MD04G1201300.v1.1

Heavy-metal-associated domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
28750384 .. 28752832
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1201300.v1.1.491

Sequence Viewer

Length: 1323 bp
ATGGCAAAAGCTGAAGCTAAGTCTGAAGCCAAACCAGAAAAACCGAAAGAAATTGAAGAAGTTTCGGTACCCACTCTCAAATACAAAATTTGGGTTTTGAAAGTCCCTATACACTGTGGGGGCTGCAAGAAAAAAGTCGCAAAAATCTTGAAAAAAATAGATGGGGTTTACAAAACAGAGTTCGATGGGAGCTTCGGGAAGGAAAACAAAGTGACAGTGACTGGGAACGTGGAGCCGGAGATTTTGATCAGGAAGCTGGCCAAGGGAGGGAAACATGCAGAGCTGTGGCTTGATCAGAAGGCTAACAACAGCAATAATTCAAACGACAAGAAGAAAAAAAAGGGGAAGAATAAGGAGAGACAGCAAGGGGAAAACGCCAAAGGGTCGCAGGACGGTAACCATGGCGGACCTGGCTGCGGCGGCAGTGGTGATAAAGAAAGGGAGGCGGTTAAGGCTGAAGTTGTTCAAGTCCAGGATAATGGTGGTAAGAAGAAAAATGAGGGTGCTGGTGGCGCGGGTGGGAGTAAGAGCGATGAGGGGGCGAATGCTGTGAAAGTGATTGAGGGCGGTGGTGCACCGGCAAAAAAGGGCGCGGGTGGCGGTGGAAAAGGCAAAGAGGTGAAGGTTGAAGTGGTGAGGCAGGGGAAGGCTGTGAACGTGTCAGGACAGCCGGATGCGGCGGAGAAGTGTTTTGGTGGGGACGACGATGACGATGACAGTGACTGTGCGGTTGAGAAAAGTGGAGGCAGCGGTGGAGGCCGCGACGGTGCTGGCGGCAGTGGAACCAAGAAGAAAAAGAAGGGGCAAAAGGGGAATGCAAATGCTGGGGATTCGGATGAGAATGAGCAATGTGGTGATGCTGCTCCAGCACGCACTGGATTACCGCCTAATCATGGCAATGTGCCACGTGGTCCTCCCGTGCCTTACATGTTTAATGGGTTCAATGCGCCTCGCATGCCTCCATATGGTACTCAATTCCCAAACTTTGCTCCGGCTCCGGCACCAGCTCCAGCCAATCACATGGCTCCACATCAGCTGCTGTATGAGTACCAGTACCCCAGGCATCCAATCCAAGCTATGAACTTCAATACGGCCTACCCCGCCAGTAGCTACGGTGCATCCCAGTATGCTGCACCACCACCTCACGCACATTCTTACTCTTATGTGTCTCAAAGTGTGGCAGCTGAGACCGAGCCCCGGTCCTATCATTCGGACTCATATCCGCAGTACCACCCGTCTCAGCCGGTATATAATCCGCCGCAGCAGTCCGATTCCTTCGTGCTGTTCAGCGACGAGAATCCGAACGGGTGCACCATTATGTGA

Protein Analysis

441

Amino Acids

46.38

Weight (kDa)

