Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005906

Physical Location & Seq

Genomic Coordinates Reverse (-)

28408572 .. 28410813

Gene Structure 2242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G321400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGCAACAACAACTGAACCCAAGGCAGAAGCCAAAGCTGAACCAAAAGAAATTGAAGAAATTTCTCAGCCTCCTCTAAAATACAAGACATGGGTTTTGAGAGTCTCTGTTCACTGTGAAGGCTGCAAGAAGAAAATCAACAAAAGCTTAAAACAAATGGAAGGGGTTTACAAAACAGAGGTGGACATGAGGCAGCAAAAACTCACAGTAACAGGGAATGTGGAAGCAGAGACTTTGATCAAGAAGTTGACCAAGTCAGGGAAACATGCAGAGCTGTGGCCTGACCCGAAAGCTAACAATTCAAACGAAAAAAAGAAAGGTAAAGGGAAAAACAAAGAGAAACAGCAAAGTGACTGTGAAGGCTGCGAGGAAAGCAACCACGGTGGCCCTGGAGGTAGTGGTGACAATGAAAAGGAGACTGTCAAAGTTGAAGTTGGTCATGCTCAAGGCTCTGGGAACAAGAAAAAGAATGAAGGTGGTGGCCCGGCTGGTAATAAGAAAGCTGATGGGGGCAATATGGTCAAACCAAATGAAGGTGGTGGCGCACCCGCTAAAACTGGCGGCGGTGGGCAAGTCAAAGAGTCAAAGCCTGAGGTGGTGAGGCAGGGTGGGAATTTACCAAACCATCCACCGGTTGCCGAGAAGAAAAGTGAGGGCGGTGAAAGTGATTGCGAGGTTGAGAAAAGTGGTGGAGGTGGCGGCGGTGGAAGTAAAAATAACAAAAAGAAGGGGCCAAAGGGGAATGCCAATGCTGAAGAGGATGAAGGTGAAGAATGTGTTGCTGCTCCACCAAGCACTGGATCACCAAATCATGGCAATGTGCCACGTGGACCAAGTGGGCCCCATGTTCCTCAGGATCCACGTGGCCCACGTGTGCCTCAGGGTCAGGGCCCCTATGTGCCTCAGGGTCAGGGCCCCTATGTGCCTCAAGGGCATTTTCGGCTTACTGGGCCTACTGGGCCTACTGGGCCTTATGGGTCCCATGGGCCTCGTGGTCCACCCTATGGTCCTCATGGACAAAGCTTTGCTCCAGCTCCAGCCAATCACATTGCTCCAGCTCCAGCCAATCACATTGCTCCAGCTCCAGCCAATCATAGCCCTCCACAGCAACATGTGTATGAGTACCAATACCCAAGGTACAGCCCTCCAATGCAAGCTGTTCACTACAATGCTGGCTTCCCCACCAATGGCTATGGTGCATCTCATTACAATACACCAGCACCTAACTCACACTCCTTCACTGAGACACAGGCCCCATCCTATCATTTGGACAACTATGCATCTCAGCCGTACTATCCATATCATCAGCCATCCTACAACTTACCACAGCCGTCCGATTCCTATGGGTTGTTCAGTGATGAAAATCCCAATGGGTGCTACATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

463

Amino Acids

48.94

Weight (kDa)

