Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005906

Physical Location & Seq

Genomic Coordinates Reverse (-)

5774494 .. 5777043

Gene Structure 2550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09921.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTCGGAATCTGTCCTAGCAGCTGTTGGCCAAGGGGGTTGTGAGAACCTCCGCAAATGGTGTTGTCCGCTCAAGAGCTACAGCCATGAGGATGATAGGTACTGGTTTCTGGTGTATGAGGTTGATAGAAAGACAAAGAAAACCAAGGCGACAGTGGAGAAATTAAAGAGGAAGGGGAAGCAGCCAATGAAGACTGAAGTTGTTGAGGTTGAGGAGTGTGGAAGTGGTAGGGTTAGGAATTTCCAAGTAGTAATAGCAAGAAAATTGGGGAGGTTAATGTTGCTAGAGGGTGGCGGCAGTGGTGGTGGTGGAGGGAAATTGAAGGCACAAACATGCAACTTGCCAAGCAAGTCACCGTCGGTTGCTGCTGAGAGCAGAGTGGGGGTGGTGAGAGTACGTGAAGTTGTGGGTGAGAAAGCAGGAGATGCTGAAGGCAATGGCAATGCAAGCGGTGGTGGCCCGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

156

Amino Acids

16.54

Weight (kDa)

9.46

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09921 FvH4_6g06500
malus_domestica	MD04G1201300.v1.1 MD12G1213700.v1.1
prunus_persica	Prupe.6G321400_v2.0.a1 Prupe.6G321400_v2.0.a1
pyrus_communis	pycom04g17730 pycom12g19960
rosa_chinensis	RchiOBHm_Chr3g0455651
rosa_laevigata	RLG00000000137 RLG00000000144 RLG00000000152 RLG00000000192 RLG00000000428 RLG00000000490 RLG00000025343
rosa_multiflora	Rmu_sc0002883.1_g000006
rosa_roxburghii	Rroxscaffold_6G00423630 Rroxscaffold_6G00424130
rosa_rugosa	Rorug03G0009000
rosa_samantha	Rh3AG068500 Rh3BG071000 Rh3CG069300 Rh3DG070900 Rh5BG485600 Rh6CG178600 Rh6DG170400
rosa_wichuraiana	Rw3G005490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	70
AciI	CCGC	4 cut(s)	52, 68, 294, 450
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	238
AcuI	CTGAAG	2 cut(s)	216, 450
AfaI	GTAC	2 cut(s)	101, 396
AgsI	TTSAA	1 cut(s)	322
AluBI	AGCT	2 cut(s)	23, 78
AluI	AGCT	2 cut(s)	23, 78
Ama87I	CYCGRG	1 cut(s)	460
AoxI	GGCC	2 cut(s)	28, 457
ApeKI	GCWGC	3 cut(s)	20, 181, 365
ApoI	RAATTY	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	458
AsuHPI	GGTGA	3 cut(s)	345, 400, 422
AvaI	CYCGRG	1 cut(s)	460
BalI	TGGCCA	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	3 cut(s)	32, 193, 352
BfaI	CTAG	2 cut(s)	17, 284
BfmI	CTRYAG	1 cut(s)	79
BisI	GCNGC	4 cut(s)	21, 182, 295, 366
BlsI	GCNGC	4 cut(s)	22, 183, 296, 367
BmeT110I	CYCGRG	1 cut(s)	460
BmgT120I	GGNCC	1 cut(s)	458
BmsI	GCATC	1 cut(s)	415
BpiI	GAAGAC	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	56
BsaAI	YACGTR	1 cut(s)	398
BsaJI	CCNNGG	2 cut(s)	31, 144
Bse1I	ACTGG	1 cut(s)	107
Bse3DI	GCAATG	2 cut(s)	442, 448
BseDI	CCNNGG	2 cut(s)	31, 144
BseGI	GGATG	1 cut(s)	97
BseMI	GCAATG	2 cut(s)	442, 448
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	107
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	3 cut(s)	32, 193, 352
BshFI	GGCC	2 cut(s)	30, 459
BsiHKCI	CYCGRG	1 cut(s)	460
BsnI	GGCC	2 cut(s)	30, 459
BsoBI	CYCGRG	1 cut(s)	460
BspACI	CCGC	4 cut(s)	52, 68, 294, 450
BspANI	GGCC	2 cut(s)	30, 459
BspCNI	CTCAG	1 cut(s)	361
BsrBI	CCGCTC	1 cut(s)	70
BsrDI	GCAATG	2 cut(s)	442, 448
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	31, 144
BssT1I	CCWWGG	2 cut(s)	31, 144
Bst4CI	ACNGT	2 cut(s)	154, 357
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstBAI	YACGTR	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 447, 456
BstNSI	RCATGY	1 cut(s)	336
BstSFI	CTRYAG	1 cut(s)	79
BstV1I	GCAGC	3 cut(s)	32, 193, 352
BstV2I	GAAGAC	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	30, 459
BtsCI	GGATG	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	159, 304
Cac8I	GCNNGC	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	458
Csp6I	GTAC	2 cut(s)	100, 395
CviAII	CATG	2 cut(s)	86, 333
CviJI	RGCY	6 cut(s)	23, 30, 78, 84, 184, 459
CviKI_1	RGCY	6 cut(s)	23, 30, 78, 84, 184, 459
CviQI	GTAC	2 cut(s)	100, 395
DdeI	CTNAG	1 cut(s)	369
EaeI	YGGCCR	1 cut(s)	28
Eco130I	CCWWGG	2 cut(s)	31, 144
Eco57I	CTGAAG	2 cut(s)	216, 450
Eco88I	CYCGRG	1 cut(s)	460
EcoT14I	CCWWGG	2 cut(s)	31, 144
ErhI	CCWWGG	2 cut(s)	31, 144
FaeI	CATG	2 cut(s)	89, 336
FaiI	YATR	3 cut(s)	87, 117, 334
FatI	CATG	2 cut(s)	85, 332
Fnu4HI	GCNGC	4 cut(s)	21, 182, 295, 366
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	4 cut(s)	21, 182, 295, 366
FspBI	CTAG	2 cut(s)	17, 284
GluI	GCNGC	4 cut(s)	21, 182, 295, 366
HaeIII	GGCC	2 cut(s)	30, 459
Hin1II	CATG	2 cut(s)	89, 336
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	3 cut(s)	345, 400, 422
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	361
HpyAV	CCTTC	3 cut(s)	166, 316, 425
HpyCH4III	ACNGT	2 cut(s)	154, 357
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	2 cut(s)	336, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 447, 456
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	2 cut(s)	89, 336
LpnPI	CCDG	3 cut(s)	88, 95, 405
Lsp1109I	GCAGC	3 cut(s)	32, 193, 352
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	2 cut(s)	17, 284
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	1 cut(s)	351
MbiI	CCGCTC	1 cut(s)	70
MboII	GAAGA	1 cut(s)	202
MlsI	TGGCCA	1 cut(s)	30
MluCI	AATT	4 cut(s)	161, 238, 263, 317
MluNI	TGGCCA	1 cut(s)	30
MnlI	CCTC	9 cut(s)	59, 82, 112, 162, 199, 205, 264, 280, 305
Mox20I	TGGCCA	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	30
MseI	TTAA	2 cut(s)	164, 275
MslI	CAYNNNNRTG	2 cut(s)	90, 331
Msp20I	TGGCCA	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	23
MwoI	GCNNNNNNNGC	3 cut(s)	425, 447, 456
NlaIII	CATG	2 cut(s)	89, 336
NmuCI	GTSAC	1 cut(s)	351
NspI	RCATGY	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	22, 183, 296, 367
Ppu21I	YACGTR	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	458
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	2 cut(s)	101, 396
RsaNI	GTAC	2 cut(s)	100, 395
RseI	CAYNNNNRTG	2 cut(s)	90, 331
SaqAI	TTAA	2 cut(s)	164, 275
SatI	GCNGC	4 cut(s)	21, 182, 295, 366
Sau96I	GGNCC	1 cut(s)	458
SetI	ASST	8 cut(s)	25, 51, 80, 101, 123, 210, 275, 400
SfaNI	GCATC	1 cut(s)	415
SfcI	CTRYAG	1 cut(s)	79
SmiMI	CAYNNNNRTG	2 cut(s)	90, 331
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	4 cut(s)	161, 238, 263, 317
SsiI	CCGC	4 cut(s)	52, 68, 294, 450
SspMI	CTAG	2 cut(s)	17, 284
StyI	CCWWGG	2 cut(s)	31, 144
TaaI	ACNGT	2 cut(s)	154, 357
TaiI	ACGT	1 cut(s)	400
TasI	AATT	4 cut(s)	161, 238, 263, 317
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	2 cut(s)	164, 275
Tru9I	TTAA	2 cut(s)	164, 275
TscAI	CASTG	2 cut(s)	159, 304
TseFI	GTSAC	1 cut(s)	351
TseI	GCWGC	3 cut(s)	20, 181, 365
Tsp45I	GTSAC	1 cut(s)	351
TspDTI	ATGAA	1 cut(s)	203
TspRI	CASTG	2 cut(s)	159, 304
XapI	RAATTY	1 cut(s)	238
XceI	RCATGY	1 cut(s)	336
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XspI	CTAG	2 cut(s)	17, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.