pycom04g17730

Heavy-metal-associated domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
20019674 .. 20021382
1709 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g17730.1

Sequence Viewer

Length: 1197 bp
ATGGCAAAAGCTGAAGCTAAGCGGGTTTACAAAACAGAGTTCGATGGGAGCTTCGGGAAGGAAAACAAAGTGACAGTGACTGGGAACGTGGAGCCGGAGATTTTGATCAGGAAGCTGGCCAAGGGAGGGAAACATGCAGAGCTGTGGCTTGATCAGAAGGCTAACAACAGCAATAGTTCAAACGACAAGAAGACAAAAAAGGGGAGGAACAAGGAGAGACAGCAAGGCGAAAACGCCAAAGGCTCCCAAGACGGTAACCATGGCGGACCTGGCTGCGGCGGCAGTGGTGATAATGAAAGGAAACCGGTTAAGGCTGAAGTTGTTCAAGTCCAGGATAATGGTGGTAAGAAGAAAAATGAGGGCGGTGGCGGCGCGGGTGGGAGTAAGAGCGGTGAGGGGGCTAATGCTGTGAAAGTGATTGAGGGCGGTGGTGCACAGGCAAAAAACAGCGGGGGTGGCGGTGGAAAAGGCAAAGAGGTGAAGGTTGAGGGGGTTAGGCAGGGTAAGGCTGTGAACATGTCGGGACAGCCGGATGCGGCGGATAAGTGTTTTGGTGGGGACGACGATGACGATGACAGTGACTGTGAGGTTGAGAAAAGTGGAGGCGGCGGTGGAGGTCGCGACGGTGCTGGCGGCAGTGGAACCAAGAAGAAAAAGAAGGGGCAAAAGGGGAATGCAAATGCTGGCGATTCGGTTGAGGATGAGCAATGTGGTGATGCTGCTCCAGCACGCACTGGATTACCGCCTAATCATGGCAATGTGCCACGTGGTCCTCCTGTGCCTTACATGTTTAATGGGTTCAATGAGCCTCGCATGCCTCCATATGGTACTCAAGGCCCAAACTTTGCTCCGGCTCCGGCACCAGCTCCAGCCAATCACATGGCTCCACATCAGCTGTTGTATGAGTACCAGTACCCCAGGCAGAACAGCAACGGGCGTCCAATCCAAGCTATGAACTTCCATACGGCCTACCCCGCCAGTAGCTACGGTGCATCCCAGTATGCTGCACCACCACCTCACGCACATTCTTACTCTTATGTGTCTCAAAGTGTGGCAGCTGAGACCGAGCCCCGGTCCTATCATTCGGACTCATATCCGCAGTACAACCCGTCTCGGCCGGTATATAATCCGCCGCAGCAGTCCGATTCCTTCGAGCTGTTCAGCGACGAGAATCCGAACGGGTGCACCATTATGTGA

Protein Analysis

399

Amino Acids

41.65

Weight (kDa)

