Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008128

Physical Location & Seq

Genomic Coordinates Forward (+)

21335104 .. 21337223

Gene Structure 2120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGATTTTTCCTACACAACACTTCAAAATACCTTCATGGCTCCCATATTGCTGCTCCTTGTTCTGTTTATGCCGGCTCTACAGATAACAGGTGGACAATCTGCGGGTGTCTGCTATGGACGGAACGGCGACAATTTACCTTCTGATACAGAGGTTATTGATTTGTACAAAAGCAATGGAATTGGAAGGATGAGGATTTATGAGCCAAACCAAGCAACCTTGGAAGCCCTTAGAGGTTCCAACATAGAACTCATGGTCACCATCCTCAACAACAACCTGCAAGCGCTTACTGATGCTGCAGCAGCTACAGATTGGGTCCAGAAAAATGTGCAACCCTACTCGGCTGACGTCAAGTTCAAGTACATTGCCGTTGGAAATGAAGTACACCCTGATGCTGCAGAAGCTCAATATCTTCTGCCTGCCATACAAAATATTCAGAATGCAGTAACAGCCGCTAATCTACAAGGCCAAATCAAAGTGTCAACAGCAATAGATACAACCCTTTTGGACCCTAGCTTCCCTCCTTCAGACGGGGCATTCAGCAGTGCTGCGAATTCATTCATTACCCCAATAATCACCTTTTTGGGCAACAATGGAGCACCACTTCTTGTCAATATATACCCCTACTTCGCCTATATTGGTGACCCTGCTAACATAAAACTAGAATATGCCTTGTTCACTTCACCAGGGGTAGTAGTACAGGATGGTAGTAATGGGTACCAGAACATCTTTGATGCTATCTTGGACACTCATTACTCTGCTCTTGAAAAAGCAGGGGCTCCCAATATGGTGATAGTTGTATCCGAGAGCGGTTGGCCATCTGAAGGTAGTGATGCTGCAACTAATGGTAATGCAGGAACTTACTACAGCAATTTGATCAATCATGTGAAGACCGGGACTCCGAAGAGACCAAATGGAGCTATCGAAACTTACCTGTTTGCCATGTTTGATGAAAACTTGAAGGATGGTGCAGAAGTTGAGAAACATTTTGGTATCTTCTCCCCTAACAAACAGCCCAAGTACCAACTCACCTTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

347

Amino Acids

37.34

Weight (kDa)

