Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008128

Physical Location & Seq

Genomic Coordinates Forward (+)

7708733 .. 7710748

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGAACTTTATATATGTCTCCAATAGCTTCATGCATTTTTCCAACATATATAAAACTGGAAGAGCTCTCATGGCTTCCATATTACTACTACTTGTAGTCTTGATGCCAGCCCTGCAAATAACAGGTGCACAATCTGTTGGTGTTTGTTATGGACGAAACGGCAACAATTTACCAGCTGAAGGAGAAGTGGTCGACTTGTACAAAAGCAATGGCATCGGACGGATGAGGATCTATGAACCAAATGAAGCAACCTTGCAAGCCCTTAGGGGTTCCAACATAGAACTCACAATCACCATCCTCAACAGCGAGCTTCCAGCCCTCAATGATGCAACTGCTGCAACTGCCTGGGTCCAGAAGAACGTACAACCCTATTCAGCTGATGTTCGATTCAAATACATCGCTGTTGGAAACGAAATACACCGCGATTCTGCAGAGGTTGGGTCTCTCCTGCCTGCCATCAAAAACATCCACAGTGCAATTGTAGCAGCCAATCTGCAAGGCCAAATCAAAGTCTCTACAGCAATTGACACAACTCTTGTGGCCAATCCCTTCCCTCCCTCCGATGGAGTATATGACGCTGCAAATCAATTCATACAACCAGTCATCGACTTCCTCGTCAGCAGTGGGGCCCCACTCCTTGTGAATGTGTACCCTTACTTCAGCTACACTGATAACCCTAACATAGACCTTGCCTATGCCTTATTCACTTCGCAAGGGGTTGTAGTGCCGGATGGGACTCGATACCCTAGCCTCTTTGATGCTCTTCTGGACGCTCAGTACGCAGCTCTTGAAAAAGCTGGTGCACCAAATATGGAGATAGTCGTATCGGAGAGCGGTTGGCCTTCTGAAGGTGGTGATCGATCAACCCCTGAGAACGCAGCCACATTCTACCAGAGATCGATCAACCATGTGACGAGTACTACTGGGACTCCAAAGAGGCGTGGTAAAGCTATAGAGACTTATCTTTTTGCAATGTTTGATGAAAATCTCAAGGACGGTAAACCAGTTGAGAAACACTTTGGAGTTTTCTCCCCTAACAAACAACCCAAGTACCAACTCACATTTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

357

Amino Acids

38.73

Weight (kDa)