8.42

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09921 FvH4_6g06500
malus_domestica	MD04G1201300.v1.1 MD12G1213700.v1.1
prunus_persica	Prupe.6G321400_v2.0.a1 Prupe.6G321400_v2.0.a1
pyrus_communis	pycom04g17730 pycom12g19960
rosa_chinensis	RchiOBHm_Chr3g0455651
rosa_laevigata	RLG00000000137 RLG00000000144 RLG00000000152 RLG00000000192 RLG00000000428 RLG00000000490 RLG00000025343
rosa_multiflora	Rmu_sc0002883.1_g000006
rosa_roxburghii	Rroxscaffold_6G00423630 Rroxscaffold_6G00424130
rosa_rugosa	Rorug03G0009000
rosa_samantha	Rh3AG068500 Rh3BG071000 Rh3CG069300 Rh3DG070900 Rh5BG485600 Rh6CG178600 Rh6DG170400
rosa_wichuraiana	Rw3G005490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	797, 812, 1004
AciI	CCGC	6 cut(s)	549, 561, 564, 657, 699, 702
AclWI	GGATC	3 cut(s)	808, 851, 864
AcsI	RAATTY	2 cut(s)	60, 613
AcuI	CTGAAG	1 cut(s)	774
AcvI	CACGTG	3 cut(s)	827, 863, 872
AfaI	GTAC	3 cut(s)	1124, 1139, 1292
AfiI	CCNNNNNNNGG	7 cut(s)	258, 533, 631, 797, 812, 1004, 1187
AflIII	ACRYGT	2 cut(s)	871, 1111
AgeI	ACCGGT	1 cut(s)	631
AgsI	TTSAA	3 cut(s)	56, 303, 431
AjnI	CCWGG	1 cut(s)	388
Alw26I	GTCTC	4 cut(s)	109, 224, 410, 1238
AlwI	GGATC	3 cut(s)	808, 851, 864
ApaI	GGGCCC	3 cut(s)	843, 893, 917
ApeKI	GCWGC	4 cut(s)	123, 193, 363, 782
ApoI	RAATTY	2 cut(s)	60, 613
ArsI	GACNNNNNNTTYG	2 cut(s)	79, 111
AsiGI	ACCGGT	1 cut(s)	631
AspLEI	GCGC	1 cut(s)	545
AsuC2I	CCSGG	1 cut(s)	485
AsuHPI	GGTGA	5 cut(s)	413, 610, 671, 779, 795
AvaII	GGWCC	4 cut(s)	830, 978, 995, 1007
AxyI	CCTNAGG	4 cut(s)	591, 852, 879, 903
BaeGI	GKGCMC	3 cut(s)	843, 893, 917
BamHI	GGATCC	1 cut(s)	856
BanII	GRGCYC	3 cut(s)	843, 893, 917
BauI	CACGAG	1 cut(s)	990
BbrPI	CACGTG	3 cut(s)	827, 863, 872
BbvI	GCAGC	4 cut(s)	110, 205, 350, 769
BccI	CCATC	4 cut(s)	500, 633, 1264, 1318
BceAI	ACGGC	2 cut(s)	1273, 1315
BciT130I	CCWGG	1 cut(s)	390
BclI	TGATCA	1 cut(s)	237
BcnI	CCSGG	1 cut(s)	485
BcoDI	GTCTC	4 cut(s)	109, 224, 410, 1238
BglI	GCCNNNNNGGC	3 cut(s)	931, 958, 967
BisI	GCNGC	6 cut(s)	124, 194, 364, 562, 700, 783
BlsI	GCNGC	6 cut(s)	125, 195, 365, 563, 701, 784
Bme1390I	CCNGG	2 cut(s)	390, 485
Bme18I	GGWCC	4 cut(s)	830, 978, 995, 1007
BmrFI	CCNGG	2 cut(s)	390, 485
BmrI	ACTGGG	3 cut(s)	957, 966, 975
BmsI	GCATC	2 cut(s)	1208, 1289
BmuI	ACTGGG	3 cut(s)	957, 966, 975
BpmI	CTGGAG	7 cut(s)	411, 1014, 1020, 1038, 1044, 1062, 1068
BpuEI	CTTGAG	2 cut(s)	429, 912
BpuMI	CCSGG	1 cut(s)	485
BsaAI	YACGTR	3 cut(s)	827, 863, 872
BsaBI	GATNNNNATC	1 cut(s)	1362
BsaJI	CCNNGG	5 cut(s)	21, 379, 388, 982, 1133
BsaWI	WCCGGW	1 cut(s)	631
BsaXI	ACNNNNNCTCC	2 cut(s)	1217, 1247
Bsc4I	CCNNNNNNNGG	7 cut(s)	258, 533, 631, 797, 812, 1004, 1187
Bse118I	RCCGGY	1 cut(s)	631
