Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008128

Physical Location & Seq

Genomic Coordinates Forward (+)

29928380 .. 29931200

Gene Structure 2821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCTCCCATATTGCTGCTCCTTGTTCTGTTTATGCCTGCTCTACAGATAACAGGTGCACAATCTGCGGGTGTCTGCTATGGACGAAATGGCAACAATTTACCTTCTGATACAGAAGTTGTTGATTTGTACAAAAGCAATGGAATTGGAAGGATGAGGATTTATGAGCCAAACCAAGCAACCTTGGAAGCCCTTAGAGGTTCCAACATAGAACTCATGGTCACCATCCTCAACAACAACCTGCAAGCGCTTACTGATGCTGCAGCAGCTACAGATTGGGTCCAGAAAAATGTGCAACCCTACTCGGCTGATGTCAAGTTCAAGTACATTGCCGTTGGAAATGAAGTACACCCTGATGCTGCAGAAGCTAAATATCTTCTTCCTGCCATACAGAATATTCAGAATGCGGTAACAGCTGCTAATCTACAAGGCCAAATCAAAGTTTCAACAGCAATAGATACAACATTTTTACTCCCTGACTTTGTCCTTCCTTCAAATGGGGCATTCAGCGATGCTGCAAATTCATTCATTACCCCAATTATCACCTTTTTGAGCAACAATGGAGCACCACTTCTTGTCAATATATACCCCTACTTCGCCTATATTGGTGACCCAGTTAACATAAAACTAGAATATGCCTTGTTCACTTCACCAGGGGTAGAACTACAGGATGGTAGTAACGGGTACCAGAACATCTTTGATGCTCTCTTGGACACTCATTACTCTGCTCTTGAAAAAGCAGGGGCTCCCAATATGGCGATAGTTGTATCCGAGAGTGGTTGGCCATCTGAAGGTGGTGATGCTGCAACTACTGGTAATGCAGGAACTTACTACAGCAAATTGATCAATCATGTGAAGACCGGGACTCCAAAGAGACCAAATGGAGCTATTGAAACTTATCTGTTTGCCATGTTTGATGAAAACCTGAAGGATGGTGCAGAAGTTGAGAAACATTTTGGTATCTTCTCCCCTAACAAACAGCCCAAGTACCAACTCACCTTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

336

Amino Acids

36.14

Weight (kDa)