5.44

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008128)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11270 FvH4_3g28370 FvH4_3g28390 FvH4_4g30150
malus_domestica	MD03G1171500.v1.1 MD11G1189000.v1.1 MD12G1089500.v1.1
prunus_persica	Prupe.2G263400_v2.0.a1 Prupe.2G270100_v2.0.a1 Prupe.4G255600_v2.0.a1
pyrus_communis	pycom01g17970 pycom03g12870 pycom11g16540 pycom12g07370
rosa_chinensis	RchiOBHm_Chr5g0053361
rosa_laevigata	RLG00000034767
rosa_multiflora	Rmu_sc0001966.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029090
rosa_rugosa	Rorug05G0267400
rosa_samantha	Rh5AG340000 Rh5BG350400 Rh5CG376700 Rh5DG364300
rosa_wichuraiana	Rw5G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	614
AccBSI	CCGCTC	1 cut(s)	834
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	1 cut(s)	423
AciI	CCGC	2 cut(s)	421, 834
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	540
AcuI	CTGAAG	3 cut(s)	198, 643, 867
AfaI	GTAC	6 cut(s)	200, 363, 650, 779, 919, 1052
AfiI	CCNNNNNNNGG	3 cut(s)	179, 563, 848
AgsI	TTSAA	2 cut(s)	391, 791
AjnI	CCWGG	1 cut(s)	344
AluBI	AGCT	9 cut(s)	27, 65, 176, 310, 377, 663, 785, 797, 950
AluI	AGCT	9 cut(s)	27, 65, 176, 310, 377, 663, 785, 797, 950
Alw21I	GWGCWC	3 cut(s)	67, 130, 805
Alw26I	GTCTC	4 cut(s)	22, 447, 517, 950
Alw44I	GTGCAC	2 cut(s)	126, 801
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	4 cut(s)	499, 540, 627, 839
ApaI	GGGCCC	1 cut(s)	631
ApaLI	GTGCAC	2 cut(s)	126, 801
ApeKI	GCWGC	5 cut(s)	335, 485, 578, 782, 878
AspS9I	GGNCC	3 cut(s)	349, 627, 628
AsuHPI	GGTGA	2 cut(s)	283, 866
AvaII	GGWCC	1 cut(s)	349
AxyI	CCTNAGG	1 cut(s)	263
BaeGI	GKGCMC	3 cut(s)	130, 631, 805
BaeI	ACNNNNGTAYC	2 cut(s)	1034, 1067
BalI	TGGCCA	1 cut(s)	542
BanII	GRGCYC	2 cut(s)	67, 631
BarI	GAAGNNNNNNTAC	2 cut(s)	641, 673
Bbv12I	GWGCWC	3 cut(s)	67, 130, 805
BbvI	GCAGC	5 cut(s)	322, 497, 565, 794, 890
BccI	CCATC	4 cut(s)	302, 464, 557, 725
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BciT130I	CCWGG	1 cut(s)	346
BcoDI	GTCTC	4 cut(s)	22, 447, 517, 950
BfaI	CTAG	1 cut(s)	747
BfmI	CTRYAG	3 cut(s)	429, 516, 951
BisI	GCNGC	5 cut(s)	336, 486, 579, 783, 879
BlsI	GCNGC	5 cut(s)	337, 487, 580, 784, 880
BmcAI	AGTACT	1 cut(s)	919
Bme1390I	CCNGG	1 cut(s)	346
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	3 cut(s)	349, 627, 628
BmiI	GGNNCC	5 cut(s)	271, 350, 628, 629, 630
BmrFI	CCNGG	1 cut(s)	346
BmrI	ACTGGG	1 cut(s)	933
BmsI	GCATC	4 cut(s)	93, 222, 316, 748
BmuI	ACTGGG	1 cut(s)	933
BpuEI	CTTGAG	1 cut(s)	974
Bsa29I	ATCGAT	2 cut(s)	859, 899
BsaBI	GATNNNNATC	2 cut(s)	227, 984
BsaI	GGTCTC	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	345
BsaXI	ACNNNNNCTCC	4 cut(s)	174, 204, 913, 943