Bse1I	ACTGG	5 cut(s)	562, 802, 952, 961, 970
Bse21I	CCTNAGG	4 cut(s)	591, 852, 879, 903
Bse3DI	GCAATG	3 cut(s)	823, 1047, 1071
Bse8I	GATNNNNATC	1 cut(s)	1362
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	5 cut(s)	21, 379, 388, 982, 1133
BseGI	GGATG	4 cut(s)	625, 766, 1256, 1310
BseJI	GATNNNNATC	1 cut(s)	1362
BseLI	CCNNNNNNNGG	7 cut(s)	258, 533, 631, 797, 812, 1004, 1187
BseMI	GCAATG	3 cut(s)	823, 1047, 1071
BseMII	CTCAG	7 cut(s)	80, 582, 866, 893, 917, 1233, 1298
BseNI	ACTGG	5 cut(s)	562, 802, 952, 961, 970
BseRI	GAGGAG	1 cut(s)	63
BseSI	GKGCMC	3 cut(s)	843, 893, 917
BseXI	GCAGC	4 cut(s)	110, 205, 350, 769
BshTI	ACCGGT	1 cut(s)	631
BsiSI	CCGG	2 cut(s)	485, 632
BslFI	GGGAC	1 cut(s)	964
BslI	CCNNNNNNNGG	7 cut(s)	258, 533, 631, 797, 812, 1004, 1187
BsmAI	GTCTC	4 cut(s)	109, 224, 410, 1238
BsmFI	GGGAC	1 cut(s)	964
BsmI	GAATGC	1 cut(s)	748
Bsp120I	GGGCCC	3 cut(s)	839, 889, 913
Bsp1286I	GDGCHC	3 cut(s)	843, 893, 917
Bsp143I	GATC	3 cut(s)	237, 800, 856
Bsp19I	CCATGG	1 cut(s)	982
BspACI	CCGC	6 cut(s)	549, 561, 564, 657, 699, 702
BspCNI	CTCAG	7 cut(s)	79, 583, 865, 892, 916, 1234, 1297
BspPI	GGATC	3 cut(s)	808, 851, 864
BsrDI	GCAATG	3 cut(s)	823, 1047, 1071
BsrFI	RCCGGY	1 cut(s)	631
BsrI	ACTGG	5 cut(s)	562, 802, 952, 961, 970
BssAI	RCCGGY	1 cut(s)	631
BssECI	CCNNGG	5 cut(s)	21, 379, 388, 982, 1133
BssMI	GATC	3 cut(s)	237, 800, 856
BssSI	CACGAG	1 cut(s)	990
BssT1I	CCWWGG	3 cut(s)	21, 982, 1133
Bst2BI	CACGAG	1 cut(s)	990
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	5 cut(s)	116, 208, 356, 383, 421
Bst6I	CTCTTC	1 cut(s)	750
BstBAI	YACGTR	3 cut(s)	827, 863, 872
BstC8I	GCNNGC	2 cut(s)	1155, 1174
BstDEI	CTNAG	7 cut(s)	66, 591, 852, 879, 903, 1242, 1284
BstDSI	CCRYGG	2 cut(s)	379, 982
BstF5I	GGATG	4 cut(s)	625, 766, 1256, 1310
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	3 cut(s)	240, 803, 859
BstMAI	GTCTC	4 cut(s)	109, 224, 410, 1238
BstMBI	GATC	3 cut(s)	237, 800, 856
BstMWI	GCNNNNNNNGC	6 cut(s)	372, 931, 940, 949, 958, 967
BstNI	CCWGG	1 cut(s)	390
BstNSI	RCATGY	2 cut(s)	269, 1115
BstSCI	CCNGG	2 cut(s)	388, 483
BstSLI	GKGCMC	3 cut(s)	843, 893, 917
BstV1I	GCAGC	4 cut(s)	110, 205, 350, 769
BstX2I	RGATCY	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	856
Bsu36I	CCTNAGG	4 cut(s)	591, 852, 879, 903
BtgI	CCRYGG	2 cut(s)	379, 982
BtsCI	GGATG	4 cut(s)	625, 766, 1256, 1310
BtsIMutI	CAGTG	4 cut(s)	112, 795, 1239, 1360
Cac8I	GCNNGC	2 cut(s)	1155, 1174
CfoI	GCGC	1 cut(s)	545
Cfr10I	RCCGGY	1 cut(s)	631
Csp6I	GTAC	3 cut(s)	1123, 1138, 1291
CspAI	ACCGGT	1 cut(s)	631
CspCI	CAANNNNNGTGG	2 cut(s)	364, 399
CviAII	CATG	9 cut(s)	90, 187, 266, 440, 812, 845, 983, 1013, 1112
CviQI	GTAC	3 cut(s)	1123, 1138, 1291