8.09

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 859
AccBSI CCGCTC 1 cut(s) 390
AccII CGCG 2 cut(s) 374, 621
AcoI YGGCCR 2 cut(s) 117, 1115
AcuI CTGAAG 2 cut(s) 33, 336
AcvI CACGTG 1 cut(s) 767
AcyI GRCGYC 1 cut(s) 937
AfaI GTAC 4 cut(s) 829, 908, 914, 1103
AfiI CCNNNNNNNGG 5 cut(s) 126, 275, 752, 824, 1071
AflIII ACRYGT 2 cut(s) 516, 786
AgeI ACCGGT 1 cut(s) 304
AgsI TTSAA 3 cut(s) 180, 326, 802
AjnI CCWGG 3 cut(s) 268, 330, 917
Alw21I GWGCWC 2 cut(s) 436, 1187
Alw26I GTCTC 4 cut(s) 211, 1047, 1055, 1116
Alw44I GTGCAC 2 cut(s) 432, 1183
AlwNI CAGNNNCTG 2 cut(s) 80, 582
AoxI GGCC 4 cut(s) 117, 835, 966, 1115
ApaLI GTGCAC 2 cut(s) 432, 1183
ApeKI GCWGC 5 cut(s) 273, 719, 1004, 1055, 1135
AsiGI ACCGGT 1 cut(s) 304
Asp700I GAANNNNTTC 1 cut(s) 321
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 4 cut(s) 266, 770, 836, 1074
AsuC2I CCSGG 1 cut(s) 1072
AsuHPI GGTGA 4 cut(s) 299, 404, 490, 725
AvaII GGWCC 3 cut(s) 266, 770, 1074
BaeGI GKGCMC 2 cut(s) 436, 1187
BalI TGGCCA 1 cut(s) 119
BanI GGYRCC 1 cut(s) 859
BanII GRGCYC 1 cut(s) 1071
BbrPI CACGTG 1 cut(s) 767
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 436, 1187
BbvI GCAGC 5 cut(s) 260, 706, 991, 1067, 1147
BccI CCATC 1 cut(s) 38
BceAI ACGGC 1 cut(s) 981
BciT130I CCWGG 3 cut(s) 270, 332, 919
BclI TGATCA 2 cut(s) 105, 151
BcnI CCSGG 1 cut(s) 1072
BcoDI GTCTC 4 cut(s) 211, 1047, 1055, 1116
BlpI GCTNAGC 1 cut(s) 18
Bme1390I CCNGG 4 cut(s) 270, 332, 919, 1072
Bme18I GGWCC 3 cut(s) 266, 770, 1074
BmgT120I GGNCC 4 cut(s) 266, 770, 836, 1074
BmiI GGNNCC 6 cut(s) 93, 244, 643, 855, 861, 885
BmrFI CCNGG 4 cut(s) 270, 332, 919, 1072
BmrI ACTGGG 2 cut(s) 90, 991
BmsI GCATC 3 cut(s) 523, 706, 1001
BmuI ACTGGG 2 cut(s) 90, 991
BpiI GAAGAC 1 cut(s) 197
BpmI CTGGAG 2 cut(s) 708, 852
Bpu1102I GCTNAGC 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 816
BpuMI CCSGG 1 cut(s) 1072
BsaAI YACGTR 1 cut(s) 767
BsaBI GATNNNNATC 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 937
BsaI GGTCTC 1 cut(s) 1055
BsaJI CCNNGG 4 cut(s) 120, 259, 917, 1070
BsaWI WCCGGW 1 cut(s) 304
Bsc4I CCNNNNNNNGG 5 cut(s) 126, 275, 752, 824, 1071
Bse118I RCCGGY 2 cut(s) 304, 1117
Bse1I ACTGG 5 cut(s) 85, 739, 910, 978, 997
Bse3DI GCAATG 2 cut(s) 713, 763
Bse8I GATNNNNATC 1 cut(s) 104
BseBI CCWGG 3 cut(s) 270, 332, 919
BseDI CCNNGG 4 cut(s) 120, 259, 917, 1070
BseGI GGATG 3 cut(s) 538, 706, 992
BseJI GATNNNNATC 1 cut(s) 104
BseLI CCNNNNNNNGG 5 cut(s) 126, 275, 752, 824, 1071
BseMI GCAATG 2 cut(s) 713, 763
BseMII CTCAG 1 cut(s) 1050
BseNI ACTGG 5 cut(s) 85, 739, 910, 978, 997
BseSI GKGCMC 2 cut(s) 436, 1187
BseX3I CGGCCG 1 cut(s) 1115
BseXI GCAGC 5 cut(s) 260, 706, 991, 1067, 1147
BsgI GTGCAG 1 cut(s) 990
