Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007491

Physical Location & Seq

Genomic Coordinates Reverse (-)

8966249 .. 8968341

Gene Structure 2093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G008370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGTAAAAGATACACTGAAATGGTTAATGGTGATTGCTGTTTTGGTGGTTTCAATATCACAATCTTGCGTTCATGGAGCGCCACAAGTACCTTGCTTCTTCATTTTCGGTGATTCATTGGCCGATAACGGCAATAACAACCTCCTACTGACTTTGGCCAAAGTGAACTATGCGCCGTACGGAATTGATTATCCCGGTGGAGTAACAACAGGAAGATTTTCCAATGGCAAAACTACTGTTGATATACTAGCTGAATTTCTGGGTTTTGAGAATCCCATCCCACCATTTGCAACTACCAACATACAGGACATTGTTAAAGGTCTTAATTATGCATCTGGCGCCGCAGGGATTCGAGCAGAAACTGGCTCCAATTTGGGTGATCACATCAGCTTAGACCGGCAGTTACTGAATCACCAAATCACAACCTTGCTCATTGCTTCAATACTTCGAGCAAATACACTACAAACCTTGCAGTACTTGAACAAGTGCCTATACATAGTGGGAATGGGTAACAATGATTACATTAACAATTACTTCATGCCTCAGTTTTATCCCACCAGCAAGAGATACACCCCTGACCAATATGCTTCGGTTCTTATTGACCAATATACTAGCCAAATACTGACTTTGTACAACAAGTATGGAGCAAGGAAGGTTGCCTTGGTTGGACTGGGACTCATAGGTTGCACTCCTAATGCAATTTCGAAAACGAAGGGGATCACATGTGTAGATGAATTGAACAGTGCGGCCCAGCTTTTCAACCAAAAGCTTGTACCTCTTGTTGATCAGCTCAATACCAATTTGACTGATGCAAAATTCATCTATGTCAACAGTACTGGAATGAGTTCTGGGGATCCTACATCTGTTGGATTCAAGGTTTTGAATGTTGGGTGTTGTCCGGTGAATAGTGTTGGCCAATGTATTCGTTCCGGAACTCCATGCCAGAATAGGAGTGAGTATGTGTTCTGGGACTCATTCCACCCTACTGAGGCATCGAACCGAATTACTGCATTCAGAACATACGAAAGTGTTGACCCCACGGATAATTATCCTATGGATGTCAGTCACTTAGTTCAGCTTAAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

362

Amino Acids

39.64

Weight (kDa)

6.5

Isoelectric Point (pI)

