Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005906

Physical Location & Seq

Genomic Coordinates Reverse (-)

77603136 .. 77605585

Gene Structure 2450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG485600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCCTAATGTCCGGAGCCCAATTCAAGTTCCAGCCTATGACGGCCCTCCACCTCAGCAGCAGGGGTATGAGCACCCTTACACAAGGCAGCAGCTGCAGCCGTACTCTGCTCCAGTGCATGCGATGAACTACAATGCGGCGCACCCCTGCGTTAGCTACGGCGCGGCTCGCTATGCTACACAACCTGTTTATTCTCAGACGCACACATATGCAAATTGGGGTTTGGGGGGAACTGAGGTTGAGCCGCCATCGTATCATTTTGAAAACCATCCGCCACAGCCGTCCCATCCACCACAAGCCAACTATCCACCACATCCCTACTATTCCGCCGATTCCGATACCTTCGCCTTGTTCAGTGATGAAAATAAAAATGGGTGCCATATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

129

Amino Acids

14.47

Weight (kDa)

5.91

Isoelectric Point (pI)

65.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09921 FvH4_6g06500
malus_domestica	MD04G1201300.v1.1 MD12G1213700.v1.1
prunus_persica	Prupe.6G321400_v2.0.a1 Prupe.6G321400_v2.0.a1
pyrus_communis	pycom04g17730 pycom12g19960
rosa_chinensis	RchiOBHm_Chr3g0455651
rosa_laevigata	RLG00000000137 RLG00000000144 RLG00000000152 RLG00000000192 RLG00000000428 RLG00000000490 RLG00000025343
rosa_multiflora	Rmu_sc0002883.1_g000006
rosa_roxburghii	Rroxscaffold_6G00423630 Rroxscaffold_6G00424130
rosa_rugosa	Rorug03G0009000
rosa_samantha	Rh3AG068500 Rh3BG071000 Rh3CG069300 Rh3DG070900 Rh5BG485600 Rh6CG178600 Rh6DG170400
rosa_wichuraiana	Rw3G005490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	375
AccII	CGCG	1 cut(s)	164
AccIII	TCCGGA	1 cut(s)	12
AciI	CCGC	5 cut(s)	137, 164, 245, 272, 327
AfaI	GTAC	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	26, 263
AluBI	AGCT	2 cut(s)	94, 156
AluI	AGCT	2 cut(s)	94, 156
Alw21I	GWGCWC	1 cut(s)	75
AlwNI	CAGNNNCTG	1 cut(s)	94
Aor13HI	TCCGGA	1 cut(s)	12
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	5 cut(s)	58, 88, 91, 94, 97
AspLEI	GCGC	2 cut(s)	142, 164
AspS9I	GGNCC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	375
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	75
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	5 cut(s)	70, 81, 100, 103, 109
BccI	CCATC	3 cut(s)	256, 276, 294
BceAI	ACGGC	4 cut(s)	58, 85, 175, 265
BfmI	CTRYAG	1 cut(s)	95
BisI	GCNGC	8 cut(s)	59, 89, 92, 95, 98, 138, 165, 245
BlsI	GCNGC	8 cut(s)	60, 90, 93, 96, 99, 139, 166, 246
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	17, 377
BpmI	CTGGAG	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	113
BseAI	TCCGGA	1 cut(s)	12
BseGI	GGATG	3 cut(s)	268, 286, 313
BseMII	CTCAG	3 cut(s)	68, 209, 225
BseNI	ACTGG	1 cut(s)	113
BseXI	GCAGC	5 cut(s)	70, 81, 100, 103, 109
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	45
BshNI	GGYRCC	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	20, 75
Bsp13I	TCCGGA	1 cut(s)	12
BspACI	CCGC	5 cut(s)	137, 164, 245, 272, 327
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	3 cut(s)	67, 208, 226
BspEI	TCCGGA	1 cut(s)	12
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	2 cut(s)	17, 377
BspMAI	CTGCAG	1 cut(s)	99
BspT107I	GGYRCC	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	113
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	120, 169
BstDEI	CTNAG	3 cut(s)	54, 195, 234
BstF5I	GGATG	3 cut(s)	268, 286, 313