8.83

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 33 - 91 1.3e-09 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 67
AccB1I GGYRCC 2 cut(s) 67, 1000
AccII CGCG 3 cut(s) 515, 593, 762
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 1 cut(s) 87
AcuI CTGAAG 3 cut(s) 33, 45, 477
AcvI CACGTG 1 cut(s) 908
AfaI GTAC 5 cut(s) 69, 970, 1049, 1055, 1229
AfiI CCNNNNNNNGG 5 cut(s) 267, 416, 893, 965, 1197
AflIII ACRYGT 2 cut(s) 657, 927
AgsI TTSAA 8 cut(s) 56, 100, 151, 321, 467, 629, 943, 1087
AjnI CCWGG 3 cut(s) 409, 471, 1058
Alw21I GWGCWC 2 cut(s) 577, 1313
Alw26I GTCTC 4 cut(s) 352, 1173, 1181, 1242
Alw44I GTGCAC 2 cut(s) 573, 1309
AlwNI CAGNNNCTG 3 cut(s) 221, 723, 1039
AoxI GGCC 3 cut(s) 258, 757, 1092
ApaLI GTGCAC 2 cut(s) 573, 1309
ApeKI GCWGC 8 cut(s) 123, 414, 747, 860, 1036, 1130, 1181, 1261
ApoI RAATTY 1 cut(s) 87
Asp700I GAANNNNTTC 1 cut(s) 462
Asp718I GGTACC 1 cut(s) 67
AspLEI GCGC 3 cut(s) 515, 593, 949
AspS9I GGNCC 3 cut(s) 407, 911, 1200
AsuC2I CCSGG 1 cut(s) 1198
AsuHPI GGTGA 4 cut(s) 440, 631, 646, 866
AvaII GGWCC 3 cut(s) 407, 911, 1200
BaeGI GKGCMC 2 cut(s) 577, 1313
BalI TGGCCA 1 cut(s) 260
BanI GGYRCC 2 cut(s) 67, 1000
BanII GRGCYC 1 cut(s) 1197
BarI GAAGNNNNNNTAC 2 cut(s) 51, 83
BbrPI CACGTG 1 cut(s) 908
Bbv12I GWGCWC 2 cut(s) 577, 1313
BbvI GCAGC 8 cut(s) 110, 401, 759, 847, 1023, 1117, 1193, 1273
BccI CCATC 2 cut(s) 155, 179
BceAI ACGGC 1 cut(s) 1107
BciT130I CCWGG 3 cut(s) 411, 473, 1060
BclI TGATCA 2 cut(s) 246, 292
BcnI CCSGG 1 cut(s) 1198
BcoDI GTCTC 4 cut(s) 352, 1173, 1181, 1242
Bme1390I CCNGG 4 cut(s) 411, 473, 1060, 1198
Bme18I GGWCC 3 cut(s) 407, 911, 1200
BmgT120I GGNCC 3 cut(s) 407, 911, 1200
BmiI GGNNCC 6 cut(s) 69, 234, 784, 996, 1002, 1026
BmrFI CCNGG 4 cut(s) 411, 473, 1060, 1198
BmrI ACTGGG 2 cut(s) 231, 1117
BmsI GCATC 4 cut(s) 664, 847, 1072, 1127
BmuI ACTGGG 2 cut(s) 231, 1117
BpmI CTGGAG 2 cut(s) 849, 993
BpuMI CCSGG 1 cut(s) 1198
BsaAI YACGTR 1 cut(s) 908
BsaBI GATNNNNATC 1 cut(s) 245
BsaI GGTCTC 1 cut(s) 1181
BsaJI CCNNGG 4 cut(s) 261, 400, 1058, 1196
Bsc4I CCNNNNNNNGG 5 cut(s) 267, 416, 893, 965, 1197
Bse118I RCCGGY 2 cut(s) 577, 1243
Bse1I ACTGG 5 cut(s) 226, 880, 1051, 1104, 1123
Bse3DI GCAATG 2 cut(s) 854, 904
Bse8I GATNNNNATC 1 cut(s) 245
BseBI CCWGG 3 cut(s) 411, 473, 1060
BseDI CCNNGG 4 cut(s) 261, 400, 1058, 1196
BseGI GGATG 4 cut(s) 679, 841, 1063, 1118
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 5 cut(s) 267, 416, 893, 965, 1197
BseMI GCAATG 2 cut(s) 854, 904
BseMII CTCAG 2 cut(s) 1176, 1253
BseNI ACTGG 5 cut(s) 226, 880, 1051, 1104, 1123
BseSI GKGCMC 2 cut(s) 577, 1313
BseXI GCAGC 8 cut(s) 110, 401, 759, 847, 1023, 1117, 1193, 1273
