Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008128

Physical Location & Seq

Genomic Coordinates Forward (+)

27443034 .. 27444050

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G270100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGTGGCCAATGATTTGCCACCACCAAGAGAAGTTATTGATATGTACAAATTGAATCAAATCGGACGAATGAGACTTTATGATCCAAACCCAGAAGCATTAGAGGCCCTTCGCAATTCTGGCATAGAAGTCCTAGTTGGAGTCAGGAATGAGGATCTTCAACAACTTGCAGGCTCTTACTCTGCTGCTGAGAACTGGGTGGCAACATACATTACGCCTTATTCACTGCAAGTCCAGTTTCGATACATAGTTGTTGGCAATGAGGTCTTCCCAGGAAACTCTGCCCGGTATGTCCTCCCAGCAATGGAAAACTTGCAAAATGCATTGAGCTTTGGAGACATTAAGGTCAGCACTTCAATTGCAACATCAGTCTTAGGTGTATCTTACCCTCCTTCAGCTGGAGCCTTTTCTCAAGACACCATAGAGTATATGGTGCCTATTGCTCAATACCTCAACAACATTGGTGCACCTTTATTAGCCAACGTGTACCCTTATTTTGCCTACATTGGAGACCCAATTGACATTTCACTGCCTTATGCATTGTTCACTTCTGAGACGGTCGTTGTGACAGATGGTGGTTTAAGTTATGATAACCTGCTTGACACCATGGTGGATGCATTATATGCAGCATTGGAGAAAGCAGGTGCGCCCCAAGTCCAAGTGGTGGTGTCTGAGACAGGCTGGCCCTCCAATGGGAATGGAGAGGTGACAACACCCGAGAATGCTCAAATCTACAATTCTAACCTAATAAGCCACGTGTTATCATCCCGTGGAACTCCAAGGCGGCCGGGGAACTCCACAGAGACTTACTTGTTTGCCATGTTTAATGAGAACATGAAGCCTGGTGCAGCAGTGGAGCAACACTGGGGTCTCTTTTATCCAAACAAGAGCCAAGTTTATCCTATCAATTTCCCAGTAAAAACATTAAAGCACAAAACTTGGTTTCAGAAACTTATGCAATGGATTATACAATCAGCTCAAAGCGCATTTGGAAAGCATATTTATGGTCATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0002376 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008422 GO:0008810 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009627 GO:0009628 GO:0009814 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

339

Amino Acids

37.36

Weight (kDa)

5.05

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008128)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11270 FvH4_3g28370 FvH4_3g28390 FvH4_4g30150
malus_domestica	MD03G1171500.v1.1 MD11G1189000.v1.1 MD12G1089500.v1.1
prunus_persica	Prupe.2G263400_v2.0.a1 Prupe.2G270100_v2.0.a1 Prupe.4G255600_v2.0.a1
pyrus_communis	pycom01g17970 pycom03g12870 pycom11g16540 pycom12g07370
rosa_chinensis	RchiOBHm_Chr5g0053361
rosa_laevigata	RLG00000034767
rosa_multiflora	Rmu_sc0001966.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029090
rosa_rugosa	Rorug05G0267400
rosa_samantha	Rh5AG340000 Rh5BG350400 Rh5CG376700 Rh5DG364300
rosa_wichuraiana	Rw5G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	632
AasI	GACNNNNNNGTC	1 cut(s)	344
Acc36I	ACCTGC	2 cut(s)	603, 632
AccB1I	GGYRCC	1 cut(s)	433
AccB7I	CCANNNNNTGG	1 cut(s)	664
AciI	CCGC	1 cut(s)	784
AclWI	GGATC	2 cut(s)	77, 162
AcoI	YGGCCR	2 cut(s)	6, 785
AcuI	CTGAAG	1 cut(s)	378
AcvI	CACGTG	1 cut(s)	757
AfaI	GTAC	2 cut(s)	47, 488
AfiI	CCNNNNNNNGG	5 cut(s)	304, 398, 664, 692, 693
AflIII	ACRYGT	2 cut(s)	483, 756
AgsI	TTSAA	3 cut(s)	55, 161, 357
AjnI	CCWGG	2 cut(s)	271, 841
AjuI	GAANNNNNNNTTGG	4 cut(s)	120, 152, 508, 540
AleI	CACNNNNGTG	1 cut(s)	608
AluBI	AGCT	3 cut(s)	330, 398, 977
AluI	AGCT	3 cut(s)	330, 398, 977
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	7 cut(s)	67, 330, 504, 548, 668, 797, 875
Alw44I	GTGCAC	1 cut(s)	465
AlwI	GGATC	2 cut(s)	77, 162
Ama87I	CYCGRG	1 cut(s)	716
AoxI	GGCC	4 cut(s)	6, 105, 683, 785
ApaLI	GTGCAC	1 cut(s)	465
ApeKI	GCWGC	3 cut(s)	185, 626, 848
AspLEI	GCGC	2 cut(s)	649, 986
AspS9I	GGNCC	2 cut(s)	106, 684
AsuC2I	CCSGG	2 cut(s)	286, 789
AsuHPI	GGTGA	1 cut(s)	718
AvaI	CYCGRG	1 cut(s)	716
BaeGI	GKGCMC	1 cut(s)	469
BalI	TGGCCA	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	433
BbrPI	CACGTG	1 cut(s)	757
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	3 cut(s)	172, 638, 860
BccI	CCATC	1 cut(s)	566
BciT130I	CCWGG	2 cut(s)	273, 843
BcnI	CCSGG	2 cut(s)	286, 789
BcoDI	GTCTC	7 cut(s)	67, 330, 504, 548, 668, 797, 875
BfaI	CTAG	1 cut(s)	134
BfuAI	ACCTGC	2 cut(s)	603, 632
BisI	GCNGC	4 cut(s)	186, 627, 785, 849
BlsI	GCNGC	4 cut(s)	187, 628, 786, 850
Bme1390I	CCNGG	4 cut(s)	273, 286, 789, 843
BmeT110I	CYCGRG	1 cut(s)	716
BmgT120I	GGNCC	2 cut(s)	106, 684
BmiI	GGNNCC	2 cut(s)	403, 435
BmrFI	CCNGG	4 cut(s)	273, 286, 789, 843
BmrI	ACTGGG	3 cut(s)	205, 874, 908
BmsI	GCATC	1 cut(s)	604
BmuI	ACTGGG	3 cut(s)	205, 874, 908
BpiI	GAAGAC	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	396
BpuMI	CCSGG	2 cut(s)	286, 789
BsaAI	YACGTR	1 cut(s)	757
BsaI	GGTCTC	2 cut(s)	504, 875
BsaJI	CCNNGG	5 cut(s)	271, 606, 769, 779, 788
Bsc4I	CCNNNNNNNGG	5 cut(s)	304, 398, 664, 692, 693
Bse1I	ACTGG	4 cut(s)	200, 235, 869, 914
Bse3DI	GCAATG	3 cut(s)	265, 309, 965
BseBI	CCWGG	2 cut(s)	273, 843
BseDI	CCNNGG	5 cut(s)	271, 606, 769, 779, 788
BseGI	GGATG	2 cut(s)	619, 764
BseLI	CCNNNNNNNGG	5 cut(s)	304, 398, 664, 692, 693
BseMI	GCAATG	3 cut(s)	265, 309, 965
BseMII	CTCAG	3 cut(s)	180, 543, 663
BseNI	ACTGG	4 cut(s)	200, 235, 869, 914
BseSI	GKGCMC	1 cut(s)	469
BseX3I	CGGCCG	1 cut(s)	785
BseXI	GCAGC	3 cut(s)	172, 638, 860
BseYI	CCCAGC	1 cut(s)	298
BsgI	GTGCAG	1 cut(s)	867
Bsh1285I	CGRYCG	2 cut(s)	561, 788
BshFI	GGCC	4 cut(s)	8, 107, 685, 787
BshNI	GGYRCC	1 cut(s)	433
BsiEI	CGRYCG	2 cut(s)	561, 788
BsiHKAI	GWGCWC	1 cut(s)	469
BsiHKCI	CYCGRG	1 cut(s)	716
BsiSI	CCGG	2 cut(s)	286, 788
BslI	CCNNNNNNNGG	5 cut(s)	304, 398, 664, 692, 693
BsmAI	GTCTC	7 cut(s)	67, 330, 504, 548, 668, 797, 875
BsmBI	CGTCTC	1 cut(s)	548
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	4 cut(s)	8, 107, 685, 787
Bso31I	GGTCTC	2 cut(s)	504, 875
BsoBI	CYCGRG	1 cut(s)	716
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp1407I	TGTACA	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	82, 154
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	1 cut(s)	784
BspANI	GGCC	4 cut(s)	8, 107, 685, 787
BspCNI	CTCAG	3 cut(s)	181, 544, 664
BspLI	GGNNCC	2 cut(s)	403, 435
BspMI	ACCTGC	2 cut(s)	603, 632
BspPI	GGATC	2 cut(s)	77, 162
BspT107I	GGYRCC	1 cut(s)	433
BspTNI	GGTCTC	2 cut(s)	504, 875
BsrDI	GCAATG	3 cut(s)	265, 309, 965
BsrGI	TGTACA	1 cut(s)	45
BsrI	ACTGG	4 cut(s)	200, 235, 869, 914
BssECI	CCNNGG	5 cut(s)	271, 606, 769, 779, 788
BssMI	GATC	2 cut(s)	82, 154
BssT1I	CCWWGG	2 cut(s)	606, 779
Bst2UI	CCWGG	2 cut(s)	273, 843
Bst4CI	ACNGT	1 cut(s)	559
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstAUI	TGTACA	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	757
BstC8I	GCNNGC	2 cut(s)	172, 683
BstDEI	CTNAG	4 cut(s)	189, 373, 552, 672
BstDSI	CCRYGG	2 cut(s)	606, 769
BstF5I	GGATG	2 cut(s)	619, 764
BstHHI	GCGC	2 cut(s)	649, 986
BstKTI	GATC	2 cut(s)	85, 157
BstMAI	GTCTC	7 cut(s)	67, 330, 504, 548, 668, 797, 875
BstMBI	GATC	2 cut(s)	82, 154
BstMCI	CGRYCG	2 cut(s)	561, 788
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 120, 623, 983
BstNI	CCWGG	2 cut(s)	273, 843
BstSCI	CCNGG	4 cut(s)	271, 284, 787, 841
BstSLI	GKGCMC	1 cut(s)	469
BstV1I	GCAGC	3 cut(s)	172, 638, 860
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BstZI	CGGCCG	1 cut(s)	785
BsuRI	GGCC	4 cut(s)	8, 107, 685, 787
BtgI	CCRYGG	2 cut(s)	606, 769
BtsCI	GGATG	2 cut(s)	619, 764
BtsI	GCAGTG	3 cut(s)	224, 527, 858
BtsIMutI	CAGTG	4 cut(s)	224, 527, 858, 862
BveI	ACCTGC	2 cut(s)	603, 632
Cac8I	GCNNGC	2 cut(s)	172, 683
CfoI	GCGC	2 cut(s)	649, 986
Cfr13I	GGNCC	2 cut(s)	106, 684
Csp6I	GTAC	2 cut(s)	46, 487
CviAII	CATG	3 cut(s)	607, 820, 835
CviQI	GTAC	2 cut(s)	46, 487
DdeI	CTNAG	4 cut(s)	189, 373, 552, 672
DpnI	GATC	2 cut(s)	84, 156
DpnII	GATC	2 cut(s)	82, 154
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
EaeI	YGGCCR	2 cut(s)	6, 785
EagI	CGGCCG	1 cut(s)	785
EclXI	CGGCCG	1 cut(s)	785
Eco130I	CCWWGG	2 cut(s)	606, 779
Eco31I	GGTCTC	2 cut(s)	504, 875
Eco52I	CGGCCG	1 cut(s)	785
Eco57I	CTGAAG	1 cut(s)	378
Eco72I	CACGTG	1 cut(s)	757
Eco88I	CYCGRG	1 cut(s)	716
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	271, 841
EcoT14I	CCWWGG	2 cut(s)	606, 779
EcoT22I	ATGCAT	3 cut(s)	325, 541, 619
ErhI	CCWWGG	2 cut(s)	606, 779
Esp3I	CGTCTC	1 cut(s)	548
FaeI	CATG	3 cut(s)	610, 823, 838
FatI	CATG	3 cut(s)	606, 819, 834
Fnu4HI	GCNGC	4 cut(s)	186, 627, 785, 849
FokI	GGATG	2 cut(s)	626, 751
Fsp4HI	GCNGC	4 cut(s)	186, 627, 785, 849
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	2 cut(s)	648, 985
GluI	GCNGC	4 cut(s)	186, 627, 785, 849
GsaI	CCCAGC	1 cut(s)	302
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	4 cut(s)	8, 107, 685, 787
HapII	CCGG	2 cut(s)	286, 788
HhaI	GCGC	2 cut(s)	649, 986
Hin1II	CATG	3 cut(s)	610, 823, 838
Hin6I	GCGC	2 cut(s)	647, 984
HinP1I	GCGC	2 cut(s)	647, 984
HinfI	GANTC	2 cut(s)	55, 141
HpaII	CCGG	2 cut(s)	286, 788
HphI	GGTGA	1 cut(s)	718
Hpy166II	GTNNAC	3 cut(s)	467, 487, 546
Hpy188I	TCNGA	4 cut(s)	65, 553, 673, 948
Hpy188III	TCNNGA	2 cut(s)	145, 413
Hpy8I	GTNNAC	3 cut(s)	467, 487, 546
HpyAV	CCTTC	2 cut(s)	119, 402
