Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005906

Physical Location & Seq

Genomic Coordinates Forward (+)

937805 .. 939065

Gene Structure 1261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000428

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAAAGAACAGGTTCAAAATCACGATCAATTCCTTTTTCATTTCAAATCCGGCAGCAGCTGCAGCCGTACTCTGCTCCAGTGCATGCGATGAACTACAATGCGGCGCACCCCTGCGTTAGCTACGGCGCGGCTCGCTATGCTACACAACCTGTTTATTCTCAGACGCACACGTATGCACATTGGGGTTTGGGGGGAACTGAGGTTGAGCCGCCATCGTATCATTTTGAAAACCATCCGCCACCCGCCGTCCCATCCACCACAAGCCAACTATCCACCACATCCCTACTATTCCGCCGATTCCGATACCTTCGCCTTGTTCATGTATGGAGGGAAGCTTATACTGCTTGTGTAAGTGATCAAGTGCATGGCGATGTTCTTGGAGAGGTAGAGAAAGTATCCATGGATAATAAAGAGGATGTACACTATGACAAAGAGGGGGTGGGAGTACCAGAAGGCATTGAACCCGCCCTCGGTGCCCTTCACGAACCACCAGTAGTCGTCCGGCCGAAAAACAGCTTCATCTTGTCGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

179

Amino Acids

19.95

Weight (kDa)

