Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005906

Physical Location & Seq

Genomic Coordinates Forward (+)

1191792 .. 1192659

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000490

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGAAAGAACAGGTTCAAAATCACGATCAATTCCTTTTTCATTTCAAATCCGGCAGCAGCTGCAGCCGTACTCTGCTCCAGTGCATGCGATGAACTACAATGCGGCGCACCCCTGCGTTAGCTACGGCGCGGCTCGCTATGCTACACAACCTGTTTATTCTCAGACGCACACGTATGCACATTGGGGTTTGGGGGGAACTGAGGTTGAGCCGCCATCGTATCATTTTGAAAACCATCCGCCACCGCCGTCCCATCCACCACAAGCCAACTATCCACCACATCCCTACTATTCCGCCGATTCCGATACCTTCGCCTTGTTCAACCTGAAAGCACGAAGTAAACGCTCACATGCATACATTATTACTGGGAAAGCCAGATACATCCATGTCTGCGATGACCATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

136

Amino Acids

15.26

Weight (kDa)

8.89

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09921 FvH4_6g06500
malus_domestica	MD04G1201300.v1.1 MD12G1213700.v1.1
prunus_persica	Prupe.6G321400_v2.0.a1 Prupe.6G321400_v2.0.a1
pyrus_communis	pycom04g17730 pycom12g19960
rosa_chinensis	RchiOBHm_Chr3g0455651
rosa_laevigata	RLG00000000137 RLG00000000144 RLG00000000152 RLG00000000192 RLG00000000428 RLG00000000490 RLG00000025343
rosa_multiflora	Rmu_sc0002883.1_g000006
rosa_roxburghii	Rroxscaffold_6G00423630 Rroxscaffold_6G00424130
rosa_rugosa	Rorug03G0009000
rosa_samantha	Rh3AG068500 Rh3BG071000 Rh3CG069300 Rh3DG070900 Rh5BG485600 Rh6CG178600 Rh6DG170400
rosa_wichuraiana	Rw3G005490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	131
AciI	CCGC	6 cut(s)	104, 131, 212, 239, 245, 294
AfaI	GTAC	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	4 cut(s)	18, 47, 230, 322
AluBI	AGCT	2 cut(s)	61, 123
AluI	AGCT	2 cut(s)	61, 123
AlwNI	CAGNNNCTG	1 cut(s)	61
ApeKI	GCWGC	4 cut(s)	55, 58, 61, 64
Asp700I	GAANNNNTTC	1 cut(s)	13
AspLEI	GCGC	2 cut(s)	109, 131
BbvI	GCAGC	4 cut(s)	48, 67, 70, 76
BccI	CCATC	3 cut(s)	223, 243, 261
BceAI	ACGGC	3 cut(s)	52, 142, 232
BfmI	CTRYAG	1 cut(s)	62
BisI	GCNGC	7 cut(s)	56, 59, 62, 65, 105, 132, 212
BlsI	GCNGC	7 cut(s)	57, 60, 63, 66, 106, 133, 213
BmrI	ACTGGG	1 cut(s)	375
BmuI	ACTGGG	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	63
BsaAI	YACGTR	1 cut(s)	174
Bse1I	ACTGG	2 cut(s)	80, 370
BseGI	GGATG	4 cut(s)	235, 253, 280, 381
BseMII	CTCAG	2 cut(s)	176, 192
BseNI	ACTGG	2 cut(s)	80, 370
BseXI	GCAGC	4 cut(s)	48, 67, 70, 76
Bsh1236I	CGCG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	26
BspACI	CCGC	6 cut(s)	104, 131, 212, 239, 245, 294
BspCNI	CTCAG	2 cut(s)	175, 193
BspFNI	CGCG	1 cut(s)	131
BspHI	TCATGA	1 cut(s)	404
BspMAI	CTGCAG	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	80, 370
BssMI	GATC	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	61
BstBAI	YACGTR	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	87, 136
BstDEI	CTNAG	2 cut(s)	162, 201
BstF5I	GGATG	4 cut(s)	235, 253, 280, 381
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	2 cut(s)	109, 131
BstKTI	GATC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 64, 135, 140
BstNSI	RCATGY	2 cut(s)	89, 353
BstSFI	CTRYAG	1 cut(s)	62
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	4 cut(s)	48, 67, 70, 76
BtgZI	GCGATG	1 cut(s)	104
BtsCI	GGATG	4 cut(s)	235, 253, 280, 381