4.79

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	24 - 334	2.2e-105	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008128)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11270 FvH4_3g28370 FvH4_3g28390 FvH4_4g30150
malus_domestica	MD03G1171500.v1.1 MD11G1189000.v1.1 MD12G1089500.v1.1
prunus_persica	Prupe.2G263400_v2.0.a1 Prupe.2G270100_v2.0.a1 Prupe.4G255600_v2.0.a1
pyrus_communis	pycom01g17970 pycom03g12870 pycom11g16540 pycom12g07370
rosa_chinensis	RchiOBHm_Chr5g0053361
rosa_laevigata	RLG00000034767
rosa_multiflora	Rmu_sc0001966.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029090
rosa_rugosa	Rorug05G0267400
rosa_samantha	Rh5AG340000 Rh5BG350400 Rh5CG376700 Rh5DG364300
rosa_wichuraiana	Rw5G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	249
Acc65I	GGTACC	1 cut(s)	684
AccB1I	GGYRCC	1 cut(s)	684
AciI	CCGC	2 cut(s)	68, 407
AcoI	YGGCCR	1 cut(s)	782
AcsI	RAATTY	1 cut(s)	520
AcuI	CTGAAG	2 cut(s)	810, 947
AfaI	GTAC	5 cut(s)	131, 326, 348, 686, 989
AfeI	AGCGCT	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	497, 791
AgsI	TTSAA	5 cut(s)	322, 447, 495, 734, 893
AjnI	CCWGG	1 cut(s)	652
AluBI	AGCT	4 cut(s)	269, 368, 416, 887
AluI	AGCT	4 cut(s)	269, 368, 416, 887
Alw21I	GWGCWC	2 cut(s)	61, 568
Alw26I	GTCTC	1 cut(s)	868
Alw44I	GTGCAC	1 cut(s)	57
Aor51HI	AGCGCT	1 cut(s)	249
AoxI	GGCC	2 cut(s)	430, 782
ApaLI	GTGCAC	1 cut(s)	57
ApeKI	GCWGC	8 cut(s)	16, 260, 263, 266, 359, 416, 515, 803
ApoI	RAATTY	1 cut(s)	520
Asp718I	GGTACC	1 cut(s)	684
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	280
AsuC2I	CCSGG	1 cut(s)	862
AsuHPI	GGTGA	6 cut(s)	214, 535, 620, 642, 809, 988
AvaII	GGWCC	1 cut(s)	280
BaeGI	GKGCMC	1 cut(s)	61
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BalI	TGGCCA	1 cut(s)	784
BanI	GGYRCC	1 cut(s)	684
BanII	GRGCYC	1 cut(s)	748
BbsI	GAAGAC	1 cut(s)	863
Bbv12I	GWGCWC	2 cut(s)	61, 568
BbvI	GCAGC	8 cut(s)	3, 247, 275, 278, 346, 403, 502, 790
BccI	CCATC	4 cut(s)	233, 665, 793, 926
BceAI	ACGGC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	654
BciVI	GTATCC	1 cut(s)	778
BclI	TGATCA	1 cut(s)	843
BcnI	CCSGG	1 cut(s)	862
BcoDI	GTCTC	1 cut(s)	868
BfaI	CTAG	2 cut(s)	629, 1006
BfmI	CTRYAG	6 cut(s)	44, 261, 270, 360, 665, 832
BfoI	RGCGCY	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	249
BfuI	GTATCC	1 cut(s)	778
BisI	GCNGC	8 cut(s)	17, 261, 264, 267, 360, 417, 516, 804
BlsI	GCNGC	8 cut(s)	18, 262, 265, 268, 361, 418, 517, 805
Bme1390I	CCNGG	2 cut(s)	654, 862
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	5 cut(s)	6, 202, 281, 686, 747
BmrFI	CCNGG	2 cut(s)	654, 862
BmrI	ACTGGG	1 cut(s)	608
BmsI	GCATC	5 cut(s)	247, 346, 502, 691, 790
BmuI	ACTGGG	1 cut(s)	608
BpiI	GAAGAC	1 cut(s)	863
BpuMI	CCSGG	1 cut(s)	862
BsaI	GGTCTC	1 cut(s)	868
BsaJI	CCNNGG	2 cut(s)	183, 653
BsaXI	ACNNNNNCTCC	2 cut(s)	850, 880
Bsc4I	CCNNNNNNNGG	2 cut(s)	497, 791
Bse1I	ACTGG	2 cut(s)	614, 817
Bse3DI	GCAATG	2 cut(s)	145, 327
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	183, 653
BseGI	GGATG	4 cut(s)	159, 225, 676, 937
BseLI	CCNNNNNNNGG	2 cut(s)	497, 791
BseMI	GCAATG	2 cut(s)	145, 327
BseNI	ACTGG	2 cut(s)	614, 817
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	8 cut(s)	3, 247, 275, 278, 346, 403, 502, 790
