Rroxscaffold_1G00029090

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008128
Physical Location & Seq
Reverse (-)
37554971 .. 37556775
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00029090.1

Sequence Viewer

Length: 996 bp
ATGGCTCCCACATTGCTGCTCCTTGTACTGTTGATGCCTGCTCTACAAATGACAGGTGCACAATCTGTGGGTGTCTGCTATGGACGAAATGGCGACAATTTACCTACTGATACAGAAGTTGTTGATCTGTACAAAAGCAATGGAATTGGAAGGATGAGGATATACGAGCCAAACCAAGCAACCTTGGAGGCCCTTAAAGGTTCTAACATAGAACTCATAGTCACCATCCTCAACAACCACCTTCAAGAGCTCACTGATGCGGCAGCAGCTACAAATTGGGTCCAGCAAAATGTGCAACCCTACGCGGCTGATGTCAAATTCAAGTACATTGCTGTTGGCAATGAAGTACACCCTGATGCTGCAGAGGCAAAATATCTTCTTCCTGCCATACAGAACATTCAGAACGCGGTTACAGCCGCCAATCTTCAAGTCAAAGTGTCAACAGCAATAGATACAACTCTTCAAGCTAACTTCCCTCCTTCAGATGGGGCATTCAGCGATGCTGCGAATTCATTCATCACCCCAGTTATAACCTTTTTAGGCAACAATGGATCACCACTTCTTGCCAATATATACCCCTACTTCGCCTATATCAATGACCCTGTTAACATAAAACTAGAGTATGCCTTATTCACTTCACCAGGGGTAGTAGTACAAGATGGTAGTAATGGTTACCAGAATCTCTTTGATGCTTTGTTGGATACTCTTTACTCTGCTCTTGAAAAAGCAGGGGCACCCAATATGGCGATAGTTGTATCCGAGAGCGGTTGGCCATCTGCAGGTAGTGATGCTGCAACTACTGGTAATGCAGGAACATACTACAGCAATTTGATCAAGCATGTGAAGACCGGGACTCCGAAGAGGCCTAATGGAGGTATCGAAACTTATCTGTTTGCCATGTTTGATGAAAACCAAAAGCCAGGTGACGAAGTTGAGAAACATTTTGGTCTCTTCTCCCCTAACAAACAGCCCAAGTACCAACTCACCTTTGGCTAG

Protein Analysis

331

Amino Acids

35.63

Weight (kDa)