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	87, 136
CaiI	CAGNNNCTG	1 cut(s)	61
CciI	TCATGA	1 cut(s)	404
CfoI	GCGC	2 cut(s)	109, 131
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	4 cut(s)	86, 350, 386, 405
CviJI	RGCY	7 cut(s)	61, 67, 123, 134, 211, 266, 374
CviKI_1	RGCY	7 cut(s)	61, 67, 123, 134, 211, 266, 374
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	2 cut(s)	162, 201
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
EciI	GGCGGA	2 cut(s)	228, 283
EcoT22I	ATGCAT	1 cut(s)	355
FaeI	CATG	4 cut(s)	89, 353, 389, 408
FaiI	YATR	7 cut(s)	87, 141, 177, 351, 355, 387, 406
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	4 cut(s)	85, 349, 385, 404
Fnu4HI	GCNGC	7 cut(s)	56, 59, 62, 65, 105, 132, 212
FokI	GGATG	4 cut(s)	222, 240, 267, 368
Fsp4HI	GCNGC	7 cut(s)	56, 59, 62, 65, 105, 132, 212
GlaI	GCGC	2 cut(s)	108, 130
GluI	GCNGC	7 cut(s)	56, 59, 62, 65, 105, 132, 212
GsuI	CTGGAG	1 cut(s)	63
HapII	CCGG	1 cut(s)	52
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	2 cut(s)	109, 131
Hin1II	CATG	4 cut(s)	89, 353, 389, 408
Hin6I	GCGC	2 cut(s)	107, 129
HinP1I	GCGC	2 cut(s)	107, 129
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	2 cut(s)	165, 304
Hpy188III	TCNNGA	2 cut(s)	24, 405
Hpy8I	GTNNAC	1 cut(s)	341
HpyAV	CCTTC	1 cut(s)	319
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	4 cut(s)	64, 85, 179, 353
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 64, 135, 140
HpyF3I	CTNAG	2 cut(s)	162, 201
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	4 cut(s)	89, 353, 389, 408
HspAI	GCGC	2 cut(s)	107, 129
Kzo9I	GATC	1 cut(s)	26
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	7 cut(s)	65, 93, 127, 165, 338, 351, 388
Lsp1109I	GCAGC	4 cut(s)	48, 67, 70, 76
MaeII	ACGT	1 cut(s)	173
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MluCI	AATT	1 cut(s)	30
MnlI	CCTC	1 cut(s)	196
Mph1103I	ATGCAT	1 cut(s)	355
MroXI	GAANNNNTTC	1 cut(s)	13
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	1 cut(s)	52
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	61, 64, 135, 140
NdeII	GATC	1 cut(s)	26
NlaIII	CATG	4 cut(s)	89, 353, 389, 408
NsiI	ATGCAT	1 cut(s)	355
NspI	RCATGY	2 cut(s)	89, 353
PaeI	GCATGC	1 cut(s)	89
PagI	TCATGA	1 cut(s)	404
PdmI	GAANNNNTTC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	7 cut(s)	57, 60, 63, 66, 106, 133, 213
Ppu21I	YACGTR	1 cut(s)	174
PstI	CTGCAG	1 cut(s)	66
PstNI	CAGNNNCTG	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	174
SatI	GCNGC	7 cut(s)	56, 59, 62, 65, 105, 132, 212
Sau3AI	GATC	1 cut(s)	26
SetI	ASST	8 cut(s)	16, 63, 125, 154, 176, 207, 311, 327
SfcI	CTRYAG	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	174
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	6 cut(s)	104, 131, 212, 239, 245, 294
TaiI	ACGT	1 cut(s)	176
TasI	AATT	1 cut(s)	30
TauI	GCSGC	3 cut(s)	107, 134, 214
TfiI	GAWTC	1 cut(s)	299
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	4 cut(s)	55, 58, 61, 64
TspDTI	ATGAA	3 cut(s)	30, 107, 393
TspRI	CASTG	1 cut(s)	87
XceI	RCATGY	2 cut(s)	89, 353
XmnI	GAANNNNTTC	1 cut(s)	13
Zsp2I	ATGCAT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.