4.58

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	36 - 345	6.1e-110	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008128)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11270 FvH4_3g28370 FvH4_3g28390 FvH4_4g30150
malus_domestica	MD03G1171500.v1.1 MD11G1189000.v1.1 MD12G1089500.v1.1
prunus_persica	Prupe.2G263400_v2.0.a1 Prupe.2G270100_v2.0.a1 Prupe.4G255600_v2.0.a1
pyrus_communis	pycom01g17970 pycom03g12870 pycom11g16540 pycom12g07370
rosa_chinensis	RchiOBHm_Chr5g0053361
rosa_laevigata	RLG00000034767
rosa_multiflora	Rmu_sc0001966.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029090
rosa_rugosa	Rorug05G0267400
rosa_samantha	Rh5AG340000 Rh5BG350400 Rh5CG376700 Rh5DG364300
rosa_wichuraiana	Rw5G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	351
Acc36I	ACCTGC	1 cut(s)	285
Acc65I	GGTACC	1 cut(s)	717
AccB1I	GGYRCC	1 cut(s)	717
AccBSI	CCGCTC	1 cut(s)	810
AciI	CCGC	3 cut(s)	104, 453, 810
AcoI	YGGCCR	1 cut(s)	815
AcsI	RAATTY	1 cut(s)	553
AcuI	CTGAAG	2 cut(s)	510, 843
AcyI	GRCGYC	1 cut(s)	348
AfaI	GTAC	6 cut(s)	167, 362, 384, 699, 719, 1022
AfeI	AGCGCT	1 cut(s)	285
AfiI	CCNNNNNNNGG	2 cut(s)	530, 824
AgsI	TTSAA	4 cut(s)	26, 358, 767, 961
AjnI	CCWGG	1 cut(s)	685
AluBI	AGCT	4 cut(s)	305, 404, 516, 920
AluI	AGCT	4 cut(s)	305, 404, 516, 920
Alw21I	GWGCWC	1 cut(s)	601
Alw26I	GTCTC	1 cut(s)	901
Aor51HI	AGCGCT	1 cut(s)	285
AoxI	GGCC	2 cut(s)	466, 815
ApeKI	GCWGC	7 cut(s)	52, 296, 299, 302, 395, 548, 836
ApoI	RAATTY	1 cut(s)	553
Asp700I	GAANNNNTTC	1 cut(s)	557
Asp718I	GGTACC	1 cut(s)	717
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	316, 508
AsuC2I	CCSGG	1 cut(s)	895
AsuHPI	GGTGA	6 cut(s)	250, 568, 653, 675, 802, 1021
AvaII	GGWCC	2 cut(s)	316, 508
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BalI	TGGCCA	1 cut(s)	817
BanI	GGYRCC	1 cut(s)	717
BanII	GRGCYC	1 cut(s)	781
BbsI	GAAGAC	1 cut(s)	896
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	7 cut(s)	39, 283, 311, 314, 382, 535, 823
BccI	CCATC	4 cut(s)	269, 698, 826, 959
BceAI	ACGGC	2 cut(s)	142, 353
BciT130I	CCWGG	1 cut(s)	687
BciVI	GTATCC	1 cut(s)	811
BclI	TGATCA	1 cut(s)	876
BcnI	CCSGG	1 cut(s)	895
BcoDI	GTCTC	1 cut(s)	901
BfaI	CTAG	3 cut(s)	513, 662, 1039
BfmI	CTRYAG	5 cut(s)	80, 297, 306, 396, 865
BfoI	RGCGCY	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	285
BfuI	GTATCC	1 cut(s)	811
BisI	GCNGC	8 cut(s)	53, 297, 300, 303, 396, 453, 549, 837
BlsI	GCNGC	8 cut(s)	54, 298, 301, 304, 397, 454, 550, 838
Bme1390I	CCNGG	2 cut(s)	687, 895
Bme18I	GGWCC	2 cut(s)	316, 508
BmgT120I	GGNCC	2 cut(s)	316, 508
BmiI	GGNNCC	6 cut(s)	42, 238, 317, 510, 719, 780
BmrFI	CCNGG	2 cut(s)	687, 895
BmsI	GCATC	4 cut(s)	283, 382, 724, 823
BpiI	GAAGAC	1 cut(s)	896
BpuMI	CCSGG	1 cut(s)	895
BsaHI	GRCGYC	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	901
BsaJI	CCNNGG	2 cut(s)	219, 686
BsaXI	ACNNNNNCTCC	2 cut(s)	883, 913
Bsc4I	CCNNNNNNNGG	2 cut(s)	530, 824
Bse118I	RCCGGY	1 cut(s)	73
Bse3DI	GCAATG	2 cut(s)	181, 363
BseBI	CCWGG	1 cut(s)	687
BseDI	CCNNGG	2 cut(s)	219, 686
BseGI	GGATG	4 cut(s)	195, 261, 709, 970
BseLI	CCNNNNNNNGG	2 cut(s)	530, 824
BseMI	GCAATG	2 cut(s)	181, 363
BseXI	GCAGC	7 cut(s)	39, 283, 311, 314, 382, 535, 823
BsgI	GTGCAG	1 cut(s)	990
BshFI	GGCC	2 cut(s)	468, 817
BshNI	GGYRCC	1 cut(s)	717
BsiHKAI	GWGCWC	1 cut(s)	601
BsiSI	CCGG	2 cut(s)	74, 894
BslFI	GGGAC	1 cut(s)	910
BslI	CCNNNNNNNGG	2 cut(s)	530, 824
BsmAI	GTCTC	1 cut(s)	901