BsgI	GTGCAG	1 cut(s)	957
BshFI	GGCC	2 cut(s)	432, 784
BshNI	GGYRCC	1 cut(s)	684
BsiHKAI	GWGCWC	2 cut(s)	61, 568
BsiSI	CCGG	1 cut(s)	861
BslFI	GGGAC	1 cut(s)	877
BslI	CCNNNNNNNGG	2 cut(s)	497, 791
BsmAI	GTCTC	1 cut(s)	868
BsmFI	GGGAC	1 cut(s)	877
BsmI	GAATGC	2 cut(s)	409, 503
BsnI	GGCC	2 cut(s)	432, 784
Bso31I	GGTCTC	1 cut(s)	868
Bsp1286I	GDGCHC	3 cut(s)	61, 568, 748
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	843
BspACI	CCGC	2 cut(s)	68, 407
BspANI	GGCC	2 cut(s)	432, 784
BspLI	GGNNCC	5 cut(s)	6, 202, 281, 686, 747
BspMAI	CTGCAG	2 cut(s)	265, 364
BspMI	ACCTGC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	684
BspTNI	GGTCTC	1 cut(s)	868
BsrDI	GCAATG	2 cut(s)	145, 327
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	614, 817
BssECI	CCNNGG	2 cut(s)	183, 653
BssMI	GATC	1 cut(s)	843
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	654
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	39, 246
BstDEI	CTNAG	1 cut(s)	194
BstEII	GGTNACC	2 cut(s)	220, 608
BstF5I	GGATG	4 cut(s)	159, 225, 676, 937
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	1 cut(s)	846
BstMAI	GTCTC	1 cut(s)	868
BstMBI	GATC	1 cut(s)	843
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 266, 365, 413
BstNI	CCWGG	1 cut(s)	654
BstPI	GGTNACC	2 cut(s)	220, 608
BstSCI	CCNGG	2 cut(s)	652, 860
BstSFI	CTRYAG	6 cut(s)	44, 261, 270, 360, 665, 832
BstSLI	GKGCMC	1 cut(s)	61
BstV1I	GCAGC	8 cut(s)	3, 247, 275, 278, 346, 403, 502, 790
BstV2I	GAAGAC	1 cut(s)	863
BsuI	GTATCC	1 cut(s)	778
BsuRI	GGCC	2 cut(s)	432, 784
BtgZI	GCGATG	1 cut(s)	525
BtsCI	GGATG	4 cut(s)	159, 225, 676, 937
BveI	ACCTGC	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	39, 246
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	280
Csp6I	GTAC	5 cut(s)	130, 325, 347, 685, 988
CviAII	CATG	3 cut(s)	217, 851, 910
CviQI	GTAC	5 cut(s)	130, 325, 347, 685, 988
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	1 cut(s)	845
DpnII	GATC	1 cut(s)	843
EaeI	YGGCCR	1 cut(s)	782
Eco130I	CCWWGG	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	748
Eco31I	GGTCTC	1 cut(s)	868
Eco47I	GGWCC	1 cut(s)	280
Eco47III	AGCGCT	1 cut(s)	249
Eco57I	CTGAAG	2 cut(s)	810, 947
Eco91I	GGTNACC	2 cut(s)	220, 608
EcoO65I	GGTNACC	2 cut(s)	220, 608
EcoRII	CCWGG	1 cut(s)	652
EcoT14I	CCWWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	748
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	3 cut(s)	220, 854, 913
FaqI	GGGAC	1 cut(s)	877
FatI	CATG	3 cut(s)	216, 850, 909
FauI	CCCGC	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	843
Fnu4HI	GCNGC	8 cut(s)	17, 261, 264, 267, 360, 417, 516, 804
FokI	GGATG	4 cut(s)	166, 212, 683, 944
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	8 cut(s)	17, 261, 264, 267, 360, 417, 516, 804
FspBI	CTAG	2 cut(s)	629, 1006
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	8 cut(s)	17, 261, 264, 267, 360, 417, 516, 804
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	432, 784
HapII	CCGG	1 cut(s)	861
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	3 cut(s)	220, 854, 913
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	1 cut(s)	865
HpaI	GTTAAC	1 cut(s)	619
HpaII	CCGG	1 cut(s)	861
HphI	GGTGA	6 cut(s)	214, 535, 620, 642, 809, 988
Hpy166II	GTNNAC	4 cut(s)	59, 349, 619, 645