25.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	34 - 337	1.8e-30	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007491)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710
malus_domestica	MD00G1093900.v1.1 MD10G1270800.v1.1 MD10G1270900.v1.1
prunus_persica	Prupe.4G070700_v2.0.a1 Prupe.4G070900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0012441 RchiOBHm_Chr5g0012451
rosa_laevigata	RLG00000031914 RLG00000031916
rosa_multiflora	Rmu_sc0003469.1_g000005
rosa_roxburghii	Rroxscaffold_1G00064210 Rroxscaffold_1G00064220 Rroxscaffold_1G00064230
rosa_rugosa	Rorug05G0001500
rosa_samantha	Rh5AG095700 Rh5BG091900 Rh5BG092000 Rh5CG104700 Rh5DG091300
rosa_wichuraiana	Rw5G008370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	338
AccIII	TCCGGA	1 cut(s)	929
AciI	CCGC	2 cut(s)	342, 746
AclWI	GGATC	3 cut(s)	725, 848, 861
AcoI	YGGCCR	3 cut(s)	120, 156, 913
AcsI	RAATTY	2 cut(s)	254, 815
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	6 cut(s)	90, 179, 476, 632, 774, 835
AfiI	CCNNNNNNNGG	1 cut(s)	988
AflIII	ACRYGT	1 cut(s)	722
AgsI	TTSAA	7 cut(s)	54, 441, 481, 739, 760, 874, 883
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AluBI	AGCT	6 cut(s)	251, 390, 754, 769, 790, 1078
AluI	AGCT	6 cut(s)	251, 390, 754, 769, 790, 1078
AlwI	GGATC	3 cut(s)	725, 848, 861
AlwNI	CAGNNNCTG	2 cut(s)	362, 406
Aor13HI	TCCGGA	1 cut(s)	929
AoxI	GGCC	4 cut(s)	120, 156, 747, 913
ApoI	RAATTY	2 cut(s)	254, 815
Asp700I	GAANNNNTTC	2 cut(s)	217, 844
AspLEI	GCGC	3 cut(s)	82, 175, 341
AspS9I	GGNCC	1 cut(s)	748
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	5 cut(s)	43, 122, 389, 404, 913
AsuII	TTCGAA	1 cut(s)	704
BalI	TGGCCA	2 cut(s)	158, 915
BamHI	GGATCC	1 cut(s)	853
BanI	GGYRCC	1 cut(s)	338
BccI	CCATC	1 cut(s)	284
BceAI	ACGGC	2 cut(s)	145, 160
BclI	TGATCA	2 cut(s)	379, 784
BcnI	CCSGG	1 cut(s)	195
BfaI	CTAG	2 cut(s)	248, 612
BfoI	RGCGCY	2 cut(s)	83, 342
BisI	GCNGC	2 cut(s)	342, 747
BlsI	GCNGC	2 cut(s)	343, 748
BmcAI	AGTACT	2 cut(s)	476, 835
Bme1390I	CCNGG	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	748
BmiI	GGNNCC	3 cut(s)	340, 367, 855
BmrFI	CCNGG	1 cut(s)	195
BmrI	ACTGGG	1 cut(s)	680
BmsI	GCATC	3 cut(s)	341, 799, 1001
BmuI	ACTGGG	1 cut(s)	680
Bpu14I	TTCGAA	1 cut(s)	704
BpuMI	CCSGG	1 cut(s)	195
BsaBI	GATNNNNATC	1 cut(s)	1047
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	660, 1038
BsaWI	WCCGGW	2 cut(s)	898, 929
Bsc4I	CCNNNNNNNGG	1 cut(s)	988
Bse118I	RCCGGY	1 cut(s)	396
Bse1I	ACTGG	3 cut(s)	367, 675, 841
Bse3DI	GCAATG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	1047
BseAI	TCCGGA	1 cut(s)	929
BseDI	CCNNGG	2 cut(s)	660, 1038
BseGI	GGATG	2 cut(s)	276, 1063
BseJI	GATNNNNATC	1 cut(s)	1047
BseLI	CCNNNNNNNGG	1 cut(s)	988
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	2 cut(s)	557, 978
BseNI	ACTGG	3 cut(s)	367, 675, 841
BseYI	CCCAGC	1 cut(s)	750
BshFI	GGCC	4 cut(s)	122, 158, 749, 915
BshNI	GGYRCC	1 cut(s)	338
BsiSI	CCGG	4 cut(s)	195, 397, 899, 930
BsiWI	CGTACG	1 cut(s)	177
BslFI	GGGAC	2 cut(s)	687, 983
BslI	CCNNNNNNNGG	1 cut(s)	988
BsmFI	GGGAC	2 cut(s)	687, 983
BsmI	GAATGC	1 cut(s)	1010
BsnI	GGCC	4 cut(s)	122, 158, 749, 915
Bsp119I	TTCGAA	1 cut(s)	704
