Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007491

Physical Location & Seq

Genomic Coordinates Reverse (-)

3468612 .. 3470927

Gene Structure 2316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G070700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCGACGAATGATACAGTAATATGGACGTTGATGATTGTTGTTTTGGTGGTTTTCATATCACAATCTTGTGTTCATGGAGAATCACGAGTGCCTTGTTTTTTCATTTTTGGTGATTCATTGGCGGATAATGGCAACAACAACCACCTCAAGACCCCGGCTAAAGCCAATTACCTGCCTTATGGAATTGATTTTCCCAAGGGACCAACAGGAAGATTTACCAACGGTCGAACCTTCGTTGATATAGTAGCTGAACTTTTGGGTTTTGAGAACCCCATCCCATGCTTTGCAACTACCAGGCGGCCCAAGGACATGGTTAGAGGTCTGAATTATGCATCTGGCTCAGCAGGACTTCGAGATGAAACTGGCACCCATATGGGCGCTAATGTCAACTTAAATAAGCAGCTGCTGAATCACAAAGCTACAGTCAAGCACATTGCTTCTGTAATGGGACATAAACAATCATCTAATAAGCACTATTTAAACAAGTGCTTATATTCAGTTGGAATGGGTAGCAATGACTACATGAACAATTACTTCCAGCCCAAGTTTTATCCCACCAGTACCAAATATAACCCTGAACAATATGCTACACTTCTCATTAAACAATATTCTCGCCAAATAAAGACTTTGTACATGTATGGAGCAAGGAAGGTGGCCTTGGTTGGATTGGGACAAGTAGGTTGCGCTCCGTATTCAATTTCGACTGGAACTAATGGGTCTGCGTGCGTGGATAAAATGAACGATGCAGTTCAATTTTTCAACGAAAAGCTTAAGTCTCTCGTCGATCAGCTCAACACCAATCTCACAGATGCAAAATTCATCTATGTTAACACTTATGGAATGTCTGGAAGTTCAGCGGAGCGTACAACAACTGGATTGAAGGTTTCGGACGTTAATTGTTGTCCAGTAAATGAAATAGGTCAATGTGTTCCTTCCGCAGCTCCATGCAAGAATAGGAGCGAGCATATGTTCTGGGACTTATTCCATCCTACTGAGATGGCCAATTTAGTCACTGCAAGACGAGCATACAATTCTTCTAACCAGTCTGACACTTACCCAATGAATATAGGTCACCTAGCTAAACTTAGGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

366

Amino Acids

40.41

Weight (kDa)

