Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008128

Physical Location & Seq

Genomic Coordinates Reverse (-)

6635614 .. 6636138

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTGCAACCCTACTCGGCTGATGTCAAGTTCAAATACAATGCCGTTGGAAATGAAGTACACCCTGATGCTGCAGAAGCCCTCCCAATATCTTCTTCCTGTCGTACAGAATATTCAGAATACCGTAACAGCCGCTTATCTACAAGGCCAAATCAAAGTGTCAACAGCAATAGATACAACTCTTTTGGGCCCTAGTTTCCCTTCTTCAAATGGGGCATTCAGCAATGCTGCGAATTCATTTATTACCCTAATAATCACCTTTCTGGGCAACAATGGAGCACTACTTCGTGTCAATATACACCCCTACGCCTATATTGGTGACCCTGCTAACATAAAACTAGAATATGCCTTGTTCACTTCACCAGGGGTAGTGGTACAGGATGGCAATGGGTACCCGAACATCTTTAATGCTATCTTGGATACTCATTACTCTGTTCTTGAAAAAGCAGGTGCACCCAATACGGCGATAGTTGTATCCAAGAGTGGTTGGCCATCTGAAGGTAGTGATGCTACAAATATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

175

Amino Acids

18.7

Weight (kDa)

6.03

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	28 - 170	6.2e-33	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008128)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11270 FvH4_3g28370 FvH4_3g28390 FvH4_4g30150
malus_domestica	MD03G1171500.v1.1 MD11G1189000.v1.1 MD12G1089500.v1.1
prunus_persica	Prupe.2G263400_v2.0.a1 Prupe.2G270100_v2.0.a1 Prupe.4G255600_v2.0.a1
pyrus_communis	pycom01g17970 pycom03g12870 pycom11g16540 pycom12g07370
rosa_chinensis	RchiOBHm_Chr5g0053361
rosa_laevigata	RLG00000034767
rosa_multiflora	Rmu_sc0001966.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029090
rosa_rugosa	Rorug05G0267400
rosa_samantha	Rh5AG340000 Rh5BG350400 Rh5CG376700 Rh5DG364300
rosa_wichuraiana	Rw5G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	437
Acc36I	ACCTGC	1 cut(s)	437
Acc65I	GGTACC	1 cut(s)	390
AccB1I	GGYRCC	1 cut(s)	390
AciI	CCGC	1 cut(s)	132
AcoI	YGGCCR	1 cut(s)	488
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	516
AfaI	GTAC	4 cut(s)	59, 105, 375, 392
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	3 cut(s)	33, 207, 440
AjnI	CCWGG	1 cut(s)	361
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
Alw21I	GWGCWC	2 cut(s)	280, 454
Alw44I	GTGCAC	1 cut(s)	450
AoxI	GGCC	3 cut(s)	145, 187, 488
ApaI	GGGCCC	1 cut(s)	191
ApaLI	GTGCAC	1 cut(s)	450
ApeKI	GCWGC	2 cut(s)	70, 227
ApoI	RAATTY	1 cut(s)	232
Asp718I	GGTACC	1 cut(s)	390
AspS9I	GGNCC	2 cut(s)	187, 188
AsuHPI	GGTGA	3 cut(s)	247, 329, 351
BaeGI	GKGCMC	2 cut(s)	191, 454
BalI	TGGCCA	1 cut(s)	490
BanI	GGYRCC	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	2 cut(s)	280, 454
BbvI	GCAGC	2 cut(s)	57, 214
BccI	CCATC	2 cut(s)	374, 499
BceAI	ACGGC	2 cut(s)	28, 477
BciT130I	CCWGG	1 cut(s)	363
BciVI	GTATCC	2 cut(s)	412, 484
BfaI	CTAG	2 cut(s)	192, 338
BfmI	CTRYAG	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	437
BfuI	GTATCC	2 cut(s)	412, 484
BisI	GCNGC	3 cut(s)	71, 132, 228
BlsI	GCNGC	3 cut(s)	72, 133, 229
Bme1390I	CCNGG	1 cut(s)	363
BmgT120I	GGNCC	2 cut(s)	187, 188
BmiI	GGNNCC	2 cut(s)	189, 392
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	2 cut(s)	57, 496
BsaJI	CCNNGG	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse3DI	GCAATG	2 cut(s)	229, 391
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	2 cut(s)	229, 391
BseSI	GKGCMC	2 cut(s)	191, 454
BseXI	GCAGC	2 cut(s)	57, 214
BshFI	GGCC	3 cut(s)	147, 189, 490
BshNI	GGYRCC	1 cut(s)	390
BsiHKAI	GWGCWC	2 cut(s)	280, 454
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	147, 189, 490
Bsp120I	GGGCCC	1 cut(s)	187
Bsp1286I	GDGCHC	3 cut(s)	191, 280, 454
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	3 cut(s)	147, 189, 490