4.76

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 23 - 330 5.8e-110 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 530
Acc36I ACCTGC 1 cut(s) 770
AccB1I GGYRCC 1 cut(s) 733
AccBSI CCGCTC 1 cut(s) 765
AccII CGCG 2 cut(s) 305, 407
AciI CCGC 5 cut(s) 260, 305, 407, 417, 765
AclWI GGATC 1 cut(s) 559
AcoI YGGCCR 1 cut(s) 770
AcsI RAATTY 2 cut(s) 317, 508
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 6 cut(s) 27, 131, 326, 348, 654, 977
AfiI CCNNNNNNNGG 3 cut(s) 485, 779, 872
AgsI TTSAA 5 cut(s) 245, 322, 428, 464, 722
AjnI CCWGG 2 cut(s) 640, 919
AluBI AGCT 3 cut(s) 250, 269, 467
AluI AGCT 3 cut(s) 250, 269, 467
Alw21I GWGCWC 2 cut(s) 61, 252
Alw26I GTCTC 1 cut(s) 953
Alw44I GTGCAC 1 cut(s) 57
AlwI GGATC 1 cut(s) 559
AoxI GGCC 3 cut(s) 189, 770, 863
ApaLI GTGCAC 1 cut(s) 57
ApeKI GCWGC 6 cut(s) 16, 263, 266, 359, 503, 791
ApoI RAATTY 2 cut(s) 317, 508
Asp700I GAANNNNTTC 1 cut(s) 512
AspS9I GGNCC 2 cut(s) 190, 280
AsuC2I CCSGG 1 cut(s) 850
AsuHPI GGTGA 6 cut(s) 214, 511, 546, 630, 935, 976
AvaII GGWCC 1 cut(s) 280
BaeGI GKGCMC 2 cut(s) 61, 736
BaeI ACNNNNGTAYC 2 cut(s) 102, 135
BalI TGGCCA 1 cut(s) 772
BanI GGYRCC 1 cut(s) 733
BanII GRGCYC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 851
Bbv12I GWGCWC 2 cut(s) 61, 252
BbvI GCAGC 6 cut(s) 3, 275, 278, 346, 490, 778
BccI CCATC 4 cut(s) 233, 479, 653, 781
BciT130I CCWGG 2 cut(s) 642, 921
BciVI GTATCC 2 cut(s) 694, 766
BclI TGATCA 1 cut(s) 831
BcnI CCSGG 1 cut(s) 850
BcoDI GTCTC 1 cut(s) 953
BfaI CTAG 2 cut(s) 617, 994
BfmI CTRYAG 3 cut(s) 360, 777, 820
BfuAI ACCTGC 1 cut(s) 770
BfuI GTATCC 2 cut(s) 694, 766
BisI GCNGC 9 cut(s) 17, 261, 264, 267, 306, 360, 417, 504, 792
BlsI GCNGC 9 cut(s) 18, 262, 265, 268, 307, 361, 418, 505, 793
Bme1390I CCNGG 3 cut(s) 642, 850, 921
Bme18I GGWCC 1 cut(s) 280
BmgT120I GGNCC 2 cut(s) 190, 280
BmiI GGNNCC 3 cut(s) 6, 281, 735
BmrFI CCNGG 3 cut(s) 642, 850, 921
BmrI ACTGGG 1 cut(s) 518
BmsI GCATC 6 cut(s) 24, 247, 346, 490, 679, 778
BmuI ACTGGG 1 cut(s) 518
BpiI GAAGAC 1 cut(s) 851
BpuMI CCSGG 1 cut(s) 850
BsaI GGTCTC 1 cut(s) 953
BsaJI CCNNGG 2 cut(s) 183, 641
BsaXI ACNNNNNCTCC 2 cut(s) 838, 868
Bsc4I CCNNNNNNNGG 3 cut(s) 485, 779, 872
Bse1I ACTGG 2 cut(s) 524, 805
Bse3DI GCAATG 4 cut(s) 11, 145, 327, 346
BseBI CCWGG 2 cut(s) 642, 921
BseDI CCNNGG 2 cut(s) 183, 641
BseGI GGATG 2 cut(s) 159, 225
BseLI CCNNNNNNNGG 3 cut(s) 485, 779, 872
BseMI GCAATG 4 cut(s) 11, 145, 327, 346
BseNI ACTGG 2 cut(s) 524, 805
BseSI GKGCMC 2 cut(s) 61, 736
BseXI GCAGC 6 cut(s) 3, 275, 278, 346, 490, 778
Bsh1236I CGCG 2 cut(s) 305, 407
BshFI GGCC 3 cut(s) 191, 772, 865
BshNI GGYRCC 1 cut(s) 733
BsiHKAI GWGCWC 2 cut(s) 61, 252
BsiSI CCGG 1 cut(s) 849
BslFI GGGAC 1 cut(s) 865
BslI CCNNNNNNNGG 3 cut(s) 485, 779, 872
BsmAI GTCTC 1 cut(s) 953
BsmFI GGGAC 1 cut(s) 865
BsmI GAATGC 1 cut(s) 491
BsnI GGCC 3 cut(s) 191, 772, 865
Bso31I GGTCTC 1 cut(s) 953
Bsp1286I GDGCHC 3 cut(s) 61, 252, 736
Bsp1407I TGTACA 1 cut(s) 129
Bsp143I GATC 3 cut(s) 124, 551, 831
BspACI CCGC 5 cut(s) 260, 305, 407, 417, 765
BspANI GGCC 3 cut(s) 191, 772, 865
BspFNI CGCG 2 cut(s) 305, 407
BspLI GGNNCC 3 cut(s) 6, 281, 735
BspMAI CTGCAG 2 cut(s) 364, 781
BspMI ACCTGC 1 cut(s) 770