9.1

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007491)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710
malus_domestica	MD00G1093900.v1.1 MD10G1270800.v1.1 MD10G1270900.v1.1
prunus_persica	Prupe.4G070700_v2.0.a1 Prupe.4G070900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0012441 RchiOBHm_Chr5g0012451
rosa_laevigata	RLG00000031914 RLG00000031916
rosa_multiflora	Rmu_sc0003469.1_g000005
rosa_roxburghii	Rroxscaffold_1G00064210 Rroxscaffold_1G00064220 Rroxscaffold_1G00064230
rosa_rugosa	Rorug05G0001500
rosa_samantha	Rh5AG095700 Rh5BG091900 Rh5BG092000 Rh5CG104700 Rh5DG091300
rosa_wichuraiana	Rw5G008370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	368
AciI	CCGC	4 cut(s)	125, 301, 860, 939
AcoI	YGGCCR	1 cut(s)	1002
AcsI	RAATTY	1 cut(s)	818
AfaI	GTAC	3 cut(s)	565, 635, 868
AflII	CTTAAG	1 cut(s)	773
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	4 cut(s)	699, 755, 763, 883
AjnI	CCWGG	1 cut(s)	296
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AluBI	AGCT	7 cut(s)	251, 406, 422, 772, 793, 944, 1082
AluI	AGCT	7 cut(s)	251, 406, 422, 772, 793, 944, 1082
Alw26I	GTCTC	1 cut(s)	783
AlwNI	CAGNNNCTG	1 cut(s)	409
AoxI	GGCC	3 cut(s)	302, 657, 1002
ApeKI	GCWGC	3 cut(s)	403, 406, 941
ApoI	RAATTY	1 cut(s)	818
ArsI	GACNNNNNNTTYG	2 cut(s)	411, 443
AspLEI	GCGC	2 cut(s)	383, 689
AspS9I	GGNCC	2 cut(s)	203, 303
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	125, 1067
AvaII	GGWCC	1 cut(s)	203
BalI	TGGCCA	1 cut(s)	1004
BanI	GGYRCC	1 cut(s)	368
BauI	CACGAG	1 cut(s)	87
BbvI	GCAGC	3 cut(s)	393, 415, 953
BccI	CCATC	3 cut(s)	284, 994, 996
BciT130I	CCWGG	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	783
BfaI	CTAG	1 cut(s)	1079
BfmI	CTRYAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	384
BfrI	CTTAAG	1 cut(s)	773
BfuAI	ACCTGC	1 cut(s)	183
BisI	GCNGC	4 cut(s)	302, 404, 407, 942
BlpI	GCTNAGC	1 cut(s)	343
BlsI	GCNGC	4 cut(s)	303, 405, 408, 943
Bme1390I	CCNGG	2 cut(s)	158, 298
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	203, 303
BmiI	GGNNCC	2 cut(s)	204, 370
BmrFI	CCNGG	2 cut(s)	158, 298
BmsI	GCATC	3 cut(s)	344, 736, 802
Bpu1102I	GCTNAGC	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	158
BsaJI	CCNNGG	4 cut(s)	156, 198, 306, 660
Bse1I	ACTGG	6 cut(s)	370, 561, 712, 880, 908, 1045
Bse3DI	GCAATG	2 cut(s)	435, 523
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	4 cut(s)	156, 198, 306, 660
BseGI	GGATG	2 cut(s)	276, 988
BseMI	GCAATG	2 cut(s)	435, 523
BseMII	CTCAG	2 cut(s)	357, 987
BseNI	ACTGG	6 cut(s)	370, 561, 712, 880, 908, 1045
BseXI	GCAGC	3 cut(s)	393, 415, 953
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	3 cut(s)	304, 659, 1004
BshNI	GGYRCC	1 cut(s)	368
BsiEI	CGRYCG	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	4 cut(s)	216, 465, 687, 992
BsmAI	GTCTC	1 cut(s)	783
BsmFI	GGGAC	4 cut(s)	216, 465, 687, 992
BsnI	GGCC	3 cut(s)	304, 659, 1004
Bsp1407I	TGTACA	1 cut(s)	633
Bsp143I	GATC	1 cut(s)	787
Bsp1720I	GCTNAGC	1 cut(s)	343
BspACI	CCGC	4 cut(s)	125, 301, 860, 939
BspANI	GGCC	3 cut(s)	304, 659, 1004
