Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008128

Physical Location & Seq

Genomic Coordinates Reverse (-)

11168774 .. 11170676

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1089500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCATTTTTCCAACATATATAAAACTGGAAAAGCACTCATGGCTTCCATATTGCTACTACTTGTTGTAGTCTTGATGCCAGCCCTGCAAATAACAGGTGCACAATCTGTTGGTGTTTGTTATGGACGAAACGGCAACAATTTACCAGCTGAAGGAGAAGTGGTTGACTTGTACAAAAGCAATGGCATCGGACGGATGAGGATCTATGAACCAAATGAAGCAACCTTGCAAGCCCTTAGAGGTTCCAACATAGAACTCACAGTCACCATCCTCAACAGCGAGCTTCCAGCCCTCAATGATGCTGCTGCTGCAACTGCCTGGGTCCAGAAGAACGTACAACCCTATTCAGCTGATGTTCGATTCAAATACATCGCTGTTGGAAACGAAATACACCACGATTCTGCAGAGGTCGGGTCTCTCCTGCCTGCCATCCAAAACATCCACAGTGCAATTGTAGCAGCCAATCTGCAAGGCCAAATCAAAGTCTCTACAGCAATTGACACAACTCTTGTGGCCAATCCCTTCCCTCCCTCTGATGGAGTATATGACGCTGCAAATCAATTCATAAAACCAGTCATCGACTTCCTCGTCAGCAGTGGAGCCCCACTCCTTGTGAATGTGTACCCTTACTTCAGCTACACTGATAACCTTGCCTATGCCTTGTTCACTTCGCAAGGGGTTGTAGTGCCGGATGGGACTCGATACCCTAGCCTCTTTGACGCTCTTCTGGACGCTCAGTACGCTGCTCTTGAAAAAGCTGGTGCACCAAATATGGAGATAGTCGTATCAGAGAGCGGTTGGCCTTCTGAAGGTGGTGATCAAGCAACCCCTCAGAACGCAGCCACATTCTACCAGAATTTGATCAACCATGTGACGAGTACTACTGGGACTCCAAAGAGGCCTGGTAAAGCTATAGAGACTTATCTTTTTGCAATGTTTGATGAAAATCTCAAGGACGGTAAACCAGTTGAGAAACACTTTGGTGTTTTCTCCCCTAACAAACAGCCCAAGTACCAACTCACATTTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

344

Amino Acids

36.98

Weight (kDa)