BspLI	GGNNCC	2 cut(s)	189, 392
BspMAI	CTGCAG	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	437
BspT107I	GGYRCC	1 cut(s)	390
BsrDI	GCAATG	2 cut(s)	229, 391
BssECI	CCNNGG	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	124
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	363
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	71
BstSLI	GKGCMC	2 cut(s)	191, 454
BstV1I	GCAGC	2 cut(s)	57, 214
BsuI	GTATCC	2 cut(s)	412, 484
BsuRI	GGCC	3 cut(s)	147, 189, 490
BtsCI	GGATG	1 cut(s)	385
BveI	ACCTGC	1 cut(s)	437
Cfr13I	GGNCC	2 cut(s)	187, 188
Csp6I	GTAC	4 cut(s)	58, 104, 374, 391
CviJI	RGCY	6 cut(s)	19, 79, 131, 147, 189, 490
CviKI_1	RGCY	6 cut(s)	19, 79, 131, 147, 189, 490
CviQI	GTAC	4 cut(s)	58, 104, 374, 391
EaeI	YGGCCR	1 cut(s)	488
Eco24I	GRGCYC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	516
Eco91I	GGTNACC	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	188
EcoO65I	GGTNACC	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	191
FaiI	YATR	5 cut(s)	296, 312, 332, 345, 518
Fnu4HI	GCNGC	3 cut(s)	71, 132, 228
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	3 cut(s)	71, 132, 228
FspBI	CTAG	2 cut(s)	192, 338
GluI	GCNGC	3 cut(s)	71, 132, 228
HaeIII	GGCC	3 cut(s)	147, 189, 490
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HphI	GGTGA	3 cut(s)	247, 329, 351
Hpy166II	GTNNAC	4 cut(s)	60, 162, 354, 452
Hpy188I	TCNGA	2 cut(s)	117, 496
Hpy188III	TCNNGA	1 cut(s)	437
Hpy8I	GTNNAC	4 cut(s)	60, 162, 354, 452
HpyAV	CCTTC	2 cut(s)	210, 491
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	6, 73, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
KpnI	GGTACC	1 cut(s)	394
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	8 cut(s)	77, 111, 248, 336, 348, 362, 375, 432
Lsp1109I	GCAGC	2 cut(s)	57, 214
LweI	GCATC	2 cut(s)	57, 496
MaeI	CTAG	2 cut(s)	192, 338
MaeIII	GTNAC	2 cut(s)	124, 317
MboII	GAAGA	3 cut(s)	83, 86, 195
MhlI	GDGCHC	3 cut(s)	191, 280, 454
MlsI	TGGCCA	1 cut(s)	490
MluCI	AATT	1 cut(s)	232
MluNI	TGGCCA	1 cut(s)	490
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	1 cut(s)	91
Mox20I	TGGCCA	1 cut(s)	490
MscI	TGGCCA	1 cut(s)	490
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	490
MspR9I	CCNGG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	76
NlaIV	GGNNCC	2 cut(s)	189, 392
NmuCI	GTSAC	1 cut(s)	317
PaqCI	CACCTGC	1 cut(s)	437
PctI	GAATGC	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	72, 133, 229
Psp6I	CCWGG	1 cut(s)	361
PspEI	GGTNACC	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	189, 392
PspOMI	GGGCCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	187, 188
PstI	CTGCAG	1 cut(s)	75
RsaI	GTAC	4 cut(s)	59, 105, 375, 392
RsaNI	GTAC	4 cut(s)	58, 104, 374, 391
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	3 cut(s)	71, 132, 228
Sau96I	GGNCC	2 cut(s)	187, 188
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	3 cut(s)	191, 280, 454
SetI	ASST	3 cut(s)	260, 451, 502
SfaNI	GCATC	2 cut(s)	57, 496
SfcI	CTRYAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	232
SsiI	CCGC	1 cut(s)	132
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	2 cut(s)	192, 338
StyD4I	CCNGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	124
TasI	AATT	1 cut(s)	232
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	2 cut(s)	70, 227
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	68, 225
VneI	GTGCAC	1 cut(s)	450
XapI	RAATTY	1 cut(s)	232
XspI	CTAG	2 cut(s)	192, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.