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 563, 848
Bse1I	ACTGG	4 cut(s)	61, 599, 928, 1004
Bse21I	CCTNAGG	1 cut(s)	263
Bse3DI	GCAATG	2 cut(s)	214, 978
Bse8I	GATNNNNATC	2 cut(s)	227, 984
BseBI	CCWGG	1 cut(s)	346
BseCI	ATCGAT	2 cut(s)	859, 899
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	4 cut(s)	228, 294, 465, 736
BseJI	GATNNNNATC	2 cut(s)	227, 984
BseLI	CCNNNNNNNGG	3 cut(s)	179, 563, 848
BseMI	GCAATG	2 cut(s)	214, 978
BseMII	CTCAG	2 cut(s)	788, 861
BseNI	ACTGG	4 cut(s)	61, 599, 928, 1004
BseSI	GKGCMC	3 cut(s)	130, 631, 805
BseXI	GCAGC	5 cut(s)	322, 497, 565, 794, 890
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	4 cut(s)	501, 542, 629, 841
BshVI	ATCGAT	2 cut(s)	859, 899
BsiHKAI	GWGCWC	3 cut(s)	67, 130, 805
BsiSI	CCGG	1 cut(s)	728
BslFI	GGGAC	2 cut(s)	748, 940
BslI	CCNNNNNNNGG	3 cut(s)	179, 563, 848
BsmAI	GTCTC	4 cut(s)	22, 447, 517, 950
BsmFI	GGGAC	2 cut(s)	748, 940
BsnI	GGCC	4 cut(s)	501, 542, 629, 841
Bso31I	GGTCTC	1 cut(s)	447
Bsp120I	GGGCCC	1 cut(s)	627
Bsp1286I	GDGCHC	4 cut(s)	67, 130, 631, 805
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	5 cut(s)	228, 856, 860, 896, 900
BspACI	CCGC	2 cut(s)	421, 834
BspANI	GGCC	4 cut(s)	501, 542, 629, 841
BspCNI	CTCAG	2 cut(s)	787, 862
BspDI	ATCGAT	2 cut(s)	859, 899
BspFNI	CGCG	1 cut(s)	423
BspLI	GGNNCC	5 cut(s)	271, 350, 628, 629, 630
BspMAI	CTGCAG	1 cut(s)	433
BspPI	GGATC	1 cut(s)	236
BspQI	GCTCTTC	2 cut(s)	55, 768
BspTNI	GGTCTC	1 cut(s)	447
BsrBI	CCGCTC	1 cut(s)	834
BsrDI	GCAATG	2 cut(s)	214, 978
BsrGI	TGTACA	1 cut(s)	198
BsrI	ACTGG	4 cut(s)	61, 599, 928, 1004
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	5 cut(s)	228, 856, 860, 896, 900
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	2 cut(s)	473, 998
Bst6I	CTCTTC	2 cut(s)	55, 768
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstAUI	TGTACA	1 cut(s)	198
BstC8I	GCNNGC	4 cut(s)	108, 258, 308, 453
BstDEI	CTNAG	3 cut(s)	263, 774, 870
BstENI	CCTNNNNNAGG	1 cut(s)	846
BstF5I	GGATG	4 cut(s)	228, 294, 465, 736
BstFNI	CGCG	1 cut(s)	423
BstKTI	GATC	5 cut(s)	231, 859, 863, 899, 903
BstMAI	GTCTC	4 cut(s)	22, 447, 517, 950
BstMBI	GATC	5 cut(s)	228, 856, 860, 896, 900
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 112, 335, 341, 482, 779
BstNI	CCWGG	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	344
BstSFI	CTRYAG	3 cut(s)	429, 516, 951
BstSLI	GKGCMC	3 cut(s)	130, 631, 805
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	5 cut(s)	322, 497, 565, 794, 890
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
Bsu15I	ATCGAT	2 cut(s)	859, 899
Bsu36I	CCTNAGG	1 cut(s)	263
BsuRI	GGCC	4 cut(s)	501, 542, 629, 841
BsuTUI	ATCGAT	2 cut(s)	859, 899
BtgZI	GCGATG	1 cut(s)	382
BtsCI	GGATG	4 cut(s)	228, 294, 465, 736
