MD11G1189000.v1.1

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0008128
Physical Location & Seq
Forward (+)
26603368 .. 26605412
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1189000.v1.1.491

Sequence Viewer

Length: 1047 bp
ATGCATTTTTCCAACGTATACAAAACTGGAAAAGCTCTCATGGCTTCCATATTGCTACTACTTGTAGTCTTGATGCCAGCCCTGCAAATAACAGGTGCACAATCTGTTGGTGTTTGTTATGGACGAAACGGCAACAATTTACCAGCTGAAGGAGAAGTGGTCGACTTGTACAAAAGCAATGGCATCGGGCGGATGAGGATCTATGAACCAAATGAAGCAACCTTGCAAGCCCTAAGAGGTTCCAACATAGAACTCACTGTCACCATCCTCAACAACGAGCTTCAAGCCCTCAATGATGCTGCAGCTGCAACTGCCTGGGTCCAGAAGAACGTACAACCCTATTCAGCTGATGTTAAATTCAAATACATCGCTGTTGGAAACGAAGTGCACCCCGATGCTGCAGAGGTCGGGTTTCTCCTGCCTGCCATCCAAAACATCCACAGTGCAATTGTAGCAGCCAATCTGCAAGGCCAAATCAAAGTCTCTACAGCAATTGACACAACTCTTGTGACCAATGCCTACCCTCCCTCCGATGGAGTATACACTGACCCTGCAAACCAATTCATAAAACCAGTCATCGACTTCCTCGTCAGCAATGGGGCCCCACTCCTTGTGAATGTGTACCCTTACTTCAGCTACAATGACAACCCTGGTAGCATAGACCTTGCCTATGCCTTGTTCACTTCACAAGGGGTTGTAGTGCCGGACGGGACTCGATACCCTAGCCTCTTTGACGCTCTTCTGGACGCTCAGTACGCAGCTCTTGAAAAAGCTGGTGCACCAAATGTGGAGATAGTCGTATCGGAGAGTGGTTGGCCTTCTGAAGGTGGAAATCAAGCAACCCCTCAGAACGCAGCCACATTCTACCAGAATTTGATCAAGCATGTGACGAGTACTACTGGGACTCCAAAGAGGCCTGGTAAAGCTATAGAGACTTATCTTTTTGCTATGTTTGATGAGAACCTCAAGGAAGGTAATGCAGATGAGAAACACTTTGGAATTTTCTCCCCTGACAAACAACCCAAGTACCAACTCACATTTGGATAG

Protein Analysis

349

Amino Acids

37.52

Weight (kDa)

4.97

Isoelectric Point (pI)