Bsh1236I CGCG 2 cut(s) 374, 621
Bsh1285I CGRYCG 1 cut(s) 1118
BshFI GGCC 4 cut(s) 119, 837, 968, 1117
BshNI GGYRCC 1 cut(s) 859
BshTI ACCGGT 1 cut(s) 304
BsiEI CGRYCG 1 cut(s) 1118
BsiHKAI GWGCWC 2 cut(s) 436, 1187
BsiSI CCGG 7 cut(s) 95, 305, 530, 851, 857, 1072, 1118
BslFI GGGAC 2 cut(s) 537, 572
BslI CCNNNNNNNGG 5 cut(s) 126, 275, 752, 824, 1071
BsmAI GTCTC 4 cut(s) 211, 1047, 1055, 1116
BsmBI CGTCTC 1 cut(s) 1116
BsmFI GGGAC 2 cut(s) 537, 572
BsmI GAATGC 1 cut(s) 679
BsnI GGCC 4 cut(s) 119, 837, 968, 1117
Bso31I GGTCTC 1 cut(s) 1055
Bsp1286I GDGCHC 3 cut(s) 436, 1071, 1187
Bsp143I GATC 2 cut(s) 105, 151
Bsp1720I GCTNAGC 1 cut(s) 18
Bsp19I CCATGG 1 cut(s) 259
Bsp68I TCGCGA 1 cut(s) 621
BspANI GGCC 4 cut(s) 119, 837, 968, 1117
BspCNI CTCAG 1 cut(s) 1051
BspFNI CGCG 2 cut(s) 374, 621
BspLI GGNNCC 6 cut(s) 93, 244, 643, 855, 861, 885
BspT107I GGYRCC 1 cut(s) 859
BspTNI GGTCTC 1 cut(s) 1055
BsrBI CCGCTC 1 cut(s) 390
BsrDI GCAATG 2 cut(s) 713, 763
BsrFI RCCGGY 2 cut(s) 304, 1117
BsrI ACTGG 5 cut(s) 85, 739, 910, 978, 997
BssAI RCCGGY 2 cut(s) 304, 1117
BssECI CCNNGG 4 cut(s) 120, 259, 917, 1070
BssMI GATC 2 cut(s) 105, 151
BssNI GRCGYC 1 cut(s) 937
BssT1I CCWWGG 2 cut(s) 120, 259
Bst2UI CCWGG 3 cut(s) 270, 332, 919
Bst4CI ACNGT 6 cut(s) 76, 254, 578, 584, 626, 989
BstACI GRCGYC 1 cut(s) 937
BstBAI YACGTR 1 cut(s) 767
BstC8I GCNNGC 5 cut(s) 117, 631, 685, 730, 815
BstDEI CTNAG 2 cut(s) 18, 1059
BstDSI CCRYGG 1 cut(s) 259
BstEII GGTNACC 1 cut(s) 254
BstF5I GGATG 3 cut(s) 538, 706, 992
BstFNI CGCG 2 cut(s) 374, 621
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 2 cut(s) 108, 154
BstMAI GTCTC 4 cut(s) 211, 1047, 1055, 1116
BstMBI GATC 2 cut(s) 105, 151
BstMCI CGRYCG 1 cut(s) 1118
BstMWI GCNNNNNNNGC 7 cut(s) 270, 279, 369, 456, 725, 814, 974
BstNI CCWGG 3 cut(s) 270, 332, 919
BstNSI RCATGY 4 cut(s) 137, 520, 790, 817
BstPI GGTNACC 1 cut(s) 254
BstSCI CCNGG 4 cut(s) 268, 330, 917, 1070
BstSLI GKGCMC 2 cut(s) 436, 1187
BstUI CGCG 2 cut(s) 374, 621
BstV1I GCAGC 5 cut(s) 260, 706, 991, 1067, 1147
BstV2I GAAGAC 1 cut(s) 197
BstXI CCANNNNNNTGG 2 cut(s) 338, 880
BstZI CGGCCG 1 cut(s) 1115
BsuRI GGCC 4 cut(s) 119, 837, 968, 1117
BtgI CCRYGG 1 cut(s) 259
BtsCI GGATG 3 cut(s) 538, 706, 992
BtsI GCAGTG 2 cut(s) 289, 643
BtsIMutI CAGTG 5 cut(s) 81, 289, 583, 643, 732
BtuMI TCGCGA 1 cut(s) 621
Cac8I GCNNGC 5 cut(s) 117, 631, 685, 730, 815
CaiI CAGNNNCTG 2 cut(s) 80, 582
CfoI GCGC 1 cut(s) 374
Cfr10I RCCGGY 2 cut(s) 304, 1117
Cfr13I GGNCC 4 cut(s) 266, 770, 836, 1074
CseI GACGC 1 cut(s) 926
Csp6I GTAC 4 cut(s) 828, 907, 913, 1102
CspAI ACCGGT 1 cut(s) 304
CviAII CATG 7 cut(s) 134, 260, 517, 752, 787, 814, 880
CviQI GTAC 4 cut(s) 828, 907, 913, 1102