5.25

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	37 - 342	3.2e-105	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008128)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11270 FvH4_3g28370 FvH4_3g28390 FvH4_4g30150
malus_domestica	MD03G1171500.v1.1 MD11G1189000.v1.1 MD12G1089500.v1.1
prunus_persica	Prupe.2G263400_v2.0.a1 Prupe.2G270100_v2.0.a1 Prupe.4G255600_v2.0.a1
pyrus_communis	pycom01g17970 pycom03g12870 pycom11g16540 pycom12g07370
rosa_chinensis	RchiOBHm_Chr5g0053361
rosa_laevigata	RLG00000034767
rosa_multiflora	Rmu_sc0001966.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029090
rosa_rugosa	Rorug05G0267400
rosa_samantha	Rh5AG340000 Rh5BG350400 Rh5CG376700 Rh5DG364300
rosa_wichuraiana	Rw5G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	587
AccBSI	CCGCTC	1 cut(s)	795
AciI	CCGC	1 cut(s)	795
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	513
AcsI	RAATTY	1 cut(s)	856
AcuI	CTGAAG	3 cut(s)	171, 616, 828
AfaI	GTAC	6 cut(s)	173, 336, 623, 740, 880, 1013
AfiI	CCNNNNNNNGG	3 cut(s)	152, 536, 809
AgsI	TTSAA	2 cut(s)	364, 752
AjnI	CCWGG	2 cut(s)	317, 901
AleI	CACNNNNGTG	1 cut(s)	981
AluBI	AGCT	6 cut(s)	149, 283, 350, 636, 758, 911
AluI	AGCT	6 cut(s)	149, 283, 350, 636, 758, 911
Alw21I	GWGCWC	2 cut(s)	103, 766
Alw26I	GTCTC	3 cut(s)	420, 490, 911
Alw44I	GTGCAC	2 cut(s)	99, 762
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	4 cut(s)	472, 513, 800, 899
ApaLI	GTGCAC	2 cut(s)	99, 762
ApeKI	GCWGC	7 cut(s)	302, 305, 308, 458, 551, 743, 839
ApoI	RAATTY	1 cut(s)	856
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	2 cut(s)	256, 827
AvaII	GGWCC	1 cut(s)	322
BaeGI	GKGCMC	2 cut(s)	103, 766
BalI	TGGCCA	1 cut(s)	515
BanII	GRGCYC	1 cut(s)	604
BarI	GAAGNNNNNNTAC	2 cut(s)	614, 646
Bbv12I	GWGCWC	2 cut(s)	103, 766
BbvI	GCAGC	7 cut(s)	289, 292, 295, 470, 538, 730, 851
BccI	CCATC	4 cut(s)	275, 437, 530, 686
BceAI	ACGGC	1 cut(s)	148
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	2 cut(s)	319, 903
BclI	TGATCA	2 cut(s)	817, 861
BcoDI	GTCTC	3 cut(s)	420, 490, 911
BfaI	CTAG	1 cut(s)	708
BfmI	CTRYAG	3 cut(s)	402, 489, 912
BisI	GCNGC	7 cut(s)	303, 306, 309, 459, 552, 744, 840
BlsI	GCNGC	7 cut(s)	304, 307, 310, 460, 553, 745, 841
BmcAI	AGTACT	1 cut(s)	880
Bme1390I	CCNGG	2 cut(s)	319, 903
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	3 cut(s)	244, 323, 601
BmrFI	CCNGG	2 cut(s)	319, 903
BmrI	ACTGGG	1 cut(s)	894
BmsI	GCATC	3 cut(s)	66, 195, 289
BmuI	ACTGGG	1 cut(s)	894
BplI	GAGNNNNNCTC	2 cut(s)	591, 623
BpuEI	CTTGAG	1 cut(s)	935
BsaBI	GATNNNNATC	2 cut(s)	200, 945
BsaI	GGTCTC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	318
BsaXI	ACNNNNNCTCC	4 cut(s)	147, 177, 874, 904
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 536, 809
Bse1I	ACTGG	4 cut(s)	31, 572, 889, 965
Bse3DI	GCAATG	2 cut(s)	187, 939
Bse8I	GATNNNNATC	2 cut(s)	200, 945
BseBI	CCWGG	2 cut(s)	319, 903
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	5 cut(s)	201, 267, 429, 438, 697
BseJI	GATNNNNATC	2 cut(s)	200, 945
BseLI	CCNNNNNNNGG	3 cut(s)	152, 536, 809
BseMI	GCAATG	2 cut(s)	187, 939
BseMII	CTCAG	2 cut(s)	749, 845
BseNI	ACTGG	4 cut(s)	31, 572, 889, 965
BseSI	GKGCMC	2 cut(s)	103, 766
BseXI	GCAGC	7 cut(s)	289, 292, 295, 470, 538, 730, 851
BshFI	GGCC	4 cut(s)	474, 515, 802, 901
BsiHKAI	GWGCWC	2 cut(s)	103, 766
BsiSI	CCGG	1 cut(s)	689
BslFI	GGGAC	2 cut(s)	709, 901