31.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 36 - 347 1.8e-108 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 587
AccI GTMKAC 3 cut(s) 18, 162, 540
AciI CCGC 1 cut(s) 190
AclWI GGATC 1 cut(s) 206
AcsI RAATTY 3 cut(s) 356, 871, 999
AcuI CTGAAG 3 cut(s) 168, 616, 843
AfaI GTAC 6 cut(s) 170, 333, 623, 755, 895, 1028
AfiI CCNNNNNNNGG 3 cut(s) 149, 533, 824
AgsI TTSAA 3 cut(s) 284, 361, 767
AjnI CCWGG 3 cut(s) 314, 649, 916
AluBI AGCT 9 cut(s) 35, 146, 280, 305, 347, 636, 761, 773, 926
AluI AGCT 9 cut(s) 35, 146, 280, 305, 347, 636, 761, 773, 926
Alw21I GWGCWC 3 cut(s) 100, 390, 781
Alw26I GTCTC 2 cut(s) 487, 926
Alw44I GTGCAC 3 cut(s) 96, 386, 777
AlwI GGATC 1 cut(s) 206
AoxI GGCC 4 cut(s) 469, 600, 815, 914
ApaI GGGCCC 1 cut(s) 604
ApaLI GTGCAC 3 cut(s) 96, 386, 777
ApeKI GCWGC 7 cut(s) 299, 302, 305, 398, 455, 758, 854
ApoI RAATTY 3 cut(s) 356, 871, 999
AspS9I GGNCC 3 cut(s) 319, 600, 601
AsuHPI GGTGA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 319
BaeGI GKGCMC 4 cut(s) 100, 390, 604, 781
BaeI ACNNNNGTAYC 2 cut(s) 1010, 1043
BanII GRGCYC 1 cut(s) 604
BarI GAAGNNNNNNTAC 2 cut(s) 614, 646
Bbv12I GWGCWC 3 cut(s) 100, 390, 781
BbvI GCAGC 7 cut(s) 286, 292, 314, 385, 467, 770, 866
BccI CCATC 3 cut(s) 272, 434, 527
BceAI ACGGC 1 cut(s) 145
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 3 cut(s) 316, 651, 918
BclI TGATCA 1 cut(s) 876
BcoDI GTCTC 2 cut(s) 487, 926
BfaI CTAG 1 cut(s) 723
BfmI CTRYAG 4 cut(s) 300, 399, 486, 927
BisI GCNGC 7 cut(s) 300, 303, 306, 399, 456, 759, 855
BlsI GCNGC 7 cut(s) 301, 304, 307, 400, 457, 760, 856
BmcAI AGTACT 1 cut(s) 895
Bme1390I CCNGG 3 cut(s) 316, 651, 918
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 3 cut(s) 319, 600, 601
BmiI GGNNCC 5 cut(s) 241, 320, 601, 602, 603
BmrFI CCNGG 3 cut(s) 316, 651, 918
BmrI ACTGGG 1 cut(s) 909
BmsI GCATC 4 cut(s) 63, 192, 286, 385
BmuI ACTGGG 1 cut(s) 909
BpuEI CTTGAG 1 cut(s) 950
BsaBI GATNNNNATC 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 315, 649
BsaXI ACNNNNNCTCC 6 cut(s) 144, 174, 512, 542, 889, 919
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 533, 824
Bse1I ACTGG 3 cut(s) 31, 572, 904
Bse3DI GCAATG 2 cut(s) 184, 601
Bse8I GATNNNNATC 1 cut(s) 197
BseBI CCWGG 3 cut(s) 316, 651, 918
BseDI CCNNGG 2 cut(s) 315, 649
BseGI GGATG 4 cut(s) 198, 264, 426, 435
BseJI GATNNNNATC 1 cut(s) 197
BseLI CCNNNNNNNGG 3 cut(s) 149, 533, 824
BseMI GCAATG 2 cut(s) 184, 601
BseMII CTCAG 2 cut(s) 764, 860
BseNI ACTGG 3 cut(s) 31, 572, 904
BseSI GKGCMC 4 cut(s) 100, 390, 604, 781
BseXI GCAGC 7 cut(s) 286, 292, 314, 385, 467, 770, 866
BshFI GGCC 4 cut(s) 471, 602, 817, 916
BsiHKAI GWGCWC 3 cut(s) 100, 390, 781
BsiSI CCGG 1 cut(s) 704
BslFI GGGAC 2 cut(s) 724, 916
BslI CCNNNNNNNGG 3 cut(s) 149, 533, 824
BsmAI GTCTC 2 cut(s) 487, 926
BsmFI GGGAC 2 cut(s) 724, 916
BsnI GGCC 4 cut(s) 471, 602, 817, 916
Bsp120I GGGCCC 1 cut(s) 600
Bsp1286I GDGCHC 4 cut(s) 100, 390, 604, 781
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 2 cut(s) 198, 876
BspACI CCGC 1 cut(s) 190
BspANI GGCC 4 cut(s) 471, 602, 817, 916
BspCNI CTCAG 2 cut(s) 763, 859