BspPI GGATC 1 cut(s) 559
BspT107I GGYRCC 1 cut(s) 733
BspTNI GGTCTC 1 cut(s) 953
BsrBI CCGCTC 1 cut(s) 765
BsrDI GCAATG 4 cut(s) 11, 145, 327, 346
BsrGI TGTACA 1 cut(s) 129
BsrI ACTGG 2 cut(s) 524, 805
BssECI CCNNGG 2 cut(s) 183, 641
BssMI GATC 3 cut(s) 124, 551, 831
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 2 cut(s) 642, 921
Bst4CI ACNGT 1 cut(s) 30
Bst6I CTCTTC 3 cut(s) 465, 854, 956
BstAPI GCANNNNNTGC 1 cut(s) 292
BstAUI TGTACA 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 39
BstEII GGTNACC 1 cut(s) 671
BstENI CCTNNNNNAGG 1 cut(s) 870
BstF5I GGATG 2 cut(s) 159, 225
BstFNI CGCG 2 cut(s) 305, 407
BstKTI GATC 3 cut(s) 127, 554, 834
BstMAI GTCTC 1 cut(s) 953
BstMBI GATC 3 cut(s) 124, 551, 831
BstMWI GCNNNNNNNGC 4 cut(s) 266, 292, 365, 413
BstNI CCWGG 2 cut(s) 642, 921
BstNSI RCATGY 1 cut(s) 842
BstPI GGTNACC 1 cut(s) 671
BstSCI CCNGG 3 cut(s) 640, 848, 919
BstSFI CTRYAG 3 cut(s) 360, 777, 820
BstSLI GKGCMC 2 cut(s) 61, 736
BstUI CGCG 2 cut(s) 305, 407
BstV1I GCAGC 6 cut(s) 3, 275, 278, 346, 490, 778
BstV2I GAAGAC 1 cut(s) 851
BsuI GTATCC 2 cut(s) 694, 766
BsuRI GGCC 3 cut(s) 191, 772, 865
BtgZI GCGATG 1 cut(s) 513
BtsCI GGATG 2 cut(s) 159, 225
BtsIMutI CAGTG 1 cut(s) 252
BveI ACCTGC 1 cut(s) 770
Cac8I GCNNGC 1 cut(s) 39
Cfr13I GGNCC 2 cut(s) 190, 280
Csp6I GTAC 6 cut(s) 26, 130, 325, 347, 653, 976
CviAII CATG 2 cut(s) 839, 898
CviQI GTAC 6 cut(s) 26, 130, 325, 347, 653, 976
DpnI GATC 3 cut(s) 126, 553, 833
DpnII GATC 3 cut(s) 124, 551, 831
EaeI YGGCCR 1 cut(s) 770
Eam1104I CTCTTC 3 cut(s) 465, 854, 956
EarI CTCTTC 3 cut(s) 465, 854, 956
Ecl136II GAGCTC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 183
Eco147I AGGCCT 1 cut(s) 865
Eco24I GRGCYC 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 953
Eco47I GGWCC 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 465
Eco91I GGTNACC 1 cut(s) 671
EcoICRI GAGCTC 1 cut(s) 250
EcoNI CCTNNNNNAGG 1 cut(s) 870
EcoO109I RGGNCCY 1 cut(s) 190
EcoO65I GGTNACC 1 cut(s) 671
EcoRI GAATTC 1 cut(s) 508
EcoRII CCWGG 2 cut(s) 640, 919
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 2 cut(s) 842, 901
FaqI GGGAC 1 cut(s) 865
FatI CATG 2 cut(s) 838, 897
FbaI TGATCA 1 cut(s) 831
Fnu4HI GCNGC 9 cut(s) 17, 261, 264, 267, 306, 360, 417, 504, 792
FokI GGATG 2 cut(s) 166, 212
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 9 cut(s) 17, 261, 264, 267, 306, 360, 417, 504, 792
FspBI CTAG 2 cut(s) 617, 994
GluI GCNGC 9 cut(s) 17, 261, 264, 267, 306, 360, 417, 504, 792
HaeIII GGCC 3 cut(s) 191, 772, 865
HapII CCGG 1 cut(s) 849
Hin1II CATG 2 cut(s) 842, 901
HincII GTYRAC 2 cut(s) 441, 607
HindII GTYRAC 2 cut(s) 441, 607
HinfI GANTC 2 cut(s) 679, 853
HpaI GTTAAC 1 cut(s) 607
HpaII CCGG 1 cut(s) 849
HphI GGTGA 6 cut(s) 214, 511, 546, 630, 935, 976
Hpy166II GTNNAC 4 cut(s) 59, 349, 441, 607
Hpy188I TCNGA 4 cut(s) 402, 484, 760, 858
Hpy188III TCNNGA 2 cut(s) 245, 719
Hpy8I GTNNAC 4 cut(s) 59, 349, 441, 607
HpyAV CCTTC 3 cut(s) 144, 251, 489
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4V TGCA 6 cut(s) 59, 295, 362, 779, 794, 809
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 292, 365, 413
Hsp92II CATG 2 cut(s) 842, 901
Ksp22I TGATCA 1 cut(s) 831