BstFNI	CGCG	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	142, 164
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 97, 168, 173
BstNSI	RCATGY	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	95
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	5 cut(s)	70, 81, 100, 103, 109
BsuRI	GGCC	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	137
BtsCI	GGATG	3 cut(s)	268, 286, 313
BtsIMutI	CAGTG	2 cut(s)	120, 361
Cac8I	GCNNGC	2 cut(s)	120, 169
CaiI	CAGNNNCTG	1 cut(s)	94
CfoI	GCGC	2 cut(s)	142, 164
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	1 cut(s)	119
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	3 cut(s)	54, 195, 234
EciI	GGCGGA	2 cut(s)	261, 316
Eco24I	GRGCYC	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	20
FaeI	CATG	1 cut(s)	122
FaiI	YATR	8 cut(s)	39, 69, 120, 174, 208, 210, 381, 386
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	1 cut(s)	118
FauNDI	CATATG	1 cut(s)	208
Fnu4HI	GCNGC	8 cut(s)	59, 89, 92, 95, 98, 138, 165, 245
FokI	GGATG	3 cut(s)	255, 273, 300
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	8 cut(s)	59, 89, 92, 95, 98, 138, 165, 245
GlaI	GCGC	2 cut(s)	141, 163
GluI	GCNGC	8 cut(s)	59, 89, 92, 95, 98, 138, 165, 245
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	13
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	2 cut(s)	142, 164
Hin1II	CATG	1 cut(s)	122
Hin6I	GCGC	2 cut(s)	140, 162
HinP1I	GCGC	2 cut(s)	140, 162
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	198, 337
Hpy188III	TCNNGA	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	352
HpyCH4V	TGCA	3 cut(s)	97, 118, 212
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 97, 168, 173
HpyF3I	CTNAG	3 cut(s)	54, 195, 234
Hsp92II	CATG	1 cut(s)	122
HspAI	GCGC	2 cut(s)	140, 162
Kpn2I	TCCGGA	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	15, 115
LpnPI	CCDG	6 cut(s)	26, 45, 47, 126, 160, 198
Lsp1109I	GCAGC	5 cut(s)	70, 81, 100, 103, 109
MhlI	GDGCHC	2 cut(s)	20, 75
MluCI	AATT	2 cut(s)	21, 214
MnlI	CCTC	3 cut(s)	57, 63, 229
MroI	TCCGGA	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	1 cut(s)	13
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	4 cut(s)	94, 97, 168, 173
NdeI	CATATG	1 cut(s)	208
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	2 cut(s)	17, 377
NspI	RCATGY	1 cut(s)	122
PaeI	GCATGC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	8 cut(s)	60, 90, 93, 96, 99, 139, 166, 246
PspN4I	GGNNCC	2 cut(s)	17, 377
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	99
PstNI	CAGNNNCTG	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	94
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	207
SatI	GCNGC	8 cut(s)	59, 89, 92, 95, 98, 138, 165, 245
Sau96I	GGNCC	1 cut(s)	44
SduI	GDGCHC	2 cut(s)	20, 75
SetI	ASST	6 cut(s)	55, 96, 158, 187, 240, 344
SfcI	CTRYAG	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	207
SphI	GCATGC	1 cut(s)	122
Sse9I	AATT	2 cut(s)	21, 214
SsiI	CCGC	5 cut(s)	137, 164, 245, 272, 327
TasI	AATT	2 cut(s)	21, 214
TauI	GCSGC	3 cut(s)	140, 167, 247
TfiI	GAWTC	1 cut(s)	332
TscAI	CASTG	2 cut(s)	120, 361
TseI	GCWGC	5 cut(s)	58, 88, 91, 94, 97
TspDTI	ATGAA	2 cut(s)	140, 375
TspRI	CASTG	2 cut(s)	120, 361
XceI	RCATGY	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.