Bsp13I	TCCGGA	1 cut(s)	929
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	4 cut(s)	379, 717, 784, 853
BspACI	CCGC	2 cut(s)	342, 746
BspANI	GGCC	4 cut(s)	122, 158, 749, 915
BspCNI	CTCAG	2 cut(s)	556, 979
BspEI	TCCGGA	1 cut(s)	929
BspLI	GGNNCC	3 cut(s)	340, 367, 855
BspPI	GGATC	3 cut(s)	725, 848, 861
BspT104I	TTCGAA	1 cut(s)	704
BspT107I	GGYRCC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	396
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	3 cut(s)	367, 675, 841
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	2 cut(s)	660, 1038
BssMI	GATC	4 cut(s)	379, 717, 784, 853
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	660
Bst4CI	ACNGT	3 cut(s)	238, 743, 833
BstACI	GRCGYC	1 cut(s)	339
BstAUI	TGTACA	1 cut(s)	630
BstBI	TTCGAA	1 cut(s)	704
BstDEI	CTNAG	4 cut(s)	391, 543, 987, 1069
BstDSI	CCRYGG	1 cut(s)	1038
BstF5I	GGATG	2 cut(s)	276, 1063
BstH2I	RGCGCY	2 cut(s)	83, 342
BstHHI	GCGC	3 cut(s)	82, 175, 341
BstKTI	GATC	4 cut(s)	382, 720, 787, 856
BstMBI	GATC	4 cut(s)	379, 717, 784, 853
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	726
BstSCI	CCNGG	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	853
BstYI	RGATCY	1 cut(s)	853
BsuRI	GGCC	4 cut(s)	122, 158, 749, 915
BtgI	CCRYGG	1 cut(s)	1038
BtsCI	GGATG	2 cut(s)	276, 1063
BtsIMutI	CAGTG	2 cut(s)	14, 748
CaiI	CAGNNNCTG	2 cut(s)	362, 406
CfoI	GCGC	3 cut(s)	82, 175, 341
Cfr10I	RCCGGY	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	748
Csp6I	GTAC	6 cut(s)	89, 178, 475, 631, 773, 834
CviAII	CATG	4 cut(s)	74, 538, 723, 939
CviQI	GTAC	6 cut(s)	89, 178, 475, 631, 773, 834
DdeI	CTNAG	4 cut(s)	391, 543, 987, 1069
DinI	GGCGCC	1 cut(s)	340
DpnI	GATC	4 cut(s)	381, 719, 786, 855
DpnII	GATC	4 cut(s)	379, 717, 784, 853
EaeI	YGGCCR	3 cut(s)	120, 156, 913
Eco130I	CCWWGG	1 cut(s)	660
EcoT14I	CCWWGG	1 cut(s)	660
EcoT22I	ATGCAT	1 cut(s)	334
EgeI	GGCGCC	1 cut(s)	340
EheI	GGCGCC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	4 cut(s)	77, 541, 726, 942
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FaqI	GGGAC	2 cut(s)	687, 983
FatI	CATG	4 cut(s)	73, 537, 722, 938
FbaI	TGATCA	2 cut(s)	379, 784
Fnu4HI	GCNGC	2 cut(s)	342, 747
FokI	GGATG	2 cut(s)	263, 1070
Fsp4HI	GCNGC	2 cut(s)	342, 747
FspBI	CTAG	2 cut(s)	248, 612
GlaI	GCGC	3 cut(s)	81, 174, 340
GluI	GCNGC	2 cut(s)	342, 747
GsaI	CCCAGC	1 cut(s)	754
HaeII	RGCGCY	2 cut(s)	83, 342
HaeIII	GGCC	4 cut(s)	122, 158, 749, 915
HapII	CCGG	4 cut(s)	195, 397, 899, 930
HhaI	GCGC	3 cut(s)	82, 175, 341
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	4 cut(s)	77, 541, 726, 942
Hin6I	GCGC	3 cut(s)	80, 173, 339
HinP1I	GCGC	3 cut(s)	80, 173, 339
HincII	GTYRAC	2 cut(s)	829, 1033
HindII	GTYRAC	2 cut(s)	829, 1033
HindIII	AAGCTT	1 cut(s)	767
HinfI	GANTC	7 cut(s)	113, 271, 349, 409, 675, 870, 971
HpaII	CCGG	4 cut(s)	195, 397, 899, 930
HphI	GGTGA	5 cut(s)	43, 122, 389, 404, 913
Hpy166II	GTNNAC	3 cut(s)	166, 829, 1033
Hpy188I	TCNGA	1 cut(s)	1016
Hpy188III	TCNNGA	1 cut(s)	930
Hpy8I	GTNNAC	3 cut(s)	166, 829, 1033
HpyAV	CCTTC	2 cut(s)	646, 706
HpyCH4III	ACNGT	3 cut(s)	238, 743, 833
HpyCH4V	TGCA	7 cut(s)	290, 332, 472, 687, 698, 812, 1010
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	4 cut(s)	391, 543, 987, 1069
