Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Unknown

Orthogroup ID

OG0005906

Physical Location & Seq

Genomic Coordinates Reverse (-)

873623 .. 874230

Gene Structure 608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000192

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAAAGAACAGGTTCAAAATCACGATCAATTCCTTTTTCATTTCAAATCCGGCAGCAGCTGCAGCCGTACTCTGCTCCAGTGCATGCGATGAACTACAATGCGGCGCACCCCTGCGTTAGCTACGGCGCGGCTCGCTATGCTACACAACCTGTTTATTCTCAGACGCACACGTATGCACATTGGGGTTTGGGGGGAACTGAGGTTGAGCCGCCATCGTATCATTTTGAAAACCATCCGCCACCGCCGTCCCATCCACCACAAGCCAACTATCCACCACATCCCTACTATTCCGCCGATTCCGATACCTTCGCCTTGTTCAGTGATGAAAATAAAAATGGGTGCCATATTATTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

120

Amino Acids

13.4

Weight (kDa)

6.74

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09921 FvH4_6g06500
malus_domestica	MD04G1201300.v1.1 MD12G1213700.v1.1
prunus_persica	Prupe.6G321400_v2.0.a1 Prupe.6G321400_v2.0.a1
pyrus_communis	pycom04g17730 pycom12g19960
rosa_chinensis	RchiOBHm_Chr3g0455651
rosa_laevigata	RLG00000000137 RLG00000000144 RLG00000000152 RLG00000000192 RLG00000000428 RLG00000000490 RLG00000025343
rosa_multiflora	Rmu_sc0002883.1_g000006
rosa_roxburghii	Rroxscaffold_6G00423630 Rroxscaffold_6G00424130
rosa_rugosa	Rorug03G0009000
rosa_samantha	Rh3AG068500 Rh3BG071000 Rh3CG069300 Rh3DG070900 Rh5BG485600 Rh6CG178600 Rh6DG170400
rosa_wichuraiana	Rw3G005490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	342
AccII	CGCG	1 cut(s)	131
AciI	CCGC	6 cut(s)	104, 131, 212, 239, 245, 294
AfaI	GTAC	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	3 cut(s)	18, 47, 230
AluBI	AGCT	2 cut(s)	61, 123
AluI	AGCT	2 cut(s)	61, 123
AlwNI	CAGNNNCTG	1 cut(s)	61
ApeKI	GCWGC	4 cut(s)	55, 58, 61, 64
Asp700I	GAANNNNTTC	1 cut(s)	13
AspLEI	GCGC	2 cut(s)	109, 131
BanI	GGYRCC	1 cut(s)	342
BbvI	GCAGC	4 cut(s)	48, 67, 70, 76
BccI	CCATC	3 cut(s)	223, 243, 261
BceAI	ACGGC	3 cut(s)	52, 142, 232
BfmI	CTRYAG	1 cut(s)	62
BisI	GCNGC	7 cut(s)	56, 59, 62, 65, 105, 132, 212
BlsI	GCNGC	7 cut(s)	57, 60, 63, 66, 106, 133, 213
BmiI	GGNNCC	1 cut(s)	344
BpmI	CTGGAG	1 cut(s)	63
BsaAI	YACGTR	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	80
BseGI	GGATG	3 cut(s)	235, 253, 280
BseMII	CTCAG	2 cut(s)	176, 192
BseNI	ACTGG	1 cut(s)	80
BseXI	GCAGC	4 cut(s)	48, 67, 70, 76
Bsh1236I	CGCG	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	26
BspACI	CCGC	6 cut(s)	104, 131, 212, 239, 245, 294
BspCNI	CTCAG	2 cut(s)	175, 193
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	344
BspMAI	CTGCAG	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	80
BssMI	GATC	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	61
BstBAI	YACGTR	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	87, 136
BstDEI	CTNAG	2 cut(s)	162, 201
BstF5I	GGATG	3 cut(s)	235, 253, 280
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	2 cut(s)	109, 131
BstKTI	GATC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 64, 135, 140
BstNSI	RCATGY	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	62
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	4 cut(s)	48, 67, 70, 76
BtgZI	GCGATG	1 cut(s)	104
BtsCI	GGATG	3 cut(s)	235, 253, 280
BtsIMutI	CAGTG	2 cut(s)	87, 328
Cac8I	GCNNGC	2 cut(s)	87, 136
CaiI	CAGNNNCTG	1 cut(s)	61
CfoI	GCGC	2 cut(s)	109, 131
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	6 cut(s)	61, 67, 123, 134, 211, 266
CviKI_1	RGCY	6 cut(s)	61, 67, 123, 134, 211, 266
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	2 cut(s)	162, 201
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
EciI	GGCGGA	2 cut(s)	228, 283
FaeI	CATG	1 cut(s)	89
FaiI	YATR	4 cut(s)	87, 141, 177, 348
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	7 cut(s)	56, 59, 62, 65, 105, 132, 212
FokI	GGATG	3 cut(s)	222, 240, 267
Fsp4HI	GCNGC	7 cut(s)	56, 59, 62, 65, 105, 132, 212
GlaI	GCGC	2 cut(s)	108, 130
GluI	GCNGC	7 cut(s)	56, 59, 62, 65, 105, 132, 212
GsuI	CTGGAG	1 cut(s)	63
HapII	CCGG	1 cut(s)	52
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	2 cut(s)	109, 131
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	2 cut(s)	107, 129
HinP1I	GCGC	2 cut(s)	107, 129
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	1 cut(s)	52
Hpy188I	TCNGA	2 cut(s)	165, 304
Hpy188III	TCNNGA	1 cut(s)	24
HpyAV	CCTTC	1 cut(s)	319
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	3 cut(s)	64, 85, 179
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 64, 135, 140
HpyF3I	CTNAG	2 cut(s)	162, 201
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	2 cut(s)	107, 129
Kzo9I	GATC	1 cut(s)	26
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	4 cut(s)	65, 93, 127, 165
Lsp1109I	GCAGC	4 cut(s)	48, 67, 70, 76
MaeII	ACGT	1 cut(s)	173
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MluCI	AATT	1 cut(s)	30
MnlI	CCTC	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	13
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	1 cut(s)	52
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	61, 64, 135, 140
NdeII	GATC	1 cut(s)	26
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	7 cut(s)	57, 60, 63, 66, 106, 133, 213
Ppu21I	YACGTR	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	66
PstNI	CAGNNNCTG	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	174
SatI	GCNGC	7 cut(s)	56, 59, 62, 65, 105, 132, 212
Sau3AI	GATC	1 cut(s)	26
SetI	ASST	8 cut(s)	16, 63, 125, 154, 176, 207, 311, 359
SfcI	CTRYAG	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	174
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	6 cut(s)	104, 131, 212, 239, 245, 294
TaiI	ACGT	1 cut(s)	176
TasI	AATT	1 cut(s)	30
TauI	GCSGC	3 cut(s)	107, 134, 214
TfiI	GAWTC	1 cut(s)	299
TscAI	CASTG	2 cut(s)	87, 328
TseI	GCWGC	4 cut(s)	55, 58, 61, 64
TspDTI	ATGAA	3 cut(s)	30, 107, 342
TspRI	CASTG	2 cut(s)	87, 328
XceI	RCATGY	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.