Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008128

Physical Location & Seq

Genomic Coordinates Forward (+)

13681433 .. 13683419

Gene Structure 1987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g12870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCTTCCATATTGCTACTACTTGTACTCTTGATGCCTGCCCTGGAAATAACAGGTGCACAATCTGTTGGTGTTTGCTATGGACGAAACGGCGACAATTTACCAGCTGAAGGAGAAGTGGTCGACTTGTACAAAAGCAATGGCATCGGACGGATGCGGATGTATGAACCAAATGAAGCAACCTTCCAAGCCCTAAGAGGTTCCAACATAGAACTCACTGTAACCATCCTCAACAACGAGCTTTCAGCCCTCAATGATGCTGCTGCTGCAACTGCCTGGGTCCAGAAAAACGTACAACCCTTTTCAGCCGATGTCCGATTCAAATACATCGCTGTTGGAAACGAAGTACACCCTGGTACTGCAGAGGCCGGGTTTCTCCTTCCTGCCATCAAAAACATCCACAGTGCAATTGTAGCGGCCAATCTCCAAGGCCAAATCAAAGTCTCAACAGCAATTGACACAAAGCTTGTGACCAACCCCTACCCCCCCTCAGATGGAATATATACTGAGGCTGCAAATCCATTCATAACACCAATCATCAATTTCCTCGTCAGCAATGGGGCCCCACTCCTTGTCAATGTGTACCCTTACTTCAGCTACAATGATGACCCTAATAACATAGACCTTGGCTATGCCTTGTTCACTTCACAAGGGGTCGTGGTACCAGACGGAACTCGATACCCTAGCCTCTTTGATGCTCTTTTGGATGCTCAGTACTCAGCTCTTGAAAAAGCTGGTGCACCAAATATAGAGATAGTCGTATCGGAGAGCGGTTGGCCTTCTGAAGGTGGTAATCAAGCAACCGCTCAGAACGCAGCCACATTCTACCAGAATTTGATCAGCCATGTGACGAGTAATACTGGGACTCCAAAGAGGCCTGGGAGAGCTATAGAGACTTATCTTTTTGCATTGTTTGATGAGAATCTCAAAGGCCCTGAACCAGTTGAGAAACACTTCGGAGTTTTCTCCCCTAACAAACAACCCAAGTACCAACTCACCTTCGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

336

Amino Acids

36.08

Weight (kDa)