BspLI GGNNCC 5 cut(s) 241, 320, 601, 602, 603
BspMAI CTGCAG 2 cut(s) 304, 403
BspPI GGATC 1 cut(s) 206
BspQI GCTCTTC 1 cut(s) 744
BsrDI GCAATG 2 cut(s) 184, 601
BsrGI TGTACA 1 cut(s) 168
BsrI ACTGG 3 cut(s) 31, 572, 904
BssECI CCNNGG 2 cut(s) 315, 649
BssMI GATC 2 cut(s) 198, 876
BssNAI GTATAC 2 cut(s) 19, 541
Bst1107I GTATAC 2 cut(s) 19, 541
Bst2UI CCWGG 3 cut(s) 316, 651, 918
Bst4CI ACNGT 2 cut(s) 259, 443
Bst6I CTCTTC 1 cut(s) 744
BstAUI TGTACA 1 cut(s) 168
BstC8I GCNNGC 3 cut(s) 78, 228, 423
BstDEI CTNAG 3 cut(s) 233, 750, 846
BstENI CCTNNNNNAGG 1 cut(s) 822
BstF5I GGATG 4 cut(s) 198, 264, 426, 435
BstKTI GATC 2 cut(s) 201, 879
BstMAI GTCTC 2 cut(s) 487, 926
BstMBI GATC 2 cut(s) 198, 876
BstMWI GCNNNNNNNGC 6 cut(s) 41, 82, 305, 311, 452, 755
BstNI CCWGG 3 cut(s) 316, 651, 918
BstNSI RCATGY 1 cut(s) 887
BstSCI CCNGG 3 cut(s) 314, 649, 916
BstSFI CTRYAG 4 cut(s) 300, 399, 486, 927
BstSLI GKGCMC 4 cut(s) 100, 390, 604, 781
BstV1I GCAGC 7 cut(s) 286, 292, 314, 385, 467, 770, 866
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BstZ17I GTATAC 2 cut(s) 19, 541
BsuRI GGCC 4 cut(s) 471, 602, 817, 916
BtgZI GCGATG 1 cut(s) 352
BtsCI GGATG 4 cut(s) 198, 264, 426, 435
BtsIMutI CAGTG 3 cut(s) 255, 448, 543
Cac8I GCNNGC 3 cut(s) 78, 228, 423
Cfr13I GGNCC 3 cut(s) 319, 600, 601
CseI GACGC 2 cut(s) 743, 755
Csp6I GTAC 6 cut(s) 169, 332, 622, 754, 894, 1027
CviAII CATG 2 cut(s) 40, 884
CviQI GTAC 6 cut(s) 169, 332, 622, 754, 894, 1027
DdeI CTNAG 3 cut(s) 233, 750, 846
DpnI GATC 2 cut(s) 200, 878
DpnII GATC 2 cut(s) 198, 876
DrdI GACNNNNNNGTC 1 cut(s) 587
DseDI GACNNNNNNGTC 1 cut(s) 587
Eam1104I CTCTTC 1 cut(s) 744
EarI CTCTTC 1 cut(s) 744
EciI GGCGGA 1 cut(s) 205
Eco147I AGGCCT 1 cut(s) 916
Eco24I GRGCYC 1 cut(s) 604
Eco47I GGWCC 1 cut(s) 319
Eco57I CTGAAG 3 cut(s) 168, 616, 843
EcoNI CCTNNNNNAGG 1 cut(s) 822
EcoO109I RGGNCCY 2 cut(s) 600, 601
EcoRII CCWGG 3 cut(s) 314, 649, 916
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 604
FaeI CATG 2 cut(s) 43, 887
FaqI GGGAC 2 cut(s) 724, 916
FatI CATG 2 cut(s) 39, 883
FbaI TGATCA 1 cut(s) 876
FblI GTMKAC 3 cut(s) 18, 162, 540
Fnu4HI GCNGC 7 cut(s) 300, 303, 306, 399, 456, 759, 855
FokI GGATG 4 cut(s) 205, 251, 413, 422
FriOI GRGCYC 1 cut(s) 604
Fsp4HI GCNGC 7 cut(s) 300, 303, 306, 399, 456, 759, 855
FspBI CTAG 1 cut(s) 723
GluI GCNGC 7 cut(s) 300, 303, 306, 399, 456, 759, 855
HaeIII GGCC 4 cut(s) 471, 602, 817, 916
HapII CCGG 1 cut(s) 704
HgaI GACGC 2 cut(s) 743, 755
Hin1II CATG 2 cut(s) 43, 887
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 2 cut(s) 712, 904
HpaII CCGG 1 cut(s) 704
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 8 cut(s) 19, 98, 163, 388, 541, 622, 681, 779
Hpy188I TCNGA 4 cut(s) 532, 805, 823, 849
Hpy188III TCNNGA 4 cut(s) 70, 322, 743, 764
Hpy8I GTNNAC 8 cut(s) 19, 98, 163, 388, 541, 622, 681, 779
HpyAV CCTTC 4 cut(s) 143, 818, 828, 965
HpyCH4III ACNGT 2 cut(s) 259, 443
HpyCH4IV ACGT 2 cut(s) 15, 330
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 82, 305, 311, 452, 755
HpyF3I CTNAG 3 cut(s) 233, 750, 846
HpySE526I ACGT 2 cut(s) 15, 330
Hsp92II CATG 2 cut(s) 43, 887