DdeI	CTNAG	7 cut(s)	66, 591, 852, 879, 903, 1242, 1284
DpnI	GATC	3 cut(s)	239, 802, 858
DpnII	GATC	3 cut(s)	237, 800, 856
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
Eco130I	CCWWGG	3 cut(s)	21, 982, 1133
Eco24I	GRGCYC	3 cut(s)	843, 893, 917
Eco47I	GGWCC	4 cut(s)	830, 978, 995, 1007
Eco57I	CTGAAG	1 cut(s)	774
Eco72I	CACGTG	3 cut(s)	827, 863, 872
Eco81I	CCTNAGG	4 cut(s)	591, 852, 879, 903
EcoO109I	RGGNCCY	7 cut(s)	840, 889, 890, 913, 914, 978, 1252
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	3 cut(s)	21, 982, 1133
EcoT22I	ATGCAT	1 cut(s)	1282
EcoT38I	GRGCYC	3 cut(s)	843, 893, 917
ErhI	CCWWGG	3 cut(s)	21, 982, 1133
FaeI	CATG	9 cut(s)	93, 190, 269, 443, 815, 848, 986, 1016, 1115
FaqI	GGGAC	1 cut(s)	964
FatI	CATG	9 cut(s)	89, 186, 265, 439, 811, 844, 982, 1012, 1111
FauI	CCCGC	1 cut(s)	556
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	6 cut(s)	124, 194, 364, 562, 700, 783
FokI	GGATG	4 cut(s)	612, 773, 1243, 1297
FriOI	GRGCYC	3 cut(s)	843, 893, 917
Fsp4HI	GCNGC	6 cut(s)	124, 194, 364, 562, 700, 783
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	6 cut(s)	124, 194, 364, 562, 700, 783
GsuI	CTGGAG	7 cut(s)	411, 1014, 1020, 1038, 1044, 1062, 1068
HapII	CCGG	2 cut(s)	485, 632
HhaI	GCGC	1 cut(s)	545
Hin1II	CATG	9 cut(s)	93, 190, 269, 443, 815, 848, 986, 1016, 1115
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HindIII	AAGCTT	2 cut(s)	145, 1021
HinfI	GANTC	3 cut(s)	102, 581, 1337
HpaII	CCGG	2 cut(s)	485, 632
HphI	GGTGA	5 cut(s)	413, 610, 671, 779, 795
Hpy166II	GTNNAC	7 cut(s)	112, 169, 184, 249, 830, 998, 1162
Hpy188I	TCNGA	1 cut(s)	1336
Hpy188III	TCNNGA	2 cut(s)	241, 854
Hpy8I	GTNNAC	7 cut(s)	112, 169, 184, 249, 830, 998, 1162
HpyAV	CCTTC	8 cut(s)	113, 155, 353, 467, 527, 721, 758, 1246
HpyCH4III	ACNGT	5 cut(s)	116, 208, 356, 383, 421
HpyCH4IV	ACGT	3 cut(s)	826, 862, 871
HpyCH4V	TGCA	5 cut(s)	126, 269, 1153, 1199, 1280
HpyF10VI	GCNNNNNNNGC	6 cut(s)	372, 931, 940, 949, 958, 967
HpyF3I	CTNAG	7 cut(s)	66, 591, 852, 879, 903, 1242, 1284
HpySE526I	ACGT	3 cut(s)	826, 862, 871
Hsp92II	CATG	9 cut(s)	93, 190, 269, 443, 815, 848, 986, 1016, 1115
HspAI	GCGC	1 cut(s)	543
KflI	GGGWCCC	1 cut(s)	978
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	237, 800, 856
LmnI	GCTCC	7 cut(s)	790, 1033, 1039, 1057, 1063, 1081, 1087
Lsp1109I	GCAGC	4 cut(s)	110, 205, 350, 769
LweI	GCATC	2 cut(s)	1208, 1289
MaeII	ACGT	3 cut(s)	826, 862, 871
MaeIII	GTNAC	3 cut(s)	208, 350, 401
MalI	GATC	3 cut(s)	239, 802, 858
MboI	GATC	3 cut(s)	237, 800, 856
MboII	GAAGA	5 cut(s)	68, 142, 655, 767, 782
MflI	RGATCY	1 cut(s)	856
MhlI	GDGCHC	3 cut(s)	843, 893, 917
MluCI	AATT	4 cut(s)	51, 60, 298, 613
MlyI	GAGTC	2 cut(s)	111, 590
Mph1103I	ATGCAT	1 cut(s)	1282