4.82

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	23 - 334	5.7e-109	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008128)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11270 FvH4_3g28370 FvH4_3g28390 FvH4_4g30150
malus_domestica	MD03G1171500.v1.1 MD11G1189000.v1.1 MD12G1089500.v1.1
prunus_persica	Prupe.2G263400_v2.0.a1 Prupe.2G270100_v2.0.a1 Prupe.4G255600_v2.0.a1
pyrus_communis	pycom01g17970 pycom03g12870 pycom11g16540 pycom12g07370
rosa_chinensis	RchiOBHm_Chr5g0053361
rosa_laevigata	RLG00000034767
rosa_multiflora	Rmu_sc0001966.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029090
rosa_rugosa	Rorug05G0267400
rosa_samantha	Rh5AG340000 Rh5BG350400 Rh5CG376700 Rh5DG364300
rosa_wichuraiana	Rw5G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	661
AccB1I	GGYRCC	1 cut(s)	661
AccBSI	CCGCTC	2 cut(s)	771, 806
AccI	GTMKAC	1 cut(s)	123
AciI	CCGC	4 cut(s)	157, 416, 771, 804
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	832
AcuI	CTGAAG	3 cut(s)	129, 577, 804
AfaI	GTAC	9 cut(s)	27, 131, 294, 348, 358, 584, 663, 716, 989
AfiI	CCNNNNNNNGG	3 cut(s)	110, 494, 785
AgsI	TTSAA	2 cut(s)	322, 728
AjnI	CCWGG	4 cut(s)	42, 275, 352, 877
AluBI	AGCT	7 cut(s)	107, 241, 466, 597, 722, 734, 887
AluI	AGCT	7 cut(s)	107, 241, 466, 597, 722, 734, 887
Alw21I	GWGCWC	2 cut(s)	61, 742
Alw26I	GTCTC	2 cut(s)	448, 887
Alw44I	GTGCAC	2 cut(s)	57, 738
AoxI	GGCC	7 cut(s)	366, 417, 430, 561, 776, 875, 931
ApaI	GGGCCC	1 cut(s)	565
ApaLI	GTGCAC	2 cut(s)	57, 738
ApeKI	GCWGC	5 cut(s)	260, 263, 266, 512, 815
ApoI	RAATTY	1 cut(s)	832
Asp700I	GAANNNNTTC	1 cut(s)	953
Asp718I	GGTACC	1 cut(s)	661
AspS9I	GGNCC	4 cut(s)	280, 561, 562, 932
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	988
AvaII	GGWCC	1 cut(s)	280
BaeGI	GKGCMC	3 cut(s)	61, 565, 742
BaeI	ACNNNNGTAYC	2 cut(s)	971, 1004
BanI	GGYRCC	1 cut(s)	661
BanII	GRGCYC	1 cut(s)	565
BarI	GAAGNNNNNNTAC	2 cut(s)	575, 607
Bbv12I	GWGCWC	2 cut(s)	61, 742
BbvI	GCAGC	5 cut(s)	247, 250, 253, 499, 827
BccI	CCATC	3 cut(s)	233, 395, 488
BceAI	ACGGC	1 cut(s)	106
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	4 cut(s)	44, 277, 354, 879
BclI	TGATCA	1 cut(s)	837
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	2 cut(s)	448, 887
BfaI	CTAG	1 cut(s)	684
BfmI	CTRYAG	2 cut(s)	360, 888
BisI	GCNGC	6 cut(s)	261, 264, 267, 417, 513, 816
BlsI	GCNGC	6 cut(s)	262, 265, 268, 418, 514, 817
BmcAI	AGTACT	1 cut(s)	716
Bme1390I	CCNGG	5 cut(s)	44, 277, 354, 370, 879
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	4 cut(s)	280, 561, 562, 932
BmiI	GGNNCC	6 cut(s)	202, 281, 562, 563, 564, 663
BmrFI	CCNGG	5 cut(s)	44, 277, 354, 370, 879
BmrI	ACTGGG	1 cut(s)	870
BmsI	GCATC	6 cut(s)	24, 144, 153, 247, 685, 697
BmuI	ACTGGG	1 cut(s)	870
BpuMI	CCSGG	1 cut(s)	370
BsaBI	GATNNNNATC	1 cut(s)	921
BsaJI	CCNNGG	6 cut(s)	42, 276, 352, 427, 625, 878
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 850, 880
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 494, 785
Bse1I	ACTGG	2 cut(s)	865, 941
Bse3DI	GCAATG	2 cut(s)	145, 562
Bse8I	GATNNNNATC	1 cut(s)	921
BseBI	CCWGG	4 cut(s)	44, 277, 354, 879
BseDI	CCNNGG	6 cut(s)	42, 276, 352, 427, 625, 878
BseGI	GGATG	5 cut(s)	159, 165, 225, 396, 712
BseJI	GATNNNNATC	1 cut(s)	921
BseLI	CCNNNNNNNGG	3 cut(s)	110, 494, 785
BseMI	GCAATG	2 cut(s)	145, 562
BseMII	CTCAG	5 cut(s)	498, 504, 725, 732, 821