BseYI CCCAGC 1 cut(s) 824
BsgI GTGCAG 1 cut(s) 1116
Bsh1236I CGCG 3 cut(s) 515, 593, 762
BshFI GGCC 3 cut(s) 260, 759, 1094
BshNI GGYRCC 2 cut(s) 67, 1000
BsiHKAI GWGCWC 2 cut(s) 577, 1313
BsiSI CCGG 7 cut(s) 236, 578, 671, 992, 998, 1198, 1244
BslFI GGGAC 2 cut(s) 89, 713
BslI CCNNNNNNNGG 5 cut(s) 267, 416, 893, 965, 1197
BsmAI GTCTC 4 cut(s) 352, 1173, 1181, 1242
BsmBI CGTCTC 1 cut(s) 1242
BsmFI GGGAC 2 cut(s) 89, 713
BsmI GAATGC 2 cut(s) 550, 820
BsnI GGCC 3 cut(s) 260, 759, 1094
Bso31I GGTCTC 1 cut(s) 1181
Bsp1286I GDGCHC 3 cut(s) 577, 1197, 1313
Bsp143I GATC 2 cut(s) 246, 292
Bsp19I CCATGG 1 cut(s) 400
BspANI GGCC 3 cut(s) 260, 759, 1094
BspCNI CTCAG 2 cut(s) 1177, 1252
BspFNI CGCG 3 cut(s) 515, 593, 762
BspLI GGNNCC 6 cut(s) 69, 234, 784, 996, 1002, 1026
BspT107I GGYRCC 2 cut(s) 67, 1000
BspTNI GGTCTC 1 cut(s) 1181
BsrDI GCAATG 2 cut(s) 854, 904
BsrFI RCCGGY 2 cut(s) 577, 1243
BsrI ACTGG 5 cut(s) 226, 880, 1051, 1104, 1123
BssAI RCCGGY 2 cut(s) 577, 1243
BssECI CCNNGG 4 cut(s) 261, 400, 1058, 1196
BssMI GATC 2 cut(s) 246, 292
BssT1I CCWWGG 2 cut(s) 261, 400
Bst2UI CCWGG 3 cut(s) 411, 473, 1060
Bst4CI ACNGT 7 cut(s) 116, 217, 395, 719, 725, 767, 1115
BstBAI YACGTR 1 cut(s) 908
BstC8I GCNNGC 4 cut(s) 258, 772, 871, 956
BstDEI CTNAG 3 cut(s) 18, 1185, 1239
BstDSI CCRYGG 1 cut(s) 400
BstEII GGTNACC 1 cut(s) 395
BstF5I GGATG 4 cut(s) 679, 841, 1063, 1118
BstFNI CGCG 3 cut(s) 515, 593, 762
BstHHI GCGC 3 cut(s) 515, 593, 949
BstKTI GATC 2 cut(s) 249, 295
BstMAI GTCTC 4 cut(s) 352, 1173, 1181, 1242
BstMBI GATC 2 cut(s) 246, 292
BstMWI GCNNNNNNNGC 9 cut(s) 411, 420, 452, 512, 597, 756, 866, 955, 1100
BstNI CCWGG 3 cut(s) 411, 473, 1060
BstNSI RCATGY 3 cut(s) 278, 931, 958
BstPI GGTNACC 1 cut(s) 395
BstSCI CCNGG 4 cut(s) 409, 471, 1058, 1196
BstSLI GKGCMC 2 cut(s) 577, 1313
BstUI CGCG 3 cut(s) 515, 593, 762
BstV1I GCAGC 8 cut(s) 110, 401, 759, 847, 1023, 1117, 1193, 1273
BstXI CCANNNNNNTGG 2 cut(s) 479, 1021
BsuRI GGCC 3 cut(s) 260, 759, 1094
BtgI CCRYGG 1 cut(s) 400
BtgZI GCGATG 1 cut(s) 546
BtsCI GGATG 4 cut(s) 679, 841, 1063, 1118
BtsI GCAGTG 2 cut(s) 430, 784
BtsIMutI CAGTG 6 cut(s) 112, 222, 430, 724, 784, 873
Cac8I GCNNGC 4 cut(s) 258, 772, 871, 956
CaiI CAGNNNCTG 3 cut(s) 221, 723, 1039
CfoI GCGC 3 cut(s) 515, 593, 949
Cfr10I RCCGGY 2 cut(s) 577, 1243
Cfr13I GGNCC 3 cut(s) 407, 911, 1200
Csp6I GTAC 5 cut(s) 68, 969, 1048, 1054, 1228
CviAII CATG 6 cut(s) 275, 401, 893, 928, 955, 1021
CviQI GTAC 5 cut(s) 68, 969, 1048, 1054, 1228
DdeI CTNAG 3 cut(s) 18, 1185, 1239
DpnI GATC 2 cut(s) 248, 294
DpnII GATC 2 cut(s) 246, 292
EaeI YGGCCR 1 cut(s) 258
EciI GGCGGA 3 cut(s) 420, 695, 1245