BspCNI	CTCAG	2 cut(s)	356, 988
BspLI	GGNNCC	2 cut(s)	204, 370
BspMI	ACCTGC	1 cut(s)	183
BspT107I	GGYRCC	1 cut(s)	368
BspTI	CTTAAG	1 cut(s)	773
BsrDI	GCAATG	2 cut(s)	435, 523
BsrGI	TGTACA	1 cut(s)	633
BsrI	ACTGG	6 cut(s)	370, 561, 712, 880, 908, 1045
BssECI	CCNNGG	4 cut(s)	156, 198, 306, 660
BssMI	GATC	1 cut(s)	787
BssSI	CACGAG	1 cut(s)	87
BssT1I	CCWWGG	3 cut(s)	198, 306, 660
Bst2BI	CACGAG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	3 cut(s)	19, 227, 427
BstAFI	CTTAAG	1 cut(s)	773
BstAUI	TGTACA	1 cut(s)	633
BstC8I	GCNNGC	2 cut(s)	727, 965
BstDEI	CTNAG	3 cut(s)	343, 996, 1088
BstEII	GGTNACC	1 cut(s)	1073
BstF5I	GGATG	2 cut(s)	276, 988
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	2 cut(s)	383, 689
BstKTI	GATC	1 cut(s)	790
BstMAI	GTCTC	1 cut(s)	783
BstMBI	GATC	1 cut(s)	787
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	1025
BstNI	CCWGG	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	640
BstPI	GGTNACC	1 cut(s)	1073
BstSCI	CCNGG	2 cut(s)	156, 296
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	3 cut(s)	393, 415, 953
BstXI	CCANNNNNNTGG	1 cut(s)	313
BsuRI	GGCC	3 cut(s)	304, 659, 1004
BtsCI	GGATG	2 cut(s)	276, 988
BtsI	GCAGTG	1 cut(s)	1014
BtsIMutI	CAGTG	1 cut(s)	1014
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	727, 965
CaiI	CAGNNNCTG	1 cut(s)	409
CfoI	GCGC	2 cut(s)	383, 689
Cfr13I	GGNCC	2 cut(s)	203, 303
Csp6I	GTAC	3 cut(s)	564, 634, 867
CspCI	CAANNNNNGTGG	2 cut(s)	636, 671
CviAII	CATG	6 cut(s)	77, 282, 313, 526, 637, 948
CviQI	GTAC	3 cut(s)	564, 634, 867
DdeI	CTNAG	3 cut(s)	343, 996, 1088
DpnI	GATC	1 cut(s)	789
DpnII	GATC	1 cut(s)	787
DraI	TTTAAA	1 cut(s)	483
EaeI	YGGCCR	1 cut(s)	1002
EciI	GGCGGA	1 cut(s)	140
Eco130I	CCWWGG	3 cut(s)	198, 306, 660
Eco47I	GGWCC	1 cut(s)	203
Eco91I	GGTNACC	1 cut(s)	1073
EcoO65I	GGTNACC	1 cut(s)	1073
EcoRII	CCWGG	1 cut(s)	296
EcoT14I	CCWWGG	3 cut(s)	198, 306, 660
EcoT22I	ATGCAT	1 cut(s)	337
ErhI	CCWWGG	3 cut(s)	198, 306, 660
FaeI	CATG	6 cut(s)	80, 285, 316, 529, 640, 951
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FaqI	GGGAC	4 cut(s)	216, 465, 687, 992
FatI	CATG	6 cut(s)	76, 281, 312, 525, 636, 947
FauNDI	CATATG	2 cut(s)	375, 969
Fnu4HI	GCNGC	4 cut(s)	302, 404, 407, 942
FokI	GGATG	2 cut(s)	263, 975
Fsp4HI	GCNGC	4 cut(s)	302, 404, 407, 942
FspBI	CTAG	1 cut(s)	1079
GlaI	GCGC	2 cut(s)	382, 688
GluI	GCNGC	4 cut(s)	302, 404, 407, 942
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	3 cut(s)	304, 659, 1004
HapII	CCGG	1 cut(s)	158
HhaI	GCGC	2 cut(s)	383, 689
Hin1II	CATG	6 cut(s)	80, 285, 316, 529, 640, 951
Hin6I	GCGC	2 cut(s)	381, 687
HinP1I	GCGC	2 cut(s)	381, 687
HincII	GTYRAC	2 cut(s)	391, 832
HindII	GTYRAC	2 cut(s)	391, 832
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	3 cut(s)	83, 116, 412
HpaI	GTTAAC	1 cut(s)	832
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	2 cut(s)	125, 1067
Hpy166II	GTNNAC	2 cut(s)	391, 832
Hpy188I	TCNGA	3 cut(s)	327, 892, 1051
Hpy188III	TCNNGA	4 cut(s)	87, 151, 356, 849
Hpy8I	GTNNAC	2 cut(s)	391, 832
Hpy99I	CGWCG	2 cut(s)	10, 788