BseNI	ACTGG	2 cut(s)	865, 941
BseSI	GKGCMC	3 cut(s)	61, 565, 742
BseXI	GCAGC	5 cut(s)	247, 250, 253, 499, 827
BshFI	GGCC	7 cut(s)	368, 419, 432, 563, 778, 877, 933
BshNI	GGYRCC	1 cut(s)	661
BsiHKAI	GWGCWC	2 cut(s)	61, 742
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	1 cut(s)	877
BslI	CCNNNNNNNGG	3 cut(s)	110, 494, 785
BsmAI	GTCTC	2 cut(s)	448, 887
BsmFI	GGGAC	1 cut(s)	877
BsnI	GGCC	7 cut(s)	368, 419, 432, 563, 778, 877, 933
Bsp120I	GGGCCC	1 cut(s)	561
Bsp1286I	GDGCHC	3 cut(s)	61, 565, 742
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	837
BspACI	CCGC	4 cut(s)	157, 416, 771, 804
BspANI	GGCC	7 cut(s)	368, 419, 432, 563, 778, 877, 933
BspCNI	CTCAG	5 cut(s)	499, 503, 724, 731, 820
BspLI	GGNNCC	6 cut(s)	202, 281, 562, 563, 564, 663
BspMAI	CTGCAG	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	661
BsrBI	CCGCTC	2 cut(s)	771, 806
BsrDI	GCAATG	2 cut(s)	145, 562
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	865, 941
BssECI	CCNNGG	6 cut(s)	42, 276, 352, 427, 625, 878
BssMI	GATC	1 cut(s)	837
BssT1I	CCWWGG	2 cut(s)	427, 625
Bst2UI	CCWGG	4 cut(s)	44, 277, 354, 879
Bst4CI	ACNGT	2 cut(s)	220, 404
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	6 cut(s)	194, 490, 507, 711, 718, 807
BstENI	CCTNNNNNAGG	1 cut(s)	783
BstF5I	GGATG	5 cut(s)	159, 165, 225, 396, 712
BstKTI	GATC	1 cut(s)	840
BstMAI	GTCTC	2 cut(s)	448, 887
BstMBI	GATC	1 cut(s)	837
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 272, 413, 812
BstNI	CCWGG	4 cut(s)	44, 277, 354, 879
BstSCI	CCNGG	5 cut(s)	42, 275, 352, 368, 877
BstSFI	CTRYAG	2 cut(s)	360, 888
BstSLI	GKGCMC	3 cut(s)	61, 565, 742
BstV1I	GCAGC	5 cut(s)	247, 250, 253, 499, 827
BsuRI	GGCC	7 cut(s)	368, 419, 432, 563, 778, 877, 933
BtgZI	GCGATG	1 cut(s)	313
BtsCI	GGATG	5 cut(s)	159, 165, 225, 396, 712
BtsIMutI	CAGTG	2 cut(s)	216, 409
Cac8I	GCNNGC	1 cut(s)	39
Cfr13I	GGNCC	4 cut(s)	280, 561, 562, 932
Csp6I	GTAC	9 cut(s)	26, 130, 293, 347, 357, 583, 662, 715, 988
CviAII	CATG	1 cut(s)	845
CviQI	GTAC	9 cut(s)	26, 130, 293, 347, 357, 583, 662, 715, 988
DdeI	CTNAG	6 cut(s)	194, 490, 507, 711, 718, 807
DpnI	GATC	1 cut(s)	839
DpnII	GATC	1 cut(s)	837
EaeI	YGGCCR	1 cut(s)	417
Eco130I	CCWWGG	2 cut(s)	427, 625
Eco147I	AGGCCT	1 cut(s)	877
Eco24I	GRGCYC	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	280
Eco57I	CTGAAG	3 cut(s)	129, 577, 804
EcoNI	CCTNNNNNAGG	1 cut(s)	783
EcoO109I	RGGNCCY	3 cut(s)	561, 562, 932
EcoRII	CCWGG	4 cut(s)	42, 275, 352, 877
EcoT14I	CCWWGG	2 cut(s)	427, 625
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	2 cut(s)	427, 625
FaeI	CATG	1 cut(s)	848
FaqI	GGGAC	1 cut(s)	877
FatI	CATG	1 cut(s)	844
FbaI	TGATCA	1 cut(s)	837
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	6 cut(s)	261, 264, 267, 417, 513, 816
FokI	GGATG	5 cut(s)	166, 172, 212, 383, 719
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	6 cut(s)	261, 264, 267, 417, 513, 816
FspBI	CTAG	1 cut(s)	684
GluI	GCNGC	6 cut(s)	261, 264, 267, 417, 513, 816
HaeIII	GGCC	7 cut(s)	368, 419, 432, 563, 778, 877, 933
HapII	CCGG	1 cut(s)	369
Hin1II	CATG	1 cut(s)	848
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	3 cut(s)	318, 865, 922
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	1 cut(s)	988
Hpy166II	GTNNAC	6 cut(s)	59, 124, 349, 583, 642, 740
Hpy188I	TCNGA	8 cut(s)	149, 317, 493, 766, 784, 810, 959, 1004