MseI	TTAA	1 cut(s)	149
MslI	CAYNNNNRTG	3 cut(s)	816, 1116, 1167
MspI	CCGG	2 cut(s)	485, 632
MspR9I	CCNGG	2 cut(s)	390, 485
Mva1269I	GAATGC	1 cut(s)	748
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	6 cut(s)	372, 931, 940, 949, 958, 967
NciI	CCSGG	1 cut(s)	485
NcoI	CCATGG	1 cut(s)	982
NdeII	GATC	3 cut(s)	237, 800, 856
NlaIII	CATG	9 cut(s)	93, 190, 269, 443, 815, 848, 986, 1016, 1115
NmeAIII	GCCGAG	1 cut(s)	664
NmuCI	GTSAC	2 cut(s)	350, 401
NsiI	ATGCAT	1 cut(s)	1282
NspI	RCATGY	2 cut(s)	269, 1115
PciI	ACATGT	1 cut(s)	1111
PcsI	WCGNNNNNNNCGW	1 cut(s)	868
PctI	GAATGC	1 cut(s)	748
PfeI	GAWTC	1 cut(s)	1337
PflFI	GACNNNGTC	1 cut(s)	253
PflMI	CCANNNNNTGG	3 cut(s)	797, 812, 1004
PinAI	ACCGGT	1 cut(s)	631
PkrI	GCNGC	6 cut(s)	125, 195, 365, 563, 701, 784
PleI	GAGTC	2 cut(s)	110, 589
PmaCI	CACGTG	3 cut(s)	827, 863, 872
PmlI	CACGTG	3 cut(s)	827, 863, 872
PpsI	GAGTC	2 cut(s)	110, 589
Ppu21I	YACGTR	3 cut(s)	827, 863, 872
PpuMI	RGGWCCY	1 cut(s)	978
PscI	ACATGT	1 cut(s)	1111
Psp5II	RGGWCCY	1 cut(s)	978
Psp6I	CCWGG	1 cut(s)	388
PspCI	CACGTG	3 cut(s)	827, 863, 872
PspGI	CCWGG	1 cut(s)	388
PspOMI	GGGCCC	3 cut(s)	839, 889, 913
PspPPI	RGGWCCY	1 cut(s)	978
PsuI	RGATCY	1 cut(s)	856
PsyI	GACNNNGTC	1 cut(s)	253
RsaI	GTAC	3 cut(s)	1124, 1139, 1292
RsaNI	GTAC	3 cut(s)	1123, 1138, 1291
RseI	CAYNNNNRTG	3 cut(s)	816, 1116, 1167
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	6 cut(s)	124, 194, 364, 562, 700, 783
Sau3AI	GATC	3 cut(s)	237, 800, 856
SchI	GAGTC	2 cut(s)	111, 590
ScrFI	CCNGG	2 cut(s)	390, 485
SduI	GDGCHC	3 cut(s)	843, 893, 917
SfaNI	GCATC	2 cut(s)	1208, 1289
SfiI	GGCCNNNNNGGCC	2 cut(s)	958, 967
SinI	GGWCC	4 cut(s)	830, 978, 995, 1007
SmiMI	CAYNNNNRTG	3 cut(s)	816, 1116, 1167
SmlI	CTYRAG	2 cut(s)	444, 927
SmoI	CTYRAG	2 cut(s)	444, 927
Sse9I	AATT	4 cut(s)	51, 60, 298, 613
SsiI	CCGC	6 cut(s)	549, 561, 564, 657, 699, 702
StyD4I	CCNGG	2 cut(s)	388, 483
StyI	CCWWGG	3 cut(s)	21, 982, 1133
TaaI	ACNGT	5 cut(s)	116, 208, 356, 383, 421
TaiI	ACGT	3 cut(s)	829, 865, 874
TasI	AATT	4 cut(s)	51, 60, 298, 613
TauI	GCSGC	2 cut(s)	564, 702
TfiI	GAWTC	1 cut(s)	1337
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	4 cut(s)	119, 802, 1246, 1360
TseFI	GTSAC	2 cut(s)	350, 401
TseI	GCWGC	4 cut(s)	123, 193, 363, 782
Tsp45I	GTSAC	2 cut(s)	350, 401
TspDTI	ATGAA	5 cut(s)	423, 486, 546, 777, 1374
TspRI	CASTG	4 cut(s)	119, 802, 1246, 1360
Tth111I	GACNNNGTC	1 cut(s)	253
Van91I	CCANNNNNTGG	3 cut(s)	797, 812, 1004
VpaK11BI	GGWCC	4 cut(s)	830, 978, 995, 1007
XapI	RAATTY	2 cut(s)	60, 613
XceI	RCATGY	2 cut(s)	269, 1115
XcmI	CCANNNNNNNNNTGG	2 cut(s)	386, 989
Zsp2I	ATGCAT	1 cut(s)	1282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.