BtsI	GCAGTG	1 cut(s)	628
BtsIMutI	CAGTG	3 cut(s)	478, 628, 666
Cac8I	GCNNGC	4 cut(s)	108, 258, 308, 453
Cfr13I	GGNCC	3 cut(s)	349, 627, 628
ClaI	ATCGAT	2 cut(s)	859, 899
CseI	GACGC	2 cut(s)	584, 779
Csp6I	GTAC	6 cut(s)	199, 362, 649, 778, 918, 1051
CspCI	CAANNNNNGTGG	2 cut(s)	519, 554
CviAII	CATG	3 cut(s)	31, 70, 908
CviQI	GTAC	6 cut(s)	199, 362, 649, 778, 918, 1051
DdeI	CTNAG	3 cut(s)	263, 774, 870
DpnI	GATC	5 cut(s)	230, 858, 862, 898, 902
DpnII	GATC	5 cut(s)	228, 856, 860, 896, 900
DrdI	GACNNNNNNGTC	1 cut(s)	614
DseDI	GACNNNNNNGTC	1 cut(s)	614
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	2 cut(s)	55, 768
EarI	CTCTTC	2 cut(s)	55, 768
Ecl136II	GAGCTC	1 cut(s)	65
Eco24I	GRGCYC	2 cut(s)	67, 631
Eco31I	GGTCTC	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	65
Eco57I	CTGAAG	3 cut(s)	198, 643, 867
Eco81I	CCTNAGG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	65
EcoNI	CCTNNNNNAGG	1 cut(s)	846
EcoO109I	RGGNCCY	2 cut(s)	627, 628
EcoRII	CCWGG	1 cut(s)	344
EcoT22I	ATGCAT	1 cut(s)	36
EcoT38I	GRGCYC	2 cut(s)	67, 631
FaeI	CATG	3 cut(s)	34, 73, 911
FaqI	GGGAC	2 cut(s)	748, 940
FatI	CATG	3 cut(s)	30, 69, 907
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	5 cut(s)	336, 486, 579, 783, 879
FokI	GGATG	4 cut(s)	235, 281, 452, 743
FriOI	GRGCYC	2 cut(s)	67, 631
Fsp4HI	GCNGC	5 cut(s)	336, 486, 579, 783, 879
FspBI	CTAG	1 cut(s)	747
GluI	GCNGC	5 cut(s)	336, 486, 579, 783, 879
HaeIII	GGCC	4 cut(s)	501, 542, 629, 841
HapII	CCGG	1 cut(s)	728
HgaI	GACGC	2 cut(s)	584, 779
Hin1II	CATG	3 cut(s)	34, 73, 911
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	4 cut(s)	387, 425, 736, 928
HpaII	CCGG	1 cut(s)	728
HphI	GGTGA	2 cut(s)	283, 866
Hpy166II	GTNNAC	5 cut(s)	128, 193, 649, 803, 1001
Hpy188I	TCNGA	4 cut(s)	218, 562, 829, 847
Hpy188III	TCNNGA	4 cut(s)	100, 352, 767, 788
Hpy8I	GTNNAC	5 cut(s)	128, 193, 649, 803, 1001
HpyAV	CCTTC	4 cut(s)	173, 559, 842, 852
HpyCH4III	ACNGT	2 cut(s)	473, 998
HpyCH4IV	ACGT	1 cut(s)	360
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 112, 335, 341, 482, 779
HpyF3I	CTNAG	3 cut(s)	263, 774, 870
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	3 cut(s)	34, 73, 911
Kzo9I	GATC	5 cut(s)	228, 856, 860, 896, 900
LguI	GCTCTTC	2 cut(s)	55, 768
Lsp1109I	GCAGC	5 cut(s)	322, 497, 565, 794, 890
LweI	GCATC	4 cut(s)	93, 222, 316, 748
MaeI	CTAG	1 cut(s)	747
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	910
MalI	GATC	5 cut(s)	230, 858, 862, 898, 902
MbiI	CCGCTC	1 cut(s)	834
MboI	GATC	5 cut(s)	228, 856, 860, 896, 900
MboII	GAAGA	3 cut(s)	72, 367, 755
MfeI	CAATTG	2 cut(s)	477, 522
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	4 cut(s)	67, 130, 631, 805