Eco130I CCWWGG 2 cut(s) 261, 400
Eco24I GRGCYC 1 cut(s) 1197
Eco31I GGTCTC 1 cut(s) 1181
Eco47I GGWCC 3 cut(s) 407, 911, 1200
Eco57I CTGAAG 3 cut(s) 33, 45, 477
Eco72I CACGTG 1 cut(s) 908
Eco91I GGTNACC 1 cut(s) 395
EcoO65I GGTNACC 1 cut(s) 395
EcoRII CCWGG 3 cut(s) 409, 471, 1058
EcoT14I CCWWGG 2 cut(s) 261, 400
EcoT38I GRGCYC 1 cut(s) 1197
ErhI CCWWGG 2 cut(s) 261, 400
Esp3I CGTCTC 1 cut(s) 1242
FaeI CATG 6 cut(s) 278, 404, 896, 931, 958, 1024
FaqI GGGAC 2 cut(s) 89, 713
FatI CATG 6 cut(s) 274, 400, 892, 927, 954, 1020
FauI CCCGC 3 cut(s) 508, 586, 1108
FauNDI CATATG 1 cut(s) 964
FbaI TGATCA 2 cut(s) 246, 292
FokI GGATG 4 cut(s) 686, 848, 1050, 1105
FriOI GRGCYC 1 cut(s) 1197
GlaI GCGC 3 cut(s) 514, 592, 948
GsaI CCCAGC 1 cut(s) 828
GsuI CTGGAG 2 cut(s) 849, 993
HaeIII GGCC 3 cut(s) 260, 759, 1094
HapII CCGG 7 cut(s) 236, 578, 671, 992, 998, 1198, 1244
HhaI GCGC 3 cut(s) 515, 593, 949
Hin1II CATG 6 cut(s) 278, 404, 896, 931, 958, 1024
Hin6I GCGC 3 cut(s) 513, 591, 947
HinP1I GCGC 3 cut(s) 513, 591, 947
HinfI GANTC 4 cut(s) 830, 1214, 1271, 1297
HpaII CCGG 7 cut(s) 236, 578, 671, 992, 998, 1198, 1244
HphI GGTGA 4 cut(s) 440, 631, 646, 866
Hpy166II GTNNAC 4 cut(s) 169, 575, 655, 1311
Hpy188I TCNGA 6 cut(s) 25, 297, 835, 1213, 1270, 1302
Hpy188III TCNNGA 4 cut(s) 148, 196, 250, 663
Hpy8I GTNNAC 4 cut(s) 169, 575, 655, 1311
Hpy99I CGWCG 3 cut(s) 707, 767, 1295
HpyAV CCTTC 6 cut(s) 193, 292, 616, 640, 793, 1285
HpyCH4III ACNGT 7 cut(s) 116, 217, 395, 719, 725, 767, 1115
HpyCH4IV ACGT 3 cut(s) 228, 657, 907
HpyCH4V TGCA 7 cut(s) 126, 278, 575, 818, 1118, 1133, 1311
HpyF10VI GCNNNNNNNGC 9 cut(s) 411, 420, 452, 512, 597, 756, 866, 955, 1100
HpyF3I CTNAG 3 cut(s) 18, 1185, 1239
HpySE526I ACGT 3 cut(s) 228, 657, 907
Hsp92II CATG 6 cut(s) 278, 404, 896, 931, 958, 1024
HspAI GCGC 3 cut(s) 513, 591, 947
KpnI GGTACC 1 cut(s) 71
Ksp22I TGATCA 2 cut(s) 246, 292
Kzo9I GATC 2 cut(s) 246, 292
LmnI GCTCC 7 cut(s) 189, 232, 868, 994, 1000, 1012, 1030
Lsp1109I GCAGC 8 cut(s) 110, 401, 759, 847, 1023, 1117, 1193, 1273
LweI GCATC 4 cut(s) 664, 847, 1072, 1127
MaeII ACGT 3 cut(s) 228, 657, 907
MaeIII GTNAC 4 cut(s) 211, 217, 395, 719
MalI GATC 2 cut(s) 248, 294
MboI GATC 2 cut(s) 246, 292
MboII GAAGA 5 cut(s) 68, 343, 358, 502, 802
MhlI GDGCHC 3 cut(s) 577, 1197, 1313
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 4 cut(s) 51, 87, 316, 974
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 1 cut(s) 1208
Mox20I TGGCCA 1 cut(s) 260
MroXI GAANNNNTTC 1 cut(s) 462
MscI TGGCCA 1 cut(s) 260
MseI TTAA 2 cut(s) 450, 933
MslI CAYNNNNRTG 2 cut(s) 897, 1316
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 3 cut(s) 750, 1036, 1184