BslI	CCNNNNNNNGG	3 cut(s)	152, 536, 809
BsmAI	GTCTC	3 cut(s)	420, 490, 911
BsmFI	GGGAC	2 cut(s)	709, 901
BsnI	GGCC	4 cut(s)	474, 515, 802, 901
Bso31I	GGTCTC	1 cut(s)	420
Bsp1286I	GDGCHC	3 cut(s)	103, 604, 766
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	201, 817, 861
BspACI	CCGC	1 cut(s)	795
BspANI	GGCC	4 cut(s)	474, 515, 802, 901
BspCNI	CTCAG	2 cut(s)	748, 844
BspLI	GGNNCC	3 cut(s)	244, 323, 601
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	1 cut(s)	209
BspQI	GCTCTTC	1 cut(s)	729
BspTNI	GGTCTC	1 cut(s)	420
BsrBI	CCGCTC	1 cut(s)	795
BsrDI	GCAATG	2 cut(s)	187, 939
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	4 cut(s)	31, 572, 889, 965
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	3 cut(s)	201, 817, 861
Bst2UI	CCWGG	2 cut(s)	319, 903
Bst4CI	ACNGT	3 cut(s)	262, 446, 959
Bst6I	CTCTTC	1 cut(s)	729
BstAUI	TGTACA	1 cut(s)	171
BstC8I	GCNNGC	4 cut(s)	81, 231, 281, 426
BstDEI	CTNAG	3 cut(s)	236, 735, 831
BstENI	CCTNNNNNAGG	1 cut(s)	807
BstF5I	GGATG	5 cut(s)	201, 267, 429, 438, 697
BstKTI	GATC	3 cut(s)	204, 820, 864
BstMAI	GTCTC	3 cut(s)	420, 490, 911
BstMBI	GATC	3 cut(s)	201, 817, 861
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 85, 308, 314, 455, 740
BstNI	CCWGG	2 cut(s)	319, 903
BstSCI	CCNGG	2 cut(s)	317, 901
BstSFI	CTRYAG	3 cut(s)	402, 489, 912
BstSLI	GKGCMC	2 cut(s)	103, 766
BstV1I	GCAGC	7 cut(s)	289, 292, 295, 470, 538, 730, 851
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BsuRI	GGCC	4 cut(s)	474, 515, 802, 901
BtgZI	GCGATG	1 cut(s)	355
BtsCI	GGATG	5 cut(s)	201, 267, 429, 438, 697
BtsI	GCAGTG	1 cut(s)	601
BtsIMutI	CAGTG	3 cut(s)	451, 601, 639
Cac8I	GCNNGC	4 cut(s)	81, 231, 281, 426
Cfr13I	GGNCC	1 cut(s)	322
CseI	GACGC	3 cut(s)	557, 728, 740
Csp6I	GTAC	6 cut(s)	172, 335, 622, 739, 879, 1012
CspCI	CAANNNNNGTGG	2 cut(s)	492, 527
CviAII	CATG	2 cut(s)	40, 869
CviQI	GTAC	6 cut(s)	172, 335, 622, 739, 879, 1012
DdeI	CTNAG	3 cut(s)	236, 735, 831
DpnI	GATC	3 cut(s)	203, 819, 863
DpnII	GATC	3 cut(s)	201, 817, 861
DrdI	GACNNNNNNGTC	1 cut(s)	587
DseDI	GACNNNNNNGTC	1 cut(s)	587
EaeI	YGGCCR	1 cut(s)	513
Eam1104I	CTCTTC	1 cut(s)	729
EarI	CTCTTC	1 cut(s)	729
Eco147I	AGGCCT	1 cut(s)	901
Eco24I	GRGCYC	1 cut(s)	604
Eco31I	GGTCTC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	322
Eco57I	CTGAAG	3 cut(s)	171, 616, 828
EcoNI	CCTNNNNNAGG	1 cut(s)	807
EcoRII	CCWGG	2 cut(s)	317, 901
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	604
FaeI	CATG	2 cut(s)	43, 872
FaqI	GGGAC	2 cut(s)	709, 901
FatI	CATG	2 cut(s)	39, 868
FbaI	TGATCA	2 cut(s)	817, 861
Fnu4HI	GCNGC	7 cut(s)	303, 306, 309, 459, 552, 744, 840
FokI	GGATG	5 cut(s)	208, 254, 416, 425, 704
FriOI	GRGCYC	1 cut(s)	604
Fsp4HI	GCNGC	7 cut(s)	303, 306, 309, 459, 552, 744, 840
FspBI	CTAG	1 cut(s)	708
GluI	GCNGC	7 cut(s)	303, 306, 309, 459, 552, 744, 840
HaeIII	GGCC	4 cut(s)	474, 515, 802, 901
HapII	CCGG	1 cut(s)	689
HgaI	GACGC	3 cut(s)	557, 728, 740
Hin1II	CATG	2 cut(s)	43, 872
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	4 cut(s)	360, 398, 697, 889
HpaII	CCGG	1 cut(s)	689
HphI	GGTGA	2 cut(s)	256, 827
Hpy166II	GTNNAC	6 cut(s)	101, 166, 622, 666, 764, 962
Hpy188I	TCNGA	5 cut(s)	191, 535, 790, 808, 834
Hpy188III	TCNNGA	4 cut(s)	73, 325, 728, 749
Hpy8I	GTNNAC	6 cut(s)	101, 166, 622, 666, 764, 962
HpyAV	CCTTC	4 cut(s)	146, 532, 803, 813
HpyCH4III	ACNGT	3 cut(s)	262, 446, 959