BsmFI	GGGAC	1 cut(s)	910
BsmI	GAATGC	2 cut(s)	445, 536
BsnI	GGCC	2 cut(s)	468, 817
Bso31I	GGTCTC	1 cut(s)	901
Bsp1286I	GDGCHC	2 cut(s)	601, 781
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	876
BspACI	CCGC	3 cut(s)	104, 453, 810
BspANI	GGCC	2 cut(s)	468, 817
BspLI	GGNNCC	6 cut(s)	42, 238, 317, 510, 719, 780
BspMAI	CTGCAG	2 cut(s)	301, 400
BspMI	ACCTGC	1 cut(s)	285
BspT107I	GGYRCC	1 cut(s)	717
BspTNI	GGTCTC	1 cut(s)	901
BsrBI	CCGCTC	1 cut(s)	810
BsrDI	GCAATG	2 cut(s)	181, 363
BsrFI	RCCGGY	1 cut(s)	73
BsrGI	TGTACA	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	219, 686
BssMI	GATC	1 cut(s)	876
BssNI	GRCGYC	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	687
Bst6I	CTCTTC	1 cut(s)	899
BstACI	GRCGYC	1 cut(s)	348
BstAUI	TGTACA	1 cut(s)	165
BstC8I	GCNNGC	3 cut(s)	75, 282, 420
BstDEI	CTNAG	1 cut(s)	230
BstEII	GGTNACC	2 cut(s)	256, 641
BstF5I	GGATG	4 cut(s)	195, 261, 709, 970
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	1 cut(s)	879
BstMAI	GTCTC	1 cut(s)	901
BstMBI	GATC	1 cut(s)	876
BstMWI	GCNNNNNNNGC	3 cut(s)	302, 401, 449
BstNI	CCWGG	1 cut(s)	687
BstPI	GGTNACC	2 cut(s)	256, 641
BstSCI	CCNGG	2 cut(s)	685, 893
BstSFI	CTRYAG	5 cut(s)	80, 297, 306, 396, 865
BstV1I	GCAGC	7 cut(s)	39, 283, 311, 314, 382, 535, 823
BstV2I	GAAGAC	1 cut(s)	896
BsuI	GTATCC	1 cut(s)	811
BsuRI	GGCC	2 cut(s)	468, 817
BtsCI	GGATG	4 cut(s)	195, 261, 709, 970
BtsI	GCAGTG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	550
BveI	ACCTGC	1 cut(s)	285
Cac8I	GCNNGC	3 cut(s)	75, 282, 420
CfoI	GCGC	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	316, 508
Csp6I	GTAC	6 cut(s)	166, 361, 383, 698, 718, 1021
CviAII	CATG	4 cut(s)	37, 253, 884, 943
CviQI	GTAC	6 cut(s)	166, 361, 383, 698, 718, 1021
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	1 cut(s)	878
DpnII	GATC	1 cut(s)	876
EaeI	YGGCCR	1 cut(s)	815
Eam1104I	CTCTTC	1 cut(s)	899
EarI	CTCTTC	1 cut(s)	899
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	781
Eco31I	GGTCTC	1 cut(s)	901
Eco47I	GGWCC	2 cut(s)	316, 508
Eco47III	AGCGCT	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	510, 843
Eco91I	GGTNACC	2 cut(s)	256, 641
EcoO65I	GGTNACC	2 cut(s)	256, 641
EcoRI	GAATTC	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	685
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	781
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	4 cut(s)	40, 256, 887, 946
FaqI	GGGAC	1 cut(s)	910
FatI	CATG	4 cut(s)	36, 252, 883, 942
FauI	CCCGC	1 cut(s)	97
FbaI	TGATCA	1 cut(s)	876
Fnu4HI	GCNGC	8 cut(s)	53, 297, 300, 303, 396, 453, 549, 837
FokI	GGATG	4 cut(s)	202, 248, 716, 977
FriOI	GRGCYC	1 cut(s)	781
Fsp4HI	GCNGC	8 cut(s)	53, 297, 300, 303, 396, 453, 549, 837
FspBI	CTAG	3 cut(s)	513, 662, 1039
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	8 cut(s)	53, 297, 300, 303, 396, 453, 549, 837
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	2 cut(s)	468, 817
HapII	CCGG	2 cut(s)	74, 894
HhaI	GCGC	1 cut(s)	286
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	4 cut(s)	40, 256, 887, 946
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	483
HindII	GTYRAC	1 cut(s)	483
HinfI	GANTC	1 cut(s)	898
HpaII	CCGG	2 cut(s)	74, 894
HphI	GGTGA	6 cut(s)	250, 568, 653, 675, 802, 1021
Hpy166II	GTNNAC	4 cut(s)	95, 385, 483, 678
Hpy188I	TCNGA	6 cut(s)	145, 438, 529, 805, 823, 903
Hpy188III	TCNNGA	2 cut(s)	319, 764
Hpy8I	GTNNAC	4 cut(s)	95, 385, 483, 678
HpyAV	CCTTC	6 cut(s)	43, 150, 180, 534, 818, 955