MspI CCGG 7 cut(s) 236, 578, 671, 992, 998, 1198, 1244
MspR9I CCNGG 4 cut(s) 411, 473, 1060, 1198
Mva1269I GAATGC 2 cut(s) 550, 820
MvaI CCWGG 3 cut(s) 411, 473, 1060
MvnI CGCG 3 cut(s) 515, 593, 762
MwoI GCNNNNNNNGC 9 cut(s) 411, 420, 452, 512, 597, 756, 866, 955, 1100
NciI CCSGG 1 cut(s) 1198
NcoI CCATGG 1 cut(s) 400
NdeI CATATG 1 cut(s) 964
NdeII GATC 2 cut(s) 246, 292
NlaIII CATG 6 cut(s) 278, 404, 896, 931, 958, 1024
NlaIV GGNNCC 6 cut(s) 69, 234, 784, 996, 1002, 1026
NmuCI GTSAC 3 cut(s) 211, 217, 719
NspI RCATGY 3 cut(s) 278, 931, 958
PaeI GCATGC 1 cut(s) 958
PciI ACATGT 1 cut(s) 927
PcsI WCGNNNNNNNCGW 1 cut(s) 708
PctI GAATGC 2 cut(s) 550, 820
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 3 cut(s) 830, 1271, 1297
PfoI TCCNGGA 1 cut(s) 471
PleI GAGTC 1 cut(s) 1208
PmaCI CACGTG 1 cut(s) 908
PmlI CACGTG 1 cut(s) 908
PpsI GAGTC 1 cut(s) 1208
Ppu21I YACGTR 1 cut(s) 908
PscI ACATGT 1 cut(s) 927
Psp6I CCWGG 3 cut(s) 409, 471, 1058
PspCI CACGTG 1 cut(s) 908
PspEI GGTNACC 1 cut(s) 395
PspFI CCCAGC 1 cut(s) 824
PspGI CCWGG 3 cut(s) 409, 471, 1058
PspN4I GGNNCC 6 cut(s) 69, 234, 784, 996, 1002, 1026
PspPI GGNCC 3 cut(s) 407, 911, 1200
PstNI CAGNNNCTG 3 cut(s) 221, 723, 1039
PvuII CAGCTG 2 cut(s) 1036, 1184
RsaI GTAC 5 cut(s) 69, 970, 1049, 1055, 1229
RsaNI GTAC 5 cut(s) 68, 969, 1048, 1054, 1228
RseI CAYNNNNRTG 2 cut(s) 897, 1316
SaqAI TTAA 2 cut(s) 450, 933
Sau3AI GATC 2 cut(s) 246, 292
Sau96I GGNCC 3 cut(s) 407, 911, 1200
SchI GAGTC 1 cut(s) 1208
ScrFI CCNGG 4 cut(s) 411, 473, 1060, 1198
SduI GDGCHC 3 cut(s) 577, 1197, 1313
SfaNI GCATC 4 cut(s) 664, 847, 1072, 1127
SinI GGWCC 3 cut(s) 407, 911, 1200
SmiMI CAYNNNNRTG 2 cut(s) 897, 1316
SphI GCATGC 1 cut(s) 958
Sse9I AATT 4 cut(s) 51, 87, 316, 974
StyD4I CCNGG 4 cut(s) 409, 471, 1058, 1196
StyI CCWWGG 2 cut(s) 261, 400
TaaI ACNGT 7 cut(s) 116, 217, 395, 719, 725, 767, 1115
TaiI ACGT 3 cut(s) 231, 660, 910
TaqI TCGA 1 cut(s) 183
TaqII GACCGA 1 cut(s) 1205
TasI AATT 4 cut(s) 51, 87, 316, 974
TauI GCSGC 6 cut(s) 420, 423, 680, 762, 777, 1261
TfiI GAWTC 3 cut(s) 830, 1271, 1297
Tru1I TTAA 2 cut(s) 450, 933
Tru9I TTAA 2 cut(s) 450, 933
TscAI CASTG 6 cut(s) 119, 222, 430, 724, 784, 880
TseFI GTSAC 3 cut(s) 211, 217, 719
TseI GCWGC 8 cut(s) 123, 414, 747, 860, 1036, 1130, 1181, 1261
Tsp45I GTSAC 3 cut(s) 211, 217, 719
TspDTI ATGAA 1 cut(s) 1094
TspRI CASTG 6 cut(s) 119, 222, 430, 724, 784, 880
VneI GTGCAC 2 cut(s) 573, 1309
VpaK11BI GGWCC 3 cut(s) 407, 911, 1200
XapI RAATTY 1 cut(s) 87
XceI RCATGY 3 cut(s) 278, 931, 958
XcmI CCANNNNNNNNNTGG 2 cut(s) 407, 479
XmnI GAANNNNTTC 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.