Ksp22I TGATCA 1 cut(s) 876
Kzo9I GATC 2 cut(s) 198, 876
LguI GCTCTTC 1 cut(s) 744
Lsp1109I GCAGC 7 cut(s) 286, 292, 314, 385, 467, 770, 866
LweI GCATC 4 cut(s) 63, 192, 286, 385
MaeI CTAG 1 cut(s) 723
MaeII ACGT 2 cut(s) 15, 330
MaeIII GTNAC 3 cut(s) 259, 508, 886
MalI GATC 2 cut(s) 200, 878
MboI GATC 2 cut(s) 198, 876
MboII GAAGA 2 cut(s) 337, 731
MfeI CAATTG 2 cut(s) 447, 492
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 4 cut(s) 100, 390, 604, 781
MluCI AATT 7 cut(s) 136, 356, 447, 492, 560, 871, 999
MlyI GAGTC 2 cut(s) 706, 898
MmeI TCCRAC 3 cut(s) 36, 267, 355
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 393
MspA1I CMGCKG 3 cut(s) 146, 305, 347
MspI CCGG 1 cut(s) 704
MspR9I CCNGG 3 cut(s) 316, 651, 918
MunI CAATTG 2 cut(s) 447, 492
MvaI CCWGG 3 cut(s) 316, 651, 918
MwoI GCNNNNNNNGC 6 cut(s) 41, 82, 305, 311, 452, 755
NdeII GATC 2 cut(s) 198, 876
NlaIII CATG 2 cut(s) 43, 887
NlaIV GGNNCC 5 cut(s) 241, 320, 601, 602, 603
NmuCI GTSAC 3 cut(s) 259, 508, 886
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 887
PceI AGGCCT 1 cut(s) 916
PciSI GCTCTTC 1 cut(s) 744
PcsI WCGNNNNNNNCGW 1 cut(s) 585
PkrI GCNGC 7 cut(s) 301, 304, 307, 400, 457, 760, 856
PleI GAGTC 2 cut(s) 706, 898
PpsI GAGTC 2 cut(s) 706, 898
Psp6I CCWGG 3 cut(s) 314, 649, 916
PspGI CCWGG 3 cut(s) 314, 649, 916
PspN4I GGNNCC 5 cut(s) 241, 320, 601, 602, 603
PspOMI GGGCCC 1 cut(s) 600
PspPI GGNCC 3 cut(s) 319, 600, 601
PstI CTGCAG 2 cut(s) 304, 403
PsuI RGATCY 1 cut(s) 198
PvuII CAGCTG 3 cut(s) 146, 305, 347
RsaI GTAC 6 cut(s) 170, 333, 623, 755, 895, 1028
RsaNI GTAC 6 cut(s) 169, 332, 622, 754, 894, 1027
RseI CAYNNNNRTG 1 cut(s) 393
SalI GTCGAC 1 cut(s) 161
SapI GCTCTTC 1 cut(s) 744
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 7 cut(s) 300, 303, 306, 399, 456, 759, 855
Sau3AI GATC 2 cut(s) 198, 876
Sau96I GGNCC 3 cut(s) 319, 600, 601
ScaI AGTACT 1 cut(s) 895
SchI GAGTC 2 cut(s) 706, 898
ScrFI CCNGG 3 cut(s) 316, 651, 918
SduI GDGCHC 4 cut(s) 100, 390, 604, 781
SfaNI GCATC 4 cut(s) 63, 192, 286, 385
SfcI CTRYAG 4 cut(s) 300, 399, 486, 927
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 965
SmoI CTYRAG 1 cut(s) 965
Sse9I AATT 7 cut(s) 136, 356, 447, 492, 560, 871, 999
SseBI AGGCCT 1 cut(s) 916
SsiI CCGC 1 cut(s) 190
SspMI CTAG 1 cut(s) 723
StuI AGGCCT 1 cut(s) 916
StyD4I CCNGG 3 cut(s) 314, 649, 916
TaaI ACNGT 2 cut(s) 259, 443
TaiI ACGT 2 cut(s) 18, 333
TaqI TCGA 3 cut(s) 162, 579, 715
TasI AATT 7 cut(s) 136, 356, 447, 492, 560, 871, 999
TatI WGTACW 2 cut(s) 168, 893
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 3 cut(s) 262, 448, 550
TseFI GTSAC 3 cut(s) 259, 508, 886
TseI GCWGC 7 cut(s) 299, 302, 305, 398, 455, 758, 854
Tsp45I GTSAC 3 cut(s) 259, 508, 886
TspDTI ATGAA 3 cut(s) 219, 228, 553
TspRI CASTG 3 cut(s) 262, 448, 550
VneI GTGCAC 3 cut(s) 96, 386, 777
VpaK11BI GGWCC 1 cut(s) 319
XagI CCTNNNNNAGG 1 cut(s) 822
XapI RAATTY 3 cut(s) 356, 871, 999
XceI RCATGY 1 cut(s) 887
XcmI CCANNNNNNNNNTGG 1 cut(s) 1037
XmiI GTMKAC 3 cut(s) 18, 162, 540
XspI CTAG 1 cut(s) 723
ZrmI AGTACT 1 cut(s) 895
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.