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	4 cut(s)	77, 541, 726, 942
HspAI	GCGC	3 cut(s)	80, 173, 339
KasI	GGCGCC	1 cut(s)	338
Kpn2I	TCCGGA	1 cut(s)	929
Ksp22I	TGATCA	2 cut(s)	379, 784
Kzo9I	GATC	4 cut(s)	379, 717, 784, 853
LmnI	GCTCC	3 cut(s)	77, 371, 644
LweI	GCATC	3 cut(s)	341, 799, 1001
MaeI	CTAG	2 cut(s)	248, 612
MaeIII	GTNAC	4 cut(s)	202, 402, 509, 1064
MalI	GATC	4 cut(s)	381, 719, 786, 855
MboI	GATC	4 cut(s)	379, 717, 784, 853
MboII	GAAGA	2 cut(s)	91, 225
MflI	RGATCY	1 cut(s)	853
MlsI	TGGCCA	2 cut(s)	158, 915
MluNI	TGGCCA	2 cut(s)	158, 915
Mly113I	GGCGCC	1 cut(s)	339
MlyI	GAGTC	2 cut(s)	669, 965
MmeI	TCCRAC	2 cut(s)	646, 847
MnlI	CCTC	4 cut(s)	152, 552, 786, 982
Mox20I	TGGCCA	2 cut(s)	158, 915
Mph1103I	ATGCAT	1 cut(s)	334
MroI	TCCGGA	1 cut(s)	929
MroXI	GAANNNNTTC	2 cut(s)	217, 844
MscI	TGGCCA	2 cut(s)	158, 915
MseI	TTAA	5 cut(s)	26, 315, 324, 525, 1080
MslI	CAYNNNNRTG	1 cut(s)	19
Msp20I	TGGCCA	2 cut(s)	158, 915
MspI	CCGG	4 cut(s)	195, 397, 899, 930
MspR9I	CCNGG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	1010
MwoI	GCNNNNNNNGC	1 cut(s)	338
NarI	GGCGCC	1 cut(s)	339
NciI	CCSGG	1 cut(s)	195
NdeII	GATC	4 cut(s)	379, 717, 784, 853
NlaIII	CATG	4 cut(s)	77, 541, 726, 942
NlaIV	GGNNCC	3 cut(s)	340, 367, 855
NmuCI	GTSAC	1 cut(s)	1064
NsiI	ATGCAT	1 cut(s)	334
NspI	RCATGY	1 cut(s)	726
NspV	TTCGAA	1 cut(s)	704
PciI	ACATGT	1 cut(s)	722
PctI	GAATGC	1 cut(s)	1010
PdmI	GAANNNNTTC	2 cut(s)	217, 844
PfeI	GAWTC	5 cut(s)	113, 271, 349, 409, 870
Pfl23II	CGTACG	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	343, 748
PleI	GAGTC	2 cut(s)	669, 965
PluTI	GGCGCC	1 cut(s)	342
PpsI	GAGTC	2 cut(s)	669, 965
PscI	ACATGT	1 cut(s)	722
PspFI	CCCAGC	1 cut(s)	750
PspLI	CGTACG	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	340, 367, 855
PspPI	GGNCC	1 cut(s)	748
PstNI	CAGNNNCTG	2 cut(s)	362, 406
PsuI	RGATCY	1 cut(s)	853
RsaI	GTAC	6 cut(s)	90, 179, 476, 632, 774, 835
RsaNI	GTAC	6 cut(s)	89, 178, 475, 631, 773, 834
RseI	CAYNNNNRTG	1 cut(s)	19
SaqAI	TTAA	5 cut(s)	26, 315, 324, 525, 1080
SatI	GCNGC	2 cut(s)	342, 747
Sau3AI	GATC	4 cut(s)	379, 717, 784, 853
Sau96I	GGNCC	1 cut(s)	748
ScaI	AGTACT	2 cut(s)	476, 835
SchI	GAGTC	2 cut(s)	669, 965
ScrFI	CCNGG	1 cut(s)	195
SfaNI	GCATC	3 cut(s)	341, 799, 1001
SfoI	GGCGCC	1 cut(s)	340
SfuI	TTCGAA	1 cut(s)	704
SmiMI	CAYNNNNRTG	1 cut(s)	19
SsiI	CCGC	2 cut(s)	342, 746
SspDI	GGCGCC	1 cut(s)	338
SspMI	CTAG	2 cut(s)	248, 612
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	3 cut(s)	238, 743, 833
TaqI	TCGA	4 cut(s)	352, 448, 704, 995
TatI	WGTACW	3 cut(s)	474, 630, 833
TauI	GCSGC	2 cut(s)	344, 749
TfiI	GAWTC	5 cut(s)	113, 271, 349, 409, 870
Tru1I	TTAA	5 cut(s)	26, 315, 324, 525, 1080
Tru9I	TTAA	5 cut(s)	26, 315, 324, 525, 1080
TscAI	CASTG	2 cut(s)	21, 748
TseFI	GTSAC	1 cut(s)	1064
Tsp45I	GTSAC	1 cut(s)	1064
TspDTI	ATGAA	6 cut(s)	62, 91, 105, 526, 747, 808
TspGWI	ACGGA	2 cut(s)	195, 1055
TspRI	CASTG	2 cut(s)	21, 748
XapI	RAATTY	2 cut(s)	254, 815
XceI	RCATGY	1 cut(s)	726
XmnI	GAANNNNTTC	2 cut(s)	217, 844
XspI	CTAG	2 cut(s)	248, 612
ZrmI	AGTACT	2 cut(s)	476, 835
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.