1 cut(s)	846
BstMBI	GATC	3 cut(s)	394, 458, 784
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 228, 698
BstSFI	CTRYAG	3 cut(s)	858, 984, 1008
BstUI	CGCG	2 cut(s)	430, 722
BstV1I	GCAGC	6 cut(s)	412, 733, 850, 872, 881, 1022
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	4 cut(s)	125, 228, 303, 992
BtsCI	GGATG	4 cut(s)	175, 276, 683, 979
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	3 cut(s)	585, 748, 1005
CaiI	CAGNNNCTG	2 cut(s)	406, 866
CciI	TCATGA	1 cut(s)	618
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	4 cut(s)	153, 203, 302, 717
Csp6I	GTAC	5 cut(s)	92, 472, 628, 708, 958
CviAII	CATG	2 cut(s)	619, 939
CviQI	GTAC	5 cut(s)	92, 472, 628, 708, 958
DdeI	CTNAG	5 cut(s)	391, 446, 847, 1024, 1079
DpnI	GATC	3 cut(s)	396, 460, 786
DpnII	GATC	3 cut(s)	394, 458, 784
EaeI	YGGCCR	2 cut(s)	123, 226
EciI	GGCGGA	1 cut(s)	354
Eco147I	AGGCCT	1 cut(s)	992
Eco24I	GRGCYC	1 cut(s)	848
Eco31I	GGTCTC	1 cut(s)	846
Eco32I	GATATC	1 cut(s)	1060
Eco47I	GGWCC	3 cut(s)	153, 203, 717
Eco57I	CTGAAG	1 cut(s)	945
Eco88I	CYCGRG	1 cut(s)	572
EcoRI	GAATTC	2 cut(s)	348, 1028
EcoRV	GATATC	1 cut(s)	1060
EcoT22I	ATGCAT	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	848
FaeI	CATG	2 cut(s)	622, 942
FaqI	GGGAC	1 cut(s)	983
FatI	CATG	2 cut(s)	618, 938
FauI	CCCGC	1 cut(s)	205
FauNDI	CATATG	1 cut(s)	286
Fnu4HI	GCNGC	7 cut(s)	229, 401, 747, 861, 864, 895, 1011
FokI	GGATG	4 cut(s)	162, 263, 690, 966
FriOI	GRGCYC	1 cut(s)	848
Fsp4HI	GCNGC	7 cut(s)	229, 401, 747, 861, 864, 895, 1011
FspBI	CTAG	1 cut(s)	1070
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	7 cut(s)	229, 401, 747, 861, 864, 895, 1011
GsaI	CCCAGC	1 cut(s)	468
HaeIII	GGCC	4 cut(s)	125, 228, 303, 992
HapII	CCGG	2 cut(s)	151, 201
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	2 cut(s)	622, 942
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	2 cut(s)	241, 829
HindII	GTYRAC	2 cut(s)	241, 829
HinfI	GANTC	4 cut(s)	116, 271, 409, 870
HpaII	CCGG	2 cut(s)	151, 201
HphI	GGTGA	2 cut(s)	58, 1058
Hpy166II	GTNNAC	4 cut(s)	27, 241, 455, 829
Hpy188I	TCNGA	4 cut(s)	447, 500, 1027, 1042
Hpy188III	TCNNGA	3 cut(s)	28, 619, 849
Hpy8I	GTNNAC	4 cut(s)	27, 241, 455, 829
HpyAV	CCTTC	3 cut(s)	207, 640, 920
HpyCH4III	ACNGT	5 cut(s)	57, 63, 238, 589, 743
HpyCH4IV	ACGT	1 cut(s)	960
HpyCH4V	TGCA	8 cut(s)	222, 290, 332, 681, 692, 812, 860, 1010
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 228, 698
HpyF3I	CTNAG	5 cut(s)	391, 446, 847, 1024, 1079
HpySE526I	ACGT	1 cut(s)	960
Hsp92II	CATG	2 cut(s)	622, 942
HspAI	GCGC	1 cut(s)	430
Kzo9I	GATC	3 cut(s)	394, 458, 784
LmnI	GCTCC	2 cut(s)	80, 638
Lsp1109I	GCAGC	6 cut(s)	412, 733, 850, 872, 881, 1022
