RLG00000034767

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008128
Physical Location & Seq
Forward (+)
54145996 .. 54147737
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034767

Sequence Viewer

Length: 957 bp
ATGCTTATTTCAGGTGCACAATCTGTGGGTGTCTGCTATGGACGAAATGGCGACAATTTACCTACTGATACAGAAGTTGTTGATCTGTACAAAAGCAATGGAATTGGAAGGATGAGAATATACGAGCCAAACCAAGCAACCTTGGAGGCCCTTAAGGGTTCTAACATAGAACTCATAGTCACCATCCTCAACAACCACCTTCAAGAGCTCACTGATGCTGCAGCAGCTACAAATTGGATCCAGCAAAATGTGCAACCTTACTCGGCTGATGTCAAATTCAAGTACATTGCTGTTGGCAATGAAGTACACCCTGATGCTGCAGAGGCCCAATATCTTCTTCCTGCCATAAAGAACATTCAGAACGCGGTTACAGCCGCCAATCTACAAGTCAAAGTGTCAACAGCAATAGATACAACTCTTTTGGGTGCTAACTTCCCTCCTTCAAATGGGGCATTCAGCGATGCTGCAAATTCATTCATTACCCCAATTATCACCTTCTTAGGCAGCAATGGATCACCTCTTCTTGCCAATGTATACCCCTACTTCGCCTATGTCGGTAACCCTGCTGACATAAAACTAGAATATGCCTTGTTCACTTCACCAGGGGTGGTGGTACAAGATGGTAGTAATGGGTACCAGAACCTCTTTGATGCTTTGTTGGATGCTCTTTACTCTGCTCTTGAAAAAGCAGGGGCACCCAATATGGCGATAGTTGTATCCGAGAGCGGTTGGCCATCTGCAGGTAGTGATGCTGCAACTACTGGTAATGCAGGAACATACTACAGCAATTTGATCAAGCATGTGAAGACCGGGACTCCGAAGAGGCCTAATGGAGGTATCGAAACTTATCTGTTTGCCATGTTTGATGAAAACCAAAAGACTGGTGACGAAGTTGAGAAACATTTTGGTCTCTTCTTACCTAACAAACAGCCCAAGTACCAACTCACCTTTGGCTAG

Protein Analysis

319

Amino Acids

34.07

Weight (kDa)

4.83

Isoelectric Point (pI)

24.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 9 - 317 3.4e-110 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 731
Acc65I GGTACC 1 cut(s) 633
AccB1I GGYRCC 2 cut(s) 633, 694
AccBSI CCGCTC 1 cut(s) 726
AccI GTMKAC 1 cut(s) 534
AccII CGCG 1 cut(s) 365
AciI CCGC 3 cut(s) 365, 375, 726
AclWI GGATC 3 cut(s) 232, 245, 520
AcoI YGGCCR 1 cut(s) 731
AcsI RAATTY 2 cut(s) 275, 469
AfaI GTAC 6 cut(s) 89, 284, 306, 615, 635, 938
AfiI CCNNNNNNNGG 3 cut(s) 446, 740, 833
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 4 cut(s) 203, 280, 444, 683
AjnI CCWGG 1 cut(s) 601
AjuI GAANNNNNNNTTGG 2 cