Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005906

Physical Location & Seq

Genomic Coordinates Forward (+)

3803190 .. 3804994

Gene Structure 1805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCTTCAACAACTCAACCTCAAGGCGAACTCCAACAAACATCTTCAGATGCTTTTACTGAAACAACTCTGAGACACAAGACTTACGTCCTAAAGGTATCTGCTTACTGTAATGCGTGCGTCAAAAGAGTGAACGAAATTTTGAAGACTATTGAAGGTGTATATATTACACAAGTCGACTTTGCTCATCATACTGTCACGGTGCATGGCAACGTGGAAGTTGAAACCTTGATCAAGGGTCTCGCGAAGAAGACGAAAAAAGATGTCAAGGTTTTGTGGCCTGAACGGAAAGCCAATCCCAAAGAAGTGCGTCTGAGCAAACCCAAAAGCAATGAAGAACATAGTGGCTCAGTCGAGACATCAGAGGAAGCGAAAGAAAACCAAGGCGGCGGTGATGAGAAAAGAAAGGGGAAGCAGCCAATCAAGGCTGAGGTTGTTGAAGTCAAGGAGTCTGGAAGTACTAGGAAAAAGAATTTTGAAGCAGGTAGCTGTAGTTATAGCATGGAAATTGAGGAGGAGGCACAAACCAGCAACTTGCCAAGCCAGTTACCGCTGGTGGTGGCTGAGAAGCAGAGTGGGGTTGCTGAGAGTGAAGTTGTGGGTAAGAAAGCAGGAGGTGGAGATGGCAATAGCAATGGGAGTGGTGGTGTTGGTGGCGGCGCTAATGAAAACGTTCACCTAATGGAGCAGCAGCCGTACTTCACTCCAGTGCATGGATTGCATTATCATGCAGCATTGCCCAACCCTAGCTATGCCCAAGAGTCTGCTTATTGCGAGACTCCGACGTATGCCCATTGGGGTTTGGGGAGTGAGCATGGTTGGACTCATAATTTGGACGACCTCCCCCTGCCGCCGCTGCTGCCGGTTCAGCCTCCTCAGCCCTATCCACCACCACCACATCCTTACAGTTCCTCCGTATCAGCTGATACATTTGCATTTTTCAGTGATGAAAATGCTAATGGGTGTAGTGTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

326

Amino Acids

35.21

Weight (kDa)

5.73

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	35 - 84	3.2e-09	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09921 FvH4_6g06500
malus_domestica	MD04G1201300.v1.1 MD12G1213700.v1.1
prunus_persica	Prupe.6G321400_v2.0.a1 Prupe.6G321400_v2.0.a1
pyrus_communis	pycom04g17730 pycom12g19960
rosa_chinensis	RchiOBHm_Chr3g0455651
rosa_laevigata	RLG00000000137 RLG00000000144 RLG00000000152 RLG00000000192 RLG00000000428 RLG00000000490 RLG00000025343
rosa_multiflora	Rmu_sc0002883.1_g000006
rosa_roxburghii	Rroxscaffold_6G00423630 Rroxscaffold_6G00424130
rosa_rugosa	Rorug03G0009000
rosa_samantha	Rh3AG068500 Rh3BG071000 Rh3CG069300 Rh3DG070900 Rh5BG485600 Rh6CG178600 Rh6DG170400
rosa_wichuraiana	Rw3G005490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	473
AccB7I	CCANNNNNTGG	1 cut(s)	713
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	1 cut(s)	245
AciI	CCGC	6 cut(s)	387, 390, 551, 657, 851, 854
AclI	AACGTT	1 cut(s)	672
AcsI	RAATTY	2 cut(s)	138, 472
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	2 cut(s)	460, 698
AfiI	CCNNNNNNNGG	1 cut(s)	713
AgsI	TTSAA	6 cut(s)	9, 145, 155, 224, 440, 479
AleI	CACNNNNGTG	1 cut(s)	707
AluBI	AGCT	3 cut(s)	489, 750, 923
AluI	AGCT	3 cut(s)	489, 750, 923
Alw26I	GTCTC	4 cut(s)	67, 245, 350, 770
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	6 cut(s)	415, 688, 691, 731, 856, 859
ApoI	RAATTY	2 cut(s)	138, 472
ArsI	GACNNNNNNTTYG	2 cut(s)	814, 846
Asp700I	GAANNNNTTC	1 cut(s)	672
AspLEI	GCGC	1 cut(s)	662
AsuHPI	GGTGA	2 cut(s)	404, 668
BbsI	GAAGAC	2 cut(s)	152, 257
BbvCI	CCTCAGC	2 cut(s)	429, 876
BbvI	GCAGC	6 cut(s)	427, 700, 703, 743, 843, 846
BccI	CCATC	1 cut(s)	617
BceAI	ACGGC	1 cut(s)	679
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	4 cut(s)	67, 245, 350, 770
BfaI	CTAG	2 cut(s)	462, 747
BfmI	CTRYAG	1 cut(s)	490
BfoI	RGCGCY	1 cut(s)	663
BfuAI	ACCTGC	1 cut(s)	473
BmcAI	AGTACT	1 cut(s)	460
BmsI	GCATC	1 cut(s)	40
BoxI	GACNNNNGTC	1 cut(s)	86
BpiI	GAAGAC	2 cut(s)	152, 257
BpmI	CTGGAG	1 cut(s)	690
Bpu10I	CCTNAGC	2 cut(s)	429, 876
BpuEI	CTTGAG	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	382
BsaXI	ACNNNNNCTCC	4 cut(s)	631, 661, 896, 926
Bsc4I	CCNNNNNNNGG	1 cut(s)	713
Bse118I	RCCGGY	1 cut(s)	862
Bse1I	ACTGG	2 cut(s)	544, 707
Bse3DI	GCAATG	3 cut(s)	337, 640, 734
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	1 cut(s)	898
BseLI	CCNNNNNNNGG	1 cut(s)	713
BseMI	GCAATG	3 cut(s)	337, 640, 734
BseMII	CTCAG	7 cut(s)	62, 305, 363, 420, 555, 576, 890
BseNI	ACTGG	2 cut(s)	544, 707
BseRI	GAGGAG	3 cut(s)	527, 530, 864
BseXI	GCAGC	6 cut(s)	427, 700, 703, 743, 843, 846
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	863
BslI	CCNNNNNNNGG	1 cut(s)	713
BsmAI	GTCTC	4 cut(s)	67, 245, 350, 770
BsnI	GGCC	1 cut(s)	280
Bso31I	GGTCTC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	231
Bsp68I	TCGCGA	1 cut(s)	245
BspACI	CCGC	6 cut(s)	387, 390, 551, 657, 851, 854
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	7 cut(s)	63, 306, 362, 421, 556, 577, 889
BspFNI	CGCG	1 cut(s)	245
BspMI	ACCTGC	1 cut(s)	473
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	3 cut(s)	337, 640, 734
BsrFI	RCCGGY	1 cut(s)	862
BsrI	ACTGG	2 cut(s)	544, 707
BssAI	RCCGGY	1 cut(s)	862
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	382
Bst4CI	ACNGT	4 cut(s)	110, 196, 202, 908
BstAPI	GCANNNNNTGC	1 cut(s)	718
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	7 cut(s)	71, 314, 349, 429, 564, 585, 876
BstF5I	GGATG	1 cut(s)	898
BstFNI	CGCG	1 cut(s)	245
BstH2I	RGCGCY	1 cut(s)	663
BstHHI	GCGC	1 cut(s)	662
BstKTI	GATC	1 cut(s)	234
BstMAI	GTCTC	4 cut(s)	67, 245, 350, 770
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	5 cut(s)	718, 856, 859, 868, 877
BstPAI	GACNNNNGTC	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	490
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	6 cut(s)	427, 700, 703, 743, 843, 846
BstV2I	GAAGAC	2 cut(s)	152, 257
BsuRI	GGCC	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	898
BtsIMutI	CAGTG	2 cut(s)	714, 949
BtuMI	TCGCGA	1 cut(s)	245
BveI	ACCTGC	1 cut(s)	473
Cac8I	GCNNGC	1 cut(s)	118
CfoI	GCGC	1 cut(s)	662
Cfr10I	RCCGGY	1 cut(s)	862
CseI	GACGC	2 cut(s)	109, 299
Csp6I	GTAC	2 cut(s)	459, 697
CspCI	CAANNNNNGTGG	2 cut(s)	622, 657
CviAII	CATG	6 cut(s)	206, 502, 713, 728, 815, 973
CviQI	GTAC	2 cut(s)	459, 697
DdeI	CTNAG	7 cut(s)	71, 314, 349, 429, 564, 585, 876
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	382
Eco31I	GGTCTC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	6 cut(s)	209, 505, 716, 731, 818, 976
FatI	CATG	6 cut(s)	205, 501, 712, 727, 814, 972
FbaI	TGATCA	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	177
FokI	GGATG	1 cut(s)	885
FspBI	CTAG	2 cut(s)	462, 747
GlaI	GCGC	1 cut(s)	661
GsuI	CTGGAG	1 cut(s)	690
HaeII	RGCGCY	1 cut(s)	663
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	1 cut(s)	863
HgaI	GACGC	2 cut(s)	109, 299
HhaI	GCGC	1 cut(s)	662
Hin1II	CATG	6 cut(s)	209, 505, 716, 731, 818, 976
Hin6I	GCGC	1 cut(s)	660
HinP1I	GCGC	1 cut(s)	660
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	4 cut(s)	449, 761, 778, 823
HpaII	CCGG	1 cut(s)	863
HphI	GGTGA	2 cut(s)	404, 668
Hpy166II	GTNNAC	3 cut(s)	133, 178, 676
Hpy188I	TCNGA	5 cut(s)	49, 72, 315, 364, 783
Hpy188III	TCNNGA	3 cut(s)	244, 355, 453
Hpy8I	GTNNAC	3 cut(s)	133, 178, 676
Hpy99I	CGWCG	1 cut(s)	787
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	4 cut(s)	110, 196, 202, 908
HpyCH4IV	ACGT	4 cut(s)	87, 213, 672, 785
HpyCH4V	TGCA	5 cut(s)	205, 712, 721, 731, 935
HpyF10VI	GCNNNNNNNGC	5 cut(s)	718, 856, 859, 868, 877
HpyF3I	CTNAG	7 cut(s)	71, 314, 349, 429, 564, 585, 876
HpySE526I	ACGT	4 cut(s)	87, 213, 672, 785
Hsp92II	CATG	6 cut(s)	209, 505, 716, 731, 818, 976
HspAI	GCGC	1 cut(s)	660
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	231
LmnI	GCTCC	1 cut(s)	685
Lsp1109I	GCAGC	6 cut(s)	427, 700, 703, 743, 843, 846
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	2 cut(s)	462, 747
MaeII	ACGT	4 cut(s)	87, 213, 672, 785
MaeIII	GTNAC	2 cut(s)	196, 546
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	5 cut(s)	36, 157, 259, 262, 347
MluCI	AATT	4 cut(s)	138, 472, 507, 829
MlyI	GAGTC	4 cut(s)	458, 770, 772, 817
MmeI	TCCRAC	3 cut(s)	58, 800, 806
MroXI	GAANNNNTTC	1 cut(s)	672
MslI	CAYNNNNRTG	2 cut(s)	707, 726
MspA1I	CMGCKG	3 cut(s)	553, 856, 923
MspI	CCGG	1 cut(s)	863
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	5 cut(s)	718, 856, 859, 868, 877
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	6 cut(s)	209, 505, 716, 731, 818, 976
NmuCI	GTSAC	1 cut(s)	196
NruI	TCGCGA	1 cut(s)	245
OliI	CACNNNNGTG	1 cut(s)	707
PdmI	GAANNNNTTC	1 cut(s)	672
PflMI	CCANNNNNTGG	1 cut(s)	713
PleI	GAGTC	4 cut(s)	457, 769, 772, 817
PpsI	GAGTC	4 cut(s)	457, 769, 772, 817
PshAI	GACNNNNGTC	1 cut(s)	86
Psp1406I	AACGTT	1 cut(s)	672
PvuII	CAGCTG	1 cut(s)	923
RruI	TCGCGA	1 cut(s)	245
RsaI	GTAC	2 cut(s)	460, 698
RsaNI	GTAC	2 cut(s)	459, 697
RseI	CAYNNNNRTG	2 cut(s)	707, 726
SalI	GTCGAC	1 cut(s)	176
Sau3AI	GATC	1 cut(s)	231
ScaI	AGTACT	1 cut(s)	460
SchI	GAGTC	4 cut(s)	458, 770, 772, 817
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	1 cut(s)	490
SmiMI	CAYNNNNRTG	2 cut(s)	707, 726
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	4 cut(s)	138, 472, 507, 829
SsiI	CCGC	6 cut(s)	387, 390, 551, 657, 851, 854
SspMI	CTAG	2 cut(s)	462, 747
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	4 cut(s)	110, 196, 202, 908
TaiI	ACGT	4 cut(s)	90, 216, 675, 788
TaqI	TCGA	2 cut(s)	177, 354
TasI	AATT	4 cut(s)	138, 472, 507, 829
TatI	WGTACW	1 cut(s)	458
TauI	GCSGC	4 cut(s)	390, 660, 853, 856
TscAI	CASTG	2 cut(s)	714, 949
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	6 cut(s)	415, 688, 691, 731, 856, 859
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	3 cut(s)	348, 681, 963
TspGWI	ACGGA	2 cut(s)	301, 904
TspRI	CASTG	2 cut(s)	714, 949
Van91I	CCANNNNNTGG	1 cut(s)	713
XapI	RAATTY	2 cut(s)	138, 472
XmiI	GTMKAC	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	2 cut(s)	462, 747
ZrmI	AGTACT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.