LweI	GCATC	3 cut(s)	341, 668, 799
MaeI	CTAG	1 cut(s)	1070
MaeII	ACGT	1 cut(s)	960
MaeIII	GTNAC	3 cut(s)	57, 134, 1064
MalI	GATC	3 cut(s)	396, 460, 786
MboI	GATC	3 cut(s)	394, 458, 784
MboII	GAAGA	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	85, 848
MluCI	AATT	9 cut(s)	169, 325, 348, 416, 663, 672, 693, 815, 1028
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	7 cut(s)	4, 166, 293, 335, 338, 436, 982
Mph1103I	ATGCAT	1 cut(s)	334
MseI	TTAA	4 cut(s)	314, 522, 671, 759
MspA1I	CMGCKG	2 cut(s)	464, 863
MspI	CCGG	2 cut(s)	151, 201
MvnI	CGCG	2 cut(s)	430, 722
MwoI	GCNNNNNNNGC	3 cut(s)	11, 228, 698
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	3 cut(s)	394, 458, 784
NlaIII	CATG	2 cut(s)	622, 942
NlaIV	GGNNCC	1 cut(s)	718
NmuCI	GTSAC	2 cut(s)	57, 1064
NsiI	ATGCAT	1 cut(s)	334
PagI	TCATGA	1 cut(s)	618
PceI	AGGCCT	1 cut(s)	992
PfeI	GAWTC	4 cut(s)	116, 271, 409, 870
PkrI	GCNGC	7 cut(s)	230, 402, 748, 862, 865, 896, 1012
Ppu21I	YACGTR	1 cut(s)	961
PshBI	ATTAAT	1 cut(s)	522
PspFI	CCCAGC	1 cut(s)	464
PspN4I	GGNNCC	1 cut(s)	718
PspPI	GGNCC	4 cut(s)	153, 203, 302, 717
PstI	CTGCAG	2 cut(s)	862, 1012
PstNI	CAGNNNCTG	2 cut(s)	406, 866
PvuII	CAGCTG	2 cut(s)	464, 863
RsaI	GTAC	5 cut(s)	93, 473, 629, 709, 959
RsaNI	GTAC	5 cut(s)	92, 472, 628, 708, 958
SaqAI	TTAA	4 cut(s)	314, 522, 671, 759
SatI	GCNGC	7 cut(s)	229, 401, 747, 861, 864, 895, 1011
Sau3AI	GATC	3 cut(s)	394, 458, 784
Sau96I	GGNCC	4 cut(s)	153, 203, 302, 717
ScaI	AGTACT	1 cut(s)	473
SduI	GDGCHC	2 cut(s)	85, 848
SfaNI	GCATC	3 cut(s)	341, 668, 799
SfcI	CTRYAG	3 cut(s)	858, 984, 1008
SinI	GGWCC	3 cut(s)	153, 203, 717
Sse9I	AATT	9 cut(s)	169, 325, 348, 416, 663, 672, 693, 815, 1028
SseBI	AGGCCT	1 cut(s)	992
SsiI	CCGC	5 cut(s)	148, 198, 229, 339, 720
SspI	AATATT	2 cut(s)	312, 605
SspMI	CTAG	1 cut(s)	1070
StuI	AGGCCT	1 cut(s)	992
TaaI	ACNGT	5 cut(s)	57, 63, 238, 589, 743
TaiI	ACGT	1 cut(s)	963
TaqI	TCGA	3 cut(s)	352, 783, 1032
TaqII	GACCGA	1 cut(s)	821
TasI	AATT	9 cut(s)	169, 325, 348, 416, 663, 672, 693, 815, 1028
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	4 cut(s)	116, 271, 409, 870
Tru1I	TTAA	4 cut(s)	314, 522, 671, 759
Tru9I	TTAA	4 cut(s)	314, 522, 671, 759
TscAI	CASTG	3 cut(s)	592, 748, 1012
TseFI	GTSAC	2 cut(s)	57, 1064
TseI	GCWGC	6 cut(s)	400, 746, 860, 863, 894, 1010
Tsp45I	GTSAC	2 cut(s)	57, 1064
TspDTI	ATGAA	5 cut(s)	94, 108, 354, 808, 968
TspGWI	ACGGA	1 cut(s)	987
TspRI	CASTG	3 cut(s)	592, 748, 1012
VpaK11BI	GGWCC	3 cut(s)	153, 203, 717
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	4 cut(s)	348, 416, 815, 1028
XspI	CTAG	1 cut(s)	1070
ZrmI	AGTACT	1 cut(s)	473
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.