HpyAV	CCTTC	4 cut(s)	244, 646, 877, 945
HpyCH4III	ACNGT	3 cut(s)	19, 227, 427
HpyCH4IV	ACGT	2 cut(s)	29, 894
HpyCH4V	TGCA	6 cut(s)	290, 335, 749, 815, 951, 1019
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1025
HpyF3I	CTNAG	3 cut(s)	343, 996, 1088
HpySE526I	ACGT	2 cut(s)	29, 894
Hsp92II	CATG	6 cut(s)	80, 285, 316, 529, 640, 951
HspAI	GCGC	2 cut(s)	381, 687
KspAI	GTTAAC	1 cut(s)	832
Kzo9I	GATC	1 cut(s)	787
LmnI	GCTCC	5 cut(s)	644, 694, 862, 949, 960
Lsp1109I	GCAGC	3 cut(s)	393, 415, 953
LweI	GCATC	3 cut(s)	344, 736, 802
MaeI	CTAG	1 cut(s)	1079
MaeII	ACGT	2 cut(s)	29, 894
MaeIII	GTNAC	2 cut(s)	1012, 1073
MalI	GATC	1 cut(s)	789
MboI	GATC	1 cut(s)	787
MboII	GAAGA	2 cut(s)	225, 1029
MlsI	TGGCCA	1 cut(s)	1004
MluNI	TGGCCA	1 cut(s)	1004
MmeI	TCCRAC	2 cut(s)	484, 646
MnlI	CCTC	2 cut(s)	158, 314
Mox20I	TGGCCA	1 cut(s)	1004
Mph1103I	ATGCAT	1 cut(s)	337
MscI	TGGCCA	1 cut(s)	1004
MseI	TTAA	6 cut(s)	395, 482, 603, 774, 831, 897
MslI	CAYNNNNRTG	1 cut(s)	374
Msp20I	TGGCCA	1 cut(s)	1004
MspA1I	CMGCKG	2 cut(s)	406, 860
MspCI	CTTAAG	1 cut(s)	773
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	158, 298
MvaI	CCWGG	1 cut(s)	298
MwoI	GCNNNNNNNGC	1 cut(s)	1025
NciI	CCSGG	1 cut(s)	158
NdeI	CATATG	2 cut(s)	375, 969
NdeII	GATC	1 cut(s)	787
NlaIII	CATG	6 cut(s)	80, 285, 316, 529, 640, 951
NlaIV	GGNNCC	2 cut(s)	204, 370
NmuCI	GTSAC	2 cut(s)	1012, 1073
NsiI	ATGCAT	1 cut(s)	337
NspI	RCATGY	1 cut(s)	640
PciI	ACATGT	1 cut(s)	636
PfeI	GAWTC	3 cut(s)	83, 116, 412
PkrI	GCNGC	4 cut(s)	303, 405, 408, 943
PscI	ACATGT	1 cut(s)	636
Psp6I	CCWGG	1 cut(s)	296
PspEI	GGTNACC	1 cut(s)	1073
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	2 cut(s)	204, 370
PspPI	GGNCC	2 cut(s)	203, 303
PstNI	CAGNNNCTG	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	406
RsaI	GTAC	3 cut(s)	565, 635, 868
RsaNI	GTAC	3 cut(s)	564, 634, 867
RseI	CAYNNNNRTG	1 cut(s)	374
SaqAI	TTAA	6 cut(s)	395, 482, 603, 774, 831, 897
SatI	GCNGC	4 cut(s)	302, 404, 407, 942
Sau3AI	GATC	1 cut(s)	787
Sau96I	GGNCC	2 cut(s)	203, 303
ScrFI	CCNGG	2 cut(s)	158, 298
SfaNI	GCATC	3 cut(s)	344, 736, 802
SfcI	CTRYAG	1 cut(s)	423
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	2 cut(s)	149, 773
SmoI	CTYRAG	2 cut(s)	149, 773
SsiI	CCGC	4 cut(s)	125, 301, 860, 939
SspI	AATATT	1 cut(s)	611
SspMI	CTAG	1 cut(s)	1079
StyD4I	CCNGG	2 cut(s)	156, 296
StyI	CCWWGG	3 cut(s)	198, 306, 660
TaaI	ACNGT	3 cut(s)	19, 227, 427
TaiI	ACGT	2 cut(s)	32, 897
TaqI	TCGA	4 cut(s)	229, 355, 704, 786
TatI	WGTACW	1 cut(s)	633
TauI	GCSGC	1 cut(s)	304
TfiI	GAWTC	3 cut(s)	83, 116, 412
Tru1I	TTAA	6 cut(s)	395, 482, 603, 774, 831, 897
Tru9I	TTAA	6 cut(s)	395, 482, 603, 774, 831, 897
TscAI	CASTG	1 cut(s)	1021
TseFI	GTSAC	2 cut(s)	1012, 1073
TseI	GCWGC	3 cut(s)	403, 406, 941
Tsp45I	GTSAC	2 cut(s)	1012, 1073
TspGWI	ACGGA	1 cut(s)	681
TspRI	CASTG	1 cut(s)	1021
Vha464I	CTTAAG	1 cut(s)	773
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	1 cut(s)	818
XceI	RCATGY	1 cut(s)	640
XspI	CTAG	1 cut(s)	1079
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.