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 3 cut(s) 124, 551, 831
LmnI GCTCC 2 cut(s) 10, 24
Lsp1109I GCAGC 6 cut(s) 3, 275, 278, 346, 490, 778
LweI GCATC 6 cut(s) 24, 247, 346, 490, 679, 778
MaeI CTAG 2 cut(s) 617, 994
MaeIII GTNAC 4 cut(s) 220, 409, 671, 923
MalI GATC 3 cut(s) 126, 553, 833
MbiI CCGCTC 1 cut(s) 765
MboI GATC 3 cut(s) 124, 551, 831
MboII GAAGA 7 cut(s) 368, 371, 416, 452, 856, 871, 943
MhlI GDGCHC 3 cut(s) 61, 252, 736
MlsI TGGCCA 1 cut(s) 772
MluCI AATT 6 cut(s) 97, 144, 274, 317, 508, 826
MluNI TGGCCA 1 cut(s) 772
MlyI GAGTC 1 cut(s) 847
MmeI TCCRAC 1 cut(s) 678
MnlI CCTC 7 cut(s) 150, 181, 239, 358, 486, 855, 866
Mox20I TGGCCA 1 cut(s) 772
MroXI GAANNNNTTC 1 cut(s) 512
MscI TGGCCA 1 cut(s) 772
MseI TTAA 2 cut(s) 195, 606
MslI CAYNNNNRTG 1 cut(s) 354
Msp20I TGGCCA 1 cut(s) 772
MspI CCGG 1 cut(s) 849
MspR9I CCNGG 3 cut(s) 642, 850, 921
Mva1269I GAATGC 1 cut(s) 491
MvaI CCWGG 2 cut(s) 642, 921
MvnI CGCG 2 cut(s) 305, 407
MwoI GCNNNNNNNGC 4 cut(s) 266, 292, 365, 413
NciI CCSGG 1 cut(s) 850
NdeII GATC 3 cut(s) 124, 551, 831
NlaIII CATG 2 cut(s) 842, 901
NlaIV GGNNCC 3 cut(s) 6, 281, 735
NmuCI GTSAC 2 cut(s) 220, 923
NspI RCATGY 1 cut(s) 842
PceI AGGCCT 1 cut(s) 865
PctI GAATGC 1 cut(s) 491
PdmI GAANNNNTTC 1 cut(s) 512
PfeI GAWTC 1 cut(s) 679
PkrI GCNGC 9 cut(s) 18, 262, 265, 268, 307, 361, 418, 505, 793
PleI GAGTC 1 cut(s) 847
PpsI GAGTC 1 cut(s) 847
PsiI TTATAA 1 cut(s) 530
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 640, 919
PspEI GGTNACC 1 cut(s) 671
PspGI CCWGG 2 cut(s) 640, 919
PspN4I GGNNCC 3 cut(s) 6, 281, 735
PspPI GGNCC 2 cut(s) 190, 280
PstI CTGCAG 2 cut(s) 364, 781
RsaI GTAC 6 cut(s) 27, 131, 326, 348, 654, 977
RsaNI GTAC 6 cut(s) 26, 130, 325, 347, 653, 976
RseI CAYNNNNRTG 1 cut(s) 354
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 195, 606
SatI GCNGC 9 cut(s) 17, 261, 264, 267, 306, 360, 417, 504, 792
Sau3AI GATC 3 cut(s) 124, 551, 831
Sau96I GGNCC 2 cut(s) 190, 280
SchI GAGTC 1 cut(s) 847
ScrFI CCNGG 3 cut(s) 642, 850, 921
SduI GDGCHC 3 cut(s) 61, 252, 736
SfaNI GCATC 6 cut(s) 24, 247, 346, 490, 679, 778
SfcI CTRYAG 3 cut(s) 360, 777, 820
SinI GGWCC 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 354
Sse9I AATT 6 cut(s) 97, 144, 274, 317, 508, 826
SseBI AGGCCT 1 cut(s) 865
SsiI CCGC 5 cut(s) 260, 305, 407, 417, 765
SspMI CTAG 2 cut(s) 617, 994
SstI GAGCTC 1 cut(s) 252
StuI AGGCCT 1 cut(s) 865
StyD4I CCNGG 3 cut(s) 640, 848, 919
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 879
TasI AATT 6 cut(s) 97, 144, 274, 317, 508, 826
TatI WGTACW 5 cut(s) 25, 129, 324, 346, 652
TauI GCSGC 3 cut(s) 263, 308, 419
TfiI GAWTC 1 cut(s) 679
Tru1I TTAA 2 cut(s) 195, 606
Tru9I TTAA 2 cut(s) 195, 606
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 2 cut(s) 220, 923
TseI GCWGC 6 cut(s) 16, 263, 266, 359, 503, 791
Tsp45I GTSAC 2 cut(s) 220, 923
TspDTI ATGAA 4 cut(s) 357, 501, 505, 921
TspRI CASTG 1 cut(s) 259
VneI GTGCAC 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 280
XagI CCTNNNNNAGG 1 cut(s) 870
XapI RAATTY 2 cut(s) 317, 508
XceI RCATGY 1 cut(s) 842
XcmI CCANNNNNNNNNTGG 1 cut(s) 986
XmnI GAANNNNTTC 1 cut(s) 512
XspI CTAG 2 cut(s) 617, 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.