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	8 cut(s)	280, 299, 331, 398, 443, 839, 854, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	302, 401, 449
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	348
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	4 cut(s)	40, 256, 887, 946
HspAI	GCGC	1 cut(s)	284
KpnI	GGTACC	1 cut(s)	721
KroI	GCCGGC	1 cut(s)	73
KroNI	GCCGGC	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	876
Kzo9I	GATC	1 cut(s)	876
LmnI	GCTCC	5 cut(s)	46, 60, 596, 784, 917
Lsp1109I	GCAGC	7 cut(s)	39, 283, 311, 314, 382, 535, 823
LweI	GCATC	4 cut(s)	283, 382, 724, 823
MaeI	CTAG	3 cut(s)	513, 662, 1039
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	3 cut(s)	256, 445, 641
MalI	GATC	1 cut(s)	878
MbiI	CCGCTC	1 cut(s)	810
MboI	GATC	1 cut(s)	876
MboII	GAAGA	4 cut(s)	404, 901, 916, 988
MhlI	GDGCHC	2 cut(s)	601, 781
MlsI	TGGCCA	1 cut(s)	817
MluCI	AATT	4 cut(s)	133, 180, 553, 871
MluNI	TGGCCA	1 cut(s)	817
MlyI	GAGTC	1 cut(s)	892
MmeI	TCCRAC	2 cut(s)	264, 352
MnlI	CCTC	5 cut(s)	145, 186, 227, 275, 531
Mox20I	TGGCCA	1 cut(s)	817
MroNI	GCCGGC	1 cut(s)	73
MroXI	GAANNNNTTC	1 cut(s)	557
MscI	TGGCCA	1 cut(s)	817
MslI	CAYNNNNRTG	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	817
MspI	CCGG	2 cut(s)	74, 894
MspR9I	CCNGG	2 cut(s)	687, 895
Mva1269I	GAATGC	2 cut(s)	445, 536
MvaI	CCWGG	1 cut(s)	687
MwoI	GCNNNNNNNGC	3 cut(s)	302, 401, 449
NaeI	GCCGGC	1 cut(s)	75
NciI	CCSGG	1 cut(s)	895
NdeII	GATC	1 cut(s)	876
NgoMIV	GCCGGC	1 cut(s)	73
NlaIII	CATG	4 cut(s)	40, 256, 887, 946
NlaIV	GGNNCC	6 cut(s)	42, 238, 317, 510, 719, 780
NmeAIII	GCCGAG	1 cut(s)	320
NmuCI	GTSAC	2 cut(s)	256, 641
PctI	GAATGC	2 cut(s)	445, 536
PdiI	GCCGGC	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	557
PkrI	GCNGC	8 cut(s)	54, 298, 301, 304, 397, 454, 550, 838
PleI	GAGTC	1 cut(s)	892
PpsI	GAGTC	1 cut(s)	892
Psp6I	CCWGG	1 cut(s)	685
PspEI	GGTNACC	2 cut(s)	256, 641
PspGI	CCWGG	1 cut(s)	685
PspN4I	GGNNCC	6 cut(s)	42, 238, 317, 510, 719, 780
PspPI	GGNCC	2 cut(s)	316, 508
PstI	CTGCAG	2 cut(s)	301, 400
RsaI	GTAC	6 cut(s)	167, 362, 384, 699, 719, 1022
RsaNI	GTAC	6 cut(s)	166, 361, 383, 698, 718, 1021
RseI	CAYNNNNRTG	1 cut(s)	390
SatI	GCNGC	8 cut(s)	53, 297, 300, 303, 396, 453, 549, 837
Sau3AI	GATC	1 cut(s)	876
Sau96I	GGNCC	2 cut(s)	316, 508
SchI	GAGTC	1 cut(s)	892
ScrFI	CCNGG	2 cut(s)	687, 895
SduI	GDGCHC	2 cut(s)	601, 781
SfaNI	GCATC	4 cut(s)	283, 382, 724, 823
SfcI	CTRYAG	5 cut(s)	80, 297, 306, 396, 865
SinI	GGWCC	2 cut(s)	316, 508
SmiMI	CAYNNNNRTG	1 cut(s)	390
Sse9I	AATT	4 cut(s)	133, 180, 553, 871
SsiI	CCGC	3 cut(s)	104, 453, 810
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	3 cut(s)	513, 662, 1039
StyD4I	CCNGG	2 cut(s)	685, 893
StyI	CCWWGG	1 cut(s)	219
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	924
TasI	AATT	4 cut(s)	133, 180, 553, 871
TatI	WGTACW	4 cut(s)	165, 360, 382, 697
TauI	GCSGC	1 cut(s)	455
TscAI	CASTG	1 cut(s)	550
TseFI	GTSAC	2 cut(s)	256, 641
TseI	GCWGC	7 cut(s)	52, 296, 299, 302, 395, 548, 836
Tsp45I	GTSAC	2 cut(s)	256, 641
TspDTI	ATGAA	5 cut(s)	25, 393, 546, 550, 966
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	550
VpaK11BI	GGWCC	2 cut(s)	316, 508
XapI	RAATTY	1 cut(s)	553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1031
XmnI	GAANNNNTTC	1 cut(s)	557
XspI	CTAG	3 cut(s)	513, 662, 1039
ZraI	GACGTC	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.