6.54

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09921 FvH4_6g06500
malus_domestica	MD04G1201300.v1.1 MD12G1213700.v1.1
prunus_persica	Prupe.6G321400_v2.0.a1 Prupe.6G321400_v2.0.a1
pyrus_communis	pycom04g17730 pycom12g19960
rosa_chinensis	RchiOBHm_Chr3g0455651
rosa_laevigata	RLG00000000137 RLG00000000144 RLG00000000152 RLG00000000192 RLG00000000428 RLG00000000490 RLG00000025343
rosa_multiflora	Rmu_sc0002883.1_g000006
rosa_roxburghii	Rroxscaffold_6G00423630 Rroxscaffold_6G00424130
rosa_rugosa	Rorug03G0009000
rosa_samantha	Rh3AG068500 Rh3BG071000 Rh3CG069300 Rh3DG070900 Rh5BG485600 Rh6CG178600 Rh6DG170400
rosa_wichuraiana	Rw3G005490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	476
AccII	CGCG	1 cut(s)	131
AciI	CCGC	7 cut(s)	104, 131, 212, 239, 246, 295, 468
AcoI	YGGCCR	1 cut(s)	506
AfaI	GTAC	3 cut(s)	71, 423, 450
AfiI	CCNNNNNNNGG	1 cut(s)	473
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	4 cut(s)	18, 47, 230, 464
AluBI	AGCT	4 cut(s)	61, 123, 338, 519
AluI	AGCT	4 cut(s)	61, 123, 338, 519
AlwNI	CAGNNNCTG	1 cut(s)	61
AoxI	GGCC	1 cut(s)	506
ApeKI	GCWGC	4 cut(s)	55, 58, 61, 64
Asp700I	GAANNNNTTC	1 cut(s)	13
AspLEI	GCGC	2 cut(s)	109, 131
BaeGI	GKGCMC	1 cut(s)	481
BanI	GGYRCC	1 cut(s)	476
BbvI	GCAGC	4 cut(s)	48, 67, 70, 76
BccI	CCATC	3 cut(s)	223, 243, 262
BceAI	ACGGC	3 cut(s)	52, 142, 233
BciVI	GTATCC	1 cut(s)	409
BclI	TGATCA	1 cut(s)	358
BfmI	CTRYAG	1 cut(s)	62
BfuI	GTATCC	1 cut(s)	409
BisI	GCNGC	7 cut(s)	56, 59, 62, 65, 105, 132, 212
BlsI	GCNGC	7 cut(s)	57, 60, 63, 66, 106, 133, 213
BmiI	GGNNCC	1 cut(s)	478
BpmI	CTGGAG	1 cut(s)	63
BsaAI	YACGTR	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	402, 472
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse1I	ACTGG	2 cut(s)	80, 494
BseDI	CCNNGG	2 cut(s)	402, 472
BseGI	GGATG	4 cut(s)	235, 254, 281, 424
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMII	CTCAG	2 cut(s)	176, 192
BseNI	ACTGG	2 cut(s)	80, 494
BseSI	GKGCMC	1 cut(s)	481
BseX3I	CGGCCG	1 cut(s)	506
BseXI	GCAGC	4 cut(s)	48, 67, 70, 76
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	509
BshFI	GGCC	1 cut(s)	508
BshNI	GGYRCC	1 cut(s)	476
BsiEI	CGRYCG	1 cut(s)	509
BsiSI	CCGG	2 cut(s)	52, 505
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp1407I	TGTACA	1 cut(s)	421
Bsp143I	GATC	2 cut(s)	26, 358
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	7 cut(s)	104, 131, 212, 239, 246, 295, 468
BspANI	GGCC	1 cut(s)	508
BspCNI	CTCAG	2 cut(s)	175, 193
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	478
BspMAI	CTGCAG	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	476
BsrGI	TGTACA	1 cut(s)	421
BsrI	ACTGG	2 cut(s)	80, 494
BssECI	CCNNGG	2 cut(s)	402, 472
BssMI	GATC	2 cut(s)	26, 358
BssT1I	CCWWGG	1 cut(s)	402
BstAPI	GCANNNNNTGC	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	421
BstBAI	YACGTR	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	87, 136
BstDEI	CTNAG	2 cut(s)	162, 201
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	4 cut(s)	235, 254, 281, 424
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	2 cut(s)	109, 131
BstKTI	GATC	2 cut(s)	29, 361
BstMBI	GATC	2 cut(s)	26, 358
BstMCI	CGRYCG	1 cut(s)	509
BstMWI	GCNNNNNNNGC	6 cut(s)	61, 64, 135, 140, 344, 476
BstNSI	RCATGY	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	62
BstSLI	GKGCMC	1 cut(s)	481
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	4 cut(s)	48, 67, 70, 76
BstZI	CGGCCG	1 cut(s)	506
BsuI	GTATCC	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	508
BtgI	CCRYGG	1 cut(s)	402
BtgZI	GCGATG	2 cut(s)	104, 387
BtsCI	GGATG	4 cut(s)	235, 254, 281, 424
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	87, 136
CaiI	CAGNNNCTG	1 cut(s)	61
CfoI	GCGC	2 cut(s)	109, 131
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	3 cut(s)	70, 422, 449
CviAII	CATG	4 cut(s)	86, 323, 368, 403
CviJI	RGCY	9 cut(s)	61, 67, 123, 134, 211, 267, 338, 508, 519
CviKI_1	RGCY	9 cut(s)	61, 67, 123, 134, 211, 267, 338, 508, 519
CviQI	GTAC	3 cut(s)	70, 422, 449
DdeI	CTNAG	2 cut(s)	162, 201
DpnI	GATC	2 cut(s)	28, 360
DpnII	GATC	2 cut(s)	26, 358
EaeI	YGGCCR	1 cut(s)	506
EagI	CGGCCG	1 cut(s)	506
EciI	GGCGGA	2 cut(s)	228, 284
EclXI	CGGCCG	1 cut(s)	506
Eco130I	CCWWGG	1 cut(s)	402
Eco52I	CGGCCG	1 cut(s)	506
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	4 cut(s)	89, 326, 371, 406
FaiI	YATR	9 cut(s)	87, 141, 177, 324, 328, 342, 369, 404, 429
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	4 cut(s)	85, 322, 367, 402
FauI	CCCGC	2 cut(s)	253, 475
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	7 cut(s)	56, 59, 62, 65, 105, 132, 212
FokI	GGATG	4 cut(s)	222, 241, 268, 431
Fsp4HI	GCNGC	7 cut(s)	56, 59, 62, 65, 105, 132, 212
GlaI	GCGC	2 cut(s)	108, 130
GluI	GCNGC	7 cut(s)	56, 59, 62, 65, 105, 132, 212
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	508
HapII	CCGG	2 cut(s)	52, 505
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	2 cut(s)	109, 131
Hin1II	CATG	4 cut(s)	89, 326, 371, 406
Hin6I	GCGC	2 cut(s)	107, 129
HinP1I	GCGC	2 cut(s)	107, 129
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	1 cut(s)	300
HpaII	CCGG	2 cut(s)	52, 505
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	2 cut(s)	165, 305
Hpy188III	TCNNGA	2 cut(s)	24, 485
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	3 cut(s)	320, 449, 491
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	4 cut(s)	64, 85, 179, 367
HpyF10VI	GCNNNNNNNGC	6 cut(s)	61, 64, 135, 140, 344, 476
HpyF3I	CTNAG	2 cut(s)	162, 201
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	4 cut(s)	89, 326, 371, 406
HspAI	GCGC	2 cut(s)	107, 129
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	26, 358
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	7 cut(s)	65, 93, 127, 165, 465, 507, 518
Lsp1109I	GCAGC	4 cut(s)	48, 67, 70, 76
MaeII	ACGT	1 cut(s)	173
MalI	GATC	2 cut(s)	28, 360
MboI	GATC	2 cut(s)	26, 358
MhlI	GDGCHC	1 cut(s)	481
MluCI	AATT	1 cut(s)	30
MnlI	CCTC	6 cut(s)	196, 324, 379, 409, 430, 482
MroXI	GAANNNNTTC	1 cut(s)	13
MslI	CAYNNNNRTG	2 cut(s)	174, 372
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	2 cut(s)	52, 505
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	6 cut(s)	61, 64, 135, 140, 344, 476
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	2 cut(s)	26, 358
NlaIII	CATG	4 cut(s)	89, 326, 371, 406
NlaIV	GGNNCC	1 cut(s)	478
NspI	RCATGY	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	300
PkrI	GCNGC	7 cut(s)	57, 60, 63, 66, 106, 133, 213
Ppu21I	YACGTR	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	478
PstI	CTGCAG	1 cut(s)	66
PstNI	CAGNNNCTG	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	61
RsaI	GTAC	3 cut(s)	71, 423, 450
RsaNI	GTAC	3 cut(s)	70, 422, 449
RseI	CAYNNNNRTG	2 cut(s)	174, 372
SatI	GCNGC	7 cut(s)	56, 59, 62, 65, 105, 132, 212
Sau3AI	GATC	2 cut(s)	26, 358
SduI	GDGCHC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	62
SmiMI	CAYNNNNRTG	2 cut(s)	174, 372
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	7 cut(s)	104, 131, 212, 239, 246, 295, 468
StyI	CCWWGG	1 cut(s)	402
TaiI	ACGT	1 cut(s)	176
TasI	AATT	1 cut(s)	30
TatI	WGTACW	1 cut(s)	421
TauI	GCSGC	3 cut(s)	107, 134, 214
TfiI	GAWTC	1 cut(s)	300
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	4 cut(s)	55, 58, 61, 64
TspDTI	ATGAA	4 cut(s)	30, 107, 311, 511
TspRI	CASTG	1 cut(s)	87
XceI	RCATGY	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.