Hpy188I	TCNGA	4 cut(s)	109, 402, 772, 790
Hpy188III	TCNNGA	2 cut(s)	283, 731
Hpy8I	GTNNAC	4 cut(s)	59, 349, 619, 645
HpyAV	CCTTC	6 cut(s)	114, 144, 497, 501, 785, 922
HpyCH4V	TGCA	9 cut(s)	59, 244, 263, 295, 362, 518, 806, 821, 938
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 266, 365, 413
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	3 cut(s)	220, 854, 913
HspAI	GCGC	1 cut(s)	248
KpnI	GGTACC	1 cut(s)	688
Ksp22I	TGATCA	1 cut(s)	843
KspAI	GTTAAC	1 cut(s)	619
Kzo9I	GATC	1 cut(s)	843
LmnI	GCTCC	5 cut(s)	10, 24, 563, 751, 884
Lsp1109I	GCAGC	8 cut(s)	3, 247, 275, 278, 346, 403, 502, 790
LweI	GCATC	5 cut(s)	247, 346, 502, 691, 790
MaeI	CTAG	2 cut(s)	629, 1006
MaeIII	GTNAC	4 cut(s)	220, 409, 608, 677
MalI	GATC	1 cut(s)	845
MboI	GATC	1 cut(s)	843
MboII	GAAGA	4 cut(s)	368, 371, 868, 955
MhlI	GDGCHC	3 cut(s)	61, 568, 748
MlsI	TGGCCA	1 cut(s)	784
MluCI	AATT	5 cut(s)	97, 144, 520, 537, 839
MluNI	TGGCCA	1 cut(s)	784
MlyI	GAGTC	1 cut(s)	859
MmeI	TCCRAC	2 cut(s)	228, 316
MnlI	CCTC	3 cut(s)	150, 191, 239
Mox20I	TGGCCA	1 cut(s)	784
MscI	TGGCCA	1 cut(s)	784
MseI	TTAA	1 cut(s)	618
MslI	CAYNNNNRTG	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	784
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	1 cut(s)	861
MspR9I	CCNGG	2 cut(s)	654, 862
Mva1269I	GAATGC	2 cut(s)	409, 503
MvaI	CCWGG	1 cut(s)	654
MwoI	GCNNNNNNNGC	4 cut(s)	65, 266, 365, 413
NciI	CCSGG	1 cut(s)	862
NdeII	GATC	1 cut(s)	843
NlaIII	CATG	3 cut(s)	220, 854, 913
NlaIV	GGNNCC	5 cut(s)	6, 202, 281, 686, 747
NmeAIII	GCCGAG	1 cut(s)	284
NmuCI	GTSAC	2 cut(s)	220, 608
PctI	GAATGC	2 cut(s)	409, 503
PflFI	GACNNNGTC	1 cut(s)	482
PkrI	GCNGC	8 cut(s)	18, 262, 265, 268, 361, 418, 517, 805
PleI	GAGTC	1 cut(s)	859
PpsI	GAGTC	1 cut(s)	859
Psp6I	CCWGG	1 cut(s)	652
PspEI	GGTNACC	2 cut(s)	220, 608
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	5 cut(s)	6, 202, 281, 686, 747
PspPI	GGNCC	1 cut(s)	280
PstI	CTGCAG	2 cut(s)	265, 364
PsyI	GACNNNGTC	1 cut(s)	482
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	5 cut(s)	131, 326, 348, 686, 989
RsaNI	GTAC	5 cut(s)	130, 325, 347, 685, 988
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	8 cut(s)	17, 261, 264, 267, 360, 417, 516, 804
Sau3AI	GATC	1 cut(s)	843
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	1 cut(s)	859
ScrFI	CCNGG	2 cut(s)	654, 862
SduI	GDGCHC	3 cut(s)	61, 568, 748
SfaNI	GCATC	5 cut(s)	247, 346, 502, 691, 790
SfcI	CTRYAG	6 cut(s)	44, 261, 270, 360, 665, 832
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	5 cut(s)	97, 144, 520, 537, 839
SsiI	CCGC	2 cut(s)	68, 407
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	2 cut(s)	629, 1006
StyD4I	CCNGG	2 cut(s)	652, 860
StyI	CCWWGG	1 cut(s)	183
TasI	AATT	5 cut(s)	97, 144, 520, 537, 839
TatI	WGTACW	3 cut(s)	129, 324, 346
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TseFI	GTSAC	2 cut(s)	220, 608
TseI	GCWGC	8 cut(s)	16, 260, 263, 266, 359, 416, 515, 803
Tsp45I	GTSAC	2 cut(s)	220, 608
TspDTI	ATGAA	4 cut(s)	357, 513, 517, 933
Tth111I	GACNNNGTC	1 cut(s)	482
VneI	GTGCAC	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	1 cut(s)	520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	998
XspI	CTAG	2 cut(s)	629, 1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.