DdeI CTNAG 2 cut(s) 18, 1059
DpnI GATC 2 cut(s) 107, 153
DpnII GATC 2 cut(s) 105, 151
EaeI YGGCCR 2 cut(s) 117, 1115
EagI CGGCCG 1 cut(s) 1115
EciI GGCGGA 3 cut(s) 279, 554, 1119
EclXI CGGCCG 1 cut(s) 1115
Eco130I CCWWGG 2 cut(s) 120, 259
Eco24I GRGCYC 1 cut(s) 1071
Eco31I GGTCTC 1 cut(s) 1055
Eco47I GGWCC 3 cut(s) 266, 770, 1074
Eco52I CGGCCG 1 cut(s) 1115
Eco57I CTGAAG 2 cut(s) 33, 336
Eco72I CACGTG 1 cut(s) 767
Eco91I GGTNACC 1 cut(s) 254
EcoO65I GGTNACC 1 cut(s) 254
EcoRII CCWGG 3 cut(s) 268, 330, 917
EcoT14I CCWWGG 2 cut(s) 120, 259
EcoT38I GRGCYC 1 cut(s) 1071
ErhI CCWWGG 2 cut(s) 120, 259
Esp3I CGTCTC 1 cut(s) 1116
FaeI CATG 7 cut(s) 137, 263, 520, 755, 790, 817, 883
FaqI GGGAC 2 cut(s) 537, 572
FatI CATG 7 cut(s) 133, 259, 516, 751, 786, 813, 879
FauI CCCGC 4 cut(s) 15, 367, 443, 982
FauNDI CATATG 1 cut(s) 823
FbaI TGATCA 2 cut(s) 105, 151
FokI GGATG 3 cut(s) 545, 713, 979
FriOI GRGCYC 1 cut(s) 1071
GlaI GCGC 1 cut(s) 373
GsuI CTGGAG 2 cut(s) 708, 852
HaeIII GGCC 4 cut(s) 119, 837, 968, 1117
HapII CCGG 7 cut(s) 95, 305, 530, 851, 857, 1072, 1118
HgaI GACGC 1 cut(s) 926
HhaI GCGC 1 cut(s) 374
Hin1I GRCGYC 1 cut(s) 937
Hin1II CATG 7 cut(s) 137, 263, 520, 755, 790, 817, 883
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HinfI GANTC 4 cut(s) 689, 1088, 1145, 1171
HpaII CCGG 7 cut(s) 95, 305, 530, 851, 857, 1072, 1118
HphI GGTGA 4 cut(s) 299, 404, 490, 725
Hpy166II GTNNAC 4 cut(s) 28, 434, 514, 1185
Hpy188I TCNGA 4 cut(s) 156, 1087, 1144, 1176
Hpy188III TCNNGA 4 cut(s) 55, 109, 522, 620
Hpy8I GTNNAC 4 cut(s) 28, 434, 514, 1185
Hpy99I CGWCG 3 cut(s) 566, 626, 1169
HpyAV CCTTC 5 cut(s) 52, 151, 475, 652, 1159
HpyCH4III ACNGT 6 cut(s) 76, 254, 578, 584, 626, 989
HpyCH4IV ACGT 2 cut(s) 87, 766
HpyCH4V TGCA 6 cut(s) 137, 434, 677, 992, 1007, 1185
HpyF10VI GCNNNNNNNGC 7 cut(s) 270, 279, 369, 456, 725, 814, 974
HpyF3I CTNAG 2 cut(s) 18, 1059
HpySE526I ACGT 2 cut(s) 87, 766
Hsp92I GRCGYC 1 cut(s) 937
Hsp92II CATG 7 cut(s) 137, 263, 520, 755, 790, 817, 883
HspAI GCGC 1 cut(s) 372
Ksp22I TGATCA 2 cut(s) 105, 151
Kzo9I GATC 2 cut(s) 105, 151
LmnI GCTCC 8 cut(s) 48, 91, 248, 727, 853, 859, 871, 889
Lsp1109I GCAGC 5 cut(s) 260, 706, 991, 1067, 1147
LweI GCATC 3 cut(s) 523, 706, 1001
MaeII ACGT 2 cut(s) 87, 766
MaeIII GTNAC 4 cut(s) 70, 76, 254, 578
MalI GATC 2 cut(s) 107, 153
MbiI CCGCTC 1 cut(s) 390
MboI GATC 2 cut(s) 105, 151
MboII GAAGA 3 cut(s) 202, 361, 661
MhlI GDGCHC 3 cut(s) 436, 1071, 1187
MlsI TGGCCA 1 cut(s) 119
MluNI TGGCCA 1 cut(s) 119
MlyI GAGTC 1 cut(s) 1082
Mox20I TGGCCA 1 cut(s) 119
MroXI GAANNNNTTC 1 cut(s) 321
MscI TGGCCA 1 cut(s) 119
MseI TTAA 2 cut(s) 309, 792
MslI CAYNNNNRTG 2 cut(s) 756, 1190
Msp20I TGGCCA 1 cut(s) 119
MspA1I CMGCKG 3 cut(s) 450, 895, 1058
MspI CCGG 7 cut(s) 95, 305, 530, 851, 857, 1072, 1118
MspR9I CCNGG 4 cut(s) 270, 332, 919, 1072
Mva1269I GAATGC 1 cut(s) 679
MvaI CCWGG 3 cut(s) 270, 332, 919
MvnI CGCG 2 cut(s) 374, 621
MwoI GCNNNNNNNGC 7 cut(s) 270, 279, 369, 456, 725, 814, 974
NciI CCSGG 1 cut(s) 1072
NcoI CCATGG 1 cut(s) 259
NdeI CATATG 1 cut(s) 823
NdeII GATC 2 cut(s) 105, 151
NlaIII CATG 7 cut(s) 137, 263, 520, 755, 790, 817, 883
NlaIV GGNNCC 6 cut(s) 93, 244, 643, 855, 861, 885
NmeAIII GCCGAG 1 cut(s) 1093
NmuCI GTSAC 3 cut(s) 70, 76, 578
NruI TCGCGA 1 cut(s) 621
NspI RCATGY 4 cut(s) 137, 520, 790, 817
PaeI GCATGC 1 cut(s) 817
PciI ACATGT 2 cut(s) 516, 786
PcsI WCGNNNNNNNCGW 1 cut(s) 567
PctI GAATGC 1 cut(s) 679
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 3 cut(s) 689, 1145, 1171
PfoI TCCNGGA 1 cut(s) 330
PinAI ACCGGT 1 cut(s) 304
PleI GAGTC 1 cut(s) 1082
PmaCI CACGTG 1 cut(s) 767
PmlI CACGTG 1 cut(s) 767
PpsI GAGTC 1 cut(s) 1082
Ppu21I YACGTR 1 cut(s) 767
PscI ACATGT 2 cut(s) 516, 786
Psp6I CCWGG 3 cut(s) 268, 330, 917
PspCI CACGTG 1 cut(s) 767
PspEI GGTNACC 1 cut(s) 254
PspGI CCWGG 3 cut(s) 268, 330, 917
PspN4I GGNNCC 6 cut(s) 93, 244, 643, 855, 861, 885
PspPI GGNCC 4 cut(s) 266, 770, 836, 1074
PstNI CAGNNNCTG 2 cut(s) 80, 582
PvuII CAGCTG 2 cut(s) 895, 1058
RruI TCGCGA 1 cut(s) 621
RsaI GTAC 4 cut(s) 829, 908, 914, 1103
RsaNI GTAC 4 cut(s) 828, 907, 913, 1102
RseI CAYNNNNRTG 2 cut(s) 756, 1190
SaqAI TTAA 2 cut(s) 309, 792
Sau3AI GATC 2 cut(s) 105, 151
Sau96I GGNCC 4 cut(s) 266, 770, 836, 1074
SchI GAGTC 1 cut(s) 1082
ScrFI CCNGG 4 cut(s) 270, 332, 919, 1072
SduI GDGCHC 3 cut(s) 436, 1071, 1187
SfaNI GCATC 3 cut(s) 523, 706, 1001
SinI GGWCC 3 cut(s) 266, 770, 1074
SmiMI CAYNNNNRTG 2 cut(s) 756, 1190
SmlI CTYRAG 1 cut(s) 831
SmoI CTYRAG 1 cut(s) 831
SphI GCATGC 1 cut(s) 817
StyD4I CCNGG 4 cut(s) 268, 330, 917, 1070
StyI CCWWGG 2 cut(s) 120, 259
TaaI ACNGT 6 cut(s) 76, 254, 578, 584, 626, 989
TaiI ACGT 2 cut(s) 90, 769
TaqI TCGA 2 cut(s) 42, 1152
TaqII GACCGA 1 cut(s) 1079
TatI WGTACW 1 cut(s) 1101
TauI GCSGC 7 cut(s) 279, 282, 372, 539, 609, 636, 1135
TfiI GAWTC 3 cut(s) 689, 1145, 1171
Tru1I TTAA 2 cut(s) 309, 792
Tru9I TTAA 2 cut(s) 309, 792
TscAI CASTG 5 cut(s) 81, 289, 583, 643, 739
TseFI GTSAC 3 cut(s) 70, 76, 578
TseI GCWGC 5 cut(s) 273, 719, 1004, 1055, 1135
Tsp45I GTSAC 3 cut(s) 70, 76, 578
TspDTI ATGAA 2 cut(s) 309, 968
TspRI CASTG 5 cut(s) 81, 289, 583, 643, 739
VneI GTGCAC 2 cut(s) 432, 1183
VpaK11BI GGWCC 3 cut(s) 266, 770, 1074
XceI RCATGY 4 cut(s) 137, 520, 790, 817
XcmI CCANNNNNNNNNTGG 2 cut(s) 266, 338
XmnI GAANNNNTTC 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.