HpyCH4IV	ACGT	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 85, 308, 314, 455, 740
HpyF3I	CTNAG	3 cut(s)	236, 735, 831
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	2 cut(s)	43, 872
Ksp22I	TGATCA	2 cut(s)	817, 861
Kzo9I	GATC	3 cut(s)	201, 817, 861
LguI	GCTCTTC	1 cut(s)	729
LmnI	GCTCC	1 cut(s)	599
Lsp1109I	GCAGC	7 cut(s)	289, 292, 295, 470, 538, 730, 851
LweI	GCATC	3 cut(s)	66, 195, 289
MaeI	CTAG	1 cut(s)	708
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	2 cut(s)	262, 871
MalI	GATC	3 cut(s)	203, 819, 863
MbiI	CCGCTC	1 cut(s)	795
MboI	GATC	3 cut(s)	201, 817, 861
MboII	GAAGA	2 cut(s)	340, 716
MfeI	CAATTG	2 cut(s)	450, 495
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	3 cut(s)	103, 604, 766
MlsI	TGGCCA	1 cut(s)	515
MluCI	AATT	5 cut(s)	139, 450, 495, 560, 856
MluNI	TGGCCA	1 cut(s)	515
MlyI	GAGTC	2 cut(s)	691, 883
MmeI	TCCRAC	3 cut(s)	36, 270, 358
Mox20I	TGGCCA	1 cut(s)	515
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	515
MslI	CAYNNNNRTG	1 cut(s)	981
Msp20I	TGGCCA	1 cut(s)	515
MspA1I	CMGCKG	2 cut(s)	149, 350
MspI	CCGG	1 cut(s)	689
MspR9I	CCNGG	2 cut(s)	319, 903
MunI	CAATTG	2 cut(s)	450, 495
MvaI	CCWGG	2 cut(s)	319, 903
MwoI	GCNNNNNNNGC	6 cut(s)	41, 85, 308, 314, 455, 740
NdeII	GATC	3 cut(s)	201, 817, 861
NlaIII	CATG	2 cut(s)	43, 872
NlaIV	GGNNCC	3 cut(s)	244, 323, 601
NmuCI	GTSAC	2 cut(s)	262, 871
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	981
PceI	AGGCCT	1 cut(s)	901
PciSI	GCTCTTC	1 cut(s)	729
PcsI	WCGNNNNNNNCGW	1 cut(s)	585
PfeI	GAWTC	2 cut(s)	360, 398
PkrI	GCNGC	7 cut(s)	304, 307, 310, 460, 553, 745, 841
PleI	GAGTC	2 cut(s)	691, 883
PpsI	GAGTC	2 cut(s)	691, 883
Psp6I	CCWGG	2 cut(s)	317, 901
PspGI	CCWGG	2 cut(s)	317, 901
PspN4I	GGNNCC	3 cut(s)	244, 323, 601
PspPI	GGNCC	1 cut(s)	322
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	201
PvuII	CAGCTG	2 cut(s)	149, 350
RsaI	GTAC	6 cut(s)	173, 336, 623, 740, 880, 1013
RsaNI	GTAC	6 cut(s)	172, 335, 622, 739, 879, 1012
RseI	CAYNNNNRTG	1 cut(s)	981
SapI	GCTCTTC	1 cut(s)	729
SatI	GCNGC	7 cut(s)	303, 306, 309, 459, 552, 744, 840
Sau3AI	GATC	3 cut(s)	201, 817, 861
Sau96I	GGNCC	1 cut(s)	322
ScaI	AGTACT	1 cut(s)	880
SchI	GAGTC	2 cut(s)	691, 883
ScrFI	CCNGG	2 cut(s)	319, 903
SduI	GDGCHC	3 cut(s)	103, 604, 766
SfaNI	GCATC	3 cut(s)	66, 195, 289
SfcI	CTRYAG	3 cut(s)	402, 489, 912
SinI	GGWCC	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	981
SmlI	CTYRAG	1 cut(s)	950
SmoI	CTYRAG	1 cut(s)	950
Sse9I	AATT	5 cut(s)	139, 450, 495, 560, 856
SseBI	AGGCCT	1 cut(s)	901
SsiI	CCGC	1 cut(s)	795
SspMI	CTAG	1 cut(s)	708
StuI	AGGCCT	1 cut(s)	901
StyD4I	CCNGG	2 cut(s)	317, 901
TaaI	ACNGT	3 cut(s)	262, 446, 959
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	3 cut(s)	358, 579, 700
TasI	AATT	5 cut(s)	139, 450, 495, 560, 856
TatI	WGTACW	2 cut(s)	171, 878
TfiI	GAWTC	2 cut(s)	360, 398
TscAI	CASTG	3 cut(s)	451, 601, 646
TseFI	GTSAC	2 cut(s)	262, 871
TseI	GCWGC	7 cut(s)	302, 305, 308, 458, 551, 743, 839
Tsp45I	GTSAC	2 cut(s)	262, 871
TspDTI	ATGAA	4 cut(s)	222, 231, 553, 957
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	3 cut(s)	451, 601, 646
VneI	GTGCAC	2 cut(s)	99, 762
VpaK11BI	GGWCC	1 cut(s)	322
XagI	CCTNNNNNAGG	1 cut(s)	807
XapI	RAATTY	1 cut(s)	856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1022
XspI	CTAG	1 cut(s)	708
ZrmI	AGTACT	1 cut(s)	880
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.