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	4 cut(s)	166, 477, 522, 587
MluNI	TGGCCA	1 cut(s)	542
MlyI	GAGTC	2 cut(s)	730, 922
MmeI	TCCRAC	3 cut(s)	66, 297, 385
MnlI	CCTC	9 cut(s)	219, 308, 329, 427, 564, 568, 623, 761, 930
Mox20I	TGGCCA	1 cut(s)	542
Mph1103I	ATGCAT	1 cut(s)	36
MscI	TGGCCA	1 cut(s)	542
Msp20I	TGGCCA	1 cut(s)	542
MspA1I	CMGCKG	2 cut(s)	176, 377
MspI	CCGG	1 cut(s)	728
MspR9I	CCNGG	1 cut(s)	346
MunI	CAATTG	2 cut(s)	477, 522
MvaI	CCWGG	1 cut(s)	346
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	6 cut(s)	71, 112, 335, 341, 482, 779
NdeII	GATC	5 cut(s)	228, 856, 860, 896, 900
NlaIII	CATG	3 cut(s)	34, 73, 911
NlaIV	GGNNCC	5 cut(s)	271, 350, 628, 629, 630
NmuCI	GTSAC	1 cut(s)	910
NsiI	ATGCAT	1 cut(s)	36
PciSI	GCTCTTC	2 cut(s)	55, 768
PcsI	WCGNNNNNNNCGW	1 cut(s)	612
PfeI	GAWTC	2 cut(s)	387, 425
PkrI	GCNGC	5 cut(s)	337, 487, 580, 784, 880
PleI	GAGTC	2 cut(s)	730, 922
PpsI	GAGTC	2 cut(s)	730, 922
Psp124BI	GAGCTC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	5 cut(s)	271, 350, 628, 629, 630
PspOMI	GGGCCC	1 cut(s)	627
PspPI	GGNCC	3 cut(s)	349, 627, 628
PstI	CTGCAG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	228
PvuII	CAGCTG	2 cut(s)	176, 377
RsaI	GTAC	6 cut(s)	200, 363, 650, 779, 919, 1052
RsaNI	GTAC	6 cut(s)	199, 362, 649, 778, 918, 1051
SacI	GAGCTC	1 cut(s)	67
SalI	GTCGAC	1 cut(s)	191
SapI	GCTCTTC	2 cut(s)	55, 768
SatI	GCNGC	5 cut(s)	336, 486, 579, 783, 879
Sau3AI	GATC	5 cut(s)	228, 856, 860, 896, 900
Sau96I	GGNCC	3 cut(s)	349, 627, 628
ScaI	AGTACT	1 cut(s)	919
SchI	GAGTC	2 cut(s)	730, 922
ScrFI	CCNGG	1 cut(s)	346
SduI	GDGCHC	4 cut(s)	67, 130, 631, 805
SfaNI	GCATC	4 cut(s)	93, 222, 316, 748
SfcI	CTRYAG	3 cut(s)	429, 516, 951
SinI	GGWCC	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	989
SmoI	CTYRAG	1 cut(s)	989
Sse9I	AATT	4 cut(s)	166, 477, 522, 587
SsiI	CCGC	2 cut(s)	421, 834
SspMI	CTAG	1 cut(s)	747
SstI	GAGCTC	1 cut(s)	67
StyD4I	CCNGG	1 cut(s)	344
TaaI	ACNGT	2 cut(s)	473, 998
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	6 cut(s)	192, 385, 606, 739, 859, 899
TasI	AATT	4 cut(s)	166, 477, 522, 587
TatI	WGTACW	2 cut(s)	198, 917
TfiI	GAWTC	2 cut(s)	387, 425
TscAI	CASTG	3 cut(s)	478, 628, 673
TseFI	GTSAC	1 cut(s)	910
TseI	GCWGC	5 cut(s)	335, 485, 578, 782, 878
Tsp45I	GTSAC	1 cut(s)	910
TspDTI	ATGAA	6 cut(s)	17, 19, 249, 258, 580, 996
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	3 cut(s)	478, 628, 673
VneI	GTGCAC	2 cut(s)	126, 801
VpaK11BI	GGWCC	1 cut(s)	349
XagI	CCTNNNNNAGG	1 cut(s)	846
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1061
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	1 cut(s)	747
ZrmI	AGTACT	1 cut(s)	919
Zsp2I	ATGCAT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.