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4IV	ACGT	2 cut(s)	483, 756
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 120, 623, 983
HpyF3I	CTNAG	4 cut(s)	189, 373, 552, 672
HpySE526I	ACGT	2 cut(s)	483, 756
Hsp92II	CATG	3 cut(s)	610, 823, 838
HspAI	GCGC	2 cut(s)	647, 984
Kzo9I	GATC	2 cut(s)	82, 154
LmnI	GCTCC	2 cut(s)	401, 856
Lsp1109I	GCAGC	3 cut(s)	172, 638, 860
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	2 cut(s)	483, 756
MaeIII	GTNAC	2 cut(s)	565, 706
MalI	GATC	2 cut(s)	84, 156
MboI	GATC	2 cut(s)	82, 154
MboII	GAAGA	2 cut(s)	149, 259
MfeI	CAATTG	2 cut(s)	357, 516
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	469
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	7 cut(s)	50, 115, 357, 516, 736, 907, 1012
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	8 cut(s)	97, 145, 256, 305, 399, 461, 697, 697
Mox20I	TGGCCA	1 cut(s)	8
Mph1103I	ATGCAT	3 cut(s)	325, 541, 619
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	4 cut(s)	342, 581, 825, 926
MslI	CAYNNNNRTG	2 cut(s)	608, 1002
Msp20I	TGGCCA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	2 cut(s)	286, 788
MspR9I	CCNGG	4 cut(s)	273, 286, 789, 843
MunI	CAATTG	2 cut(s)	357, 516
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	2 cut(s)	273, 843
MwoI	GCNNNNNNNGC	4 cut(s)	104, 120, 623, 983
NciI	CCSGG	2 cut(s)	286, 789
NcoI	CCATGG	1 cut(s)	606
NdeII	GATC	2 cut(s)	82, 154
NlaIII	CATG	3 cut(s)	610, 823, 838
NlaIV	GGNNCC	2 cut(s)	403, 435
NmuCI	GTSAC	2 cut(s)	565, 706
NsiI	ATGCAT	3 cut(s)	325, 541, 619
OliI	CACNNNNGTG	1 cut(s)	608
PaqCI	CACCTGC	1 cut(s)	632
PctI	GAATGC	1 cut(s)	727
PfeI	GAWTC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	664
PkrI	GCNGC	4 cut(s)	187, 628, 786, 850
PleI	GAGTC	1 cut(s)	149
PmaCI	CACGTG	1 cut(s)	757
PmlI	CACGTG	1 cut(s)	757
PpsI	GAGTC	1 cut(s)	149
Ppu21I	YACGTR	1 cut(s)	757
Psp6I	CCWGG	2 cut(s)	271, 841
PspCI	CACGTG	1 cut(s)	757
PspFI	CCCAGC	1 cut(s)	298
PspGI	CCWGG	2 cut(s)	271, 841
PspN4I	GGNNCC	2 cut(s)	403, 435
PspPI	GGNCC	2 cut(s)	106, 684
PsuI	RGATCY	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	2 cut(s)	47, 488
RsaNI	GTAC	2 cut(s)	46, 487
RseI	CAYNNNNRTG	2 cut(s)	608, 1002
SaqAI	TTAA	4 cut(s)	342, 581, 825, 926
SatI	GCNGC	4 cut(s)	186, 627, 785, 849
Sau3AI	GATC	2 cut(s)	82, 154
Sau96I	GGNCC	2 cut(s)	106, 684
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	4 cut(s)	273, 286, 789, 843
SduI	GDGCHC	1 cut(s)	469
SfaNI	GCATC	1 cut(s)	604
SmiMI	CAYNNNNRTG	2 cut(s)	608, 1002
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
Sse9I	AATT	7 cut(s)	50, 115, 357, 516, 736, 907, 1012
SsiI	CCGC	1 cut(s)	784
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	4 cut(s)	271, 284, 787, 841
StyI	CCWWGG	2 cut(s)	606, 779
TaaI	ACNGT	1 cut(s)	559
TaiI	ACGT	2 cut(s)	486, 759
TaqI	TCGA	1 cut(s)	241
TasI	AATT	7 cut(s)	50, 115, 357, 516, 736, 907, 1012
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	1 cut(s)	787
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	4 cut(s)	342, 581, 825, 926
Tru9I	TTAA	4 cut(s)	342, 581, 825, 926
TscAI	CASTG	4 cut(s)	231, 534, 858, 869
TseFI	GTSAC	2 cut(s)	565, 706
TseI	GCWGC	3 cut(s)	185, 626, 848
Tsp45I	GTSAC	2 cut(s)	565, 706
TspDTI	ATGAA	1 cut(s)	851
TspRI	CASTG	4 cut(s)	231, 534, 858, 869
Van91I	CCANNNNNTGG	1 cut(s)	664
VneI	GTGCAC	1 cut(s)	465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XspI	CTAG	1 cut(s)	134
Zsp2I	ATGCAT	3 cut(s)	325, 541, 619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.