Hpy188III	TCNNGA	3 cut(s)	31, 283, 725
Hpy8I	GTNNAC	6 cut(s)	59, 124, 349, 583, 642, 740
HpyAV	CCTTC	5 cut(s)	104, 193, 389, 779, 789
HpyCH4III	ACNGT	2 cut(s)	220, 404
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	7 cut(s)	59, 269, 362, 407, 515, 740, 908
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 272, 413, 812
HpyF3I	CTNAG	6 cut(s)	194, 490, 507, 711, 718, 807
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	848
KpnI	GGTACC	1 cut(s)	665
Ksp22I	TGATCA	1 cut(s)	837
Kzo9I	GATC	1 cut(s)	837
Lsp1109I	GCAGC	5 cut(s)	247, 250, 253, 499, 827
LweI	GCATC	6 cut(s)	24, 144, 153, 247, 685, 697
MaeI	CTAG	1 cut(s)	684
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	3 cut(s)	220, 469, 847
MalI	GATC	1 cut(s)	839
MbiI	CCGCTC	2 cut(s)	771, 806
MboI	GATC	1 cut(s)	837
MfeI	CAATTG	2 cut(s)	408, 453
MhlI	GDGCHC	3 cut(s)	61, 565, 742
MluCI	AATT	5 cut(s)	97, 408, 453, 541, 832
MlyI	GAGTC	1 cut(s)	859
MmeI	TCCRAC	2 cut(s)	228, 316
MnlI	CCTC	9 cut(s)	191, 239, 260, 358, 499, 502, 557, 698, 867
MroXI	GAANNNNTTC	1 cut(s)	953
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	5 cut(s)	44, 277, 354, 370, 879
MunI	CAATTG	2 cut(s)	408, 453
MvaI	CCWGG	4 cut(s)	44, 277, 354, 879
MwoI	GCNNNNNNNGC	4 cut(s)	266, 272, 413, 812
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	1 cut(s)	837
NlaIII	CATG	1 cut(s)	848
NlaIV	GGNNCC	6 cut(s)	202, 281, 562, 563, 564, 663
NmuCI	GTSAC	2 cut(s)	469, 847
PceI	AGGCCT	1 cut(s)	877
PdmI	GAANNNNTTC	1 cut(s)	953
PfeI	GAWTC	2 cut(s)	318, 922
PkrI	GCNGC	6 cut(s)	262, 265, 268, 418, 514, 817
PleI	GAGTC	1 cut(s)	859
PpsI	GAGTC	1 cut(s)	859
Psp6I	CCWGG	4 cut(s)	42, 275, 352, 877
PspGI	CCWGG	4 cut(s)	42, 275, 352, 877
PspN4I	GGNNCC	6 cut(s)	202, 281, 562, 563, 564, 663
PspOMI	GGGCCC	1 cut(s)	561
PspPI	GGNCC	4 cut(s)	280, 561, 562, 932
PstI	CTGCAG	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	9 cut(s)	27, 131, 294, 348, 358, 584, 663, 716, 989
RsaNI	GTAC	9 cut(s)	26, 130, 293, 347, 357, 583, 662, 715, 988
SalI	GTCGAC	1 cut(s)	122
SatI	GCNGC	6 cut(s)	261, 264, 267, 417, 513, 816
Sau3AI	GATC	1 cut(s)	837
Sau96I	GGNCC	4 cut(s)	280, 561, 562, 932
ScaI	AGTACT	1 cut(s)	716
SchI	GAGTC	1 cut(s)	859
ScrFI	CCNGG	5 cut(s)	44, 277, 354, 370, 879
SduI	GDGCHC	3 cut(s)	61, 565, 742
SfaNI	GCATC	6 cut(s)	24, 144, 153, 247, 685, 697
SfcI	CTRYAG	2 cut(s)	360, 888
SinI	GGWCC	1 cut(s)	280
Sse9I	AATT	5 cut(s)	97, 408, 453, 541, 832
SseBI	AGGCCT	1 cut(s)	877
SsiI	CCGC	4 cut(s)	157, 416, 771, 804
SspMI	CTAG	1 cut(s)	684
StuI	AGGCCT	1 cut(s)	877
StyD4I	CCNGG	5 cut(s)	42, 275, 352, 368, 877
StyI	CCWWGG	2 cut(s)	427, 625
TaaI	ACNGT	2 cut(s)	220, 404
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	123, 676
TasI	AATT	5 cut(s)	97, 408, 453, 541, 832
TatI	WGTACW	4 cut(s)	25, 129, 346, 714
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	2 cut(s)	318, 922
TscAI	CASTG	2 cut(s)	223, 409
TseFI	GTSAC	2 cut(s)	469, 847
TseI	GCWGC	5 cut(s)	260, 263, 266, 512, 815
Tsp45I	GTSAC	2 cut(s)	469, 847
TspDTI	ATGAA	3 cut(s)	180, 189, 514
TspGWI	ACGGA	2 cut(s)	166, 684
TspRI	CASTG	2 cut(s)	223, 409
VneI	GTGCAC	2 cut(s)	57, 738
VpaK11BI	GGWCC	1 cut(s)	280
XagI	CCTNNNNNAGG	1 cut(s)	783
XapI	RAATTY	1 cut(s)	832
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	953
XspI	CTAG	1 cut(s)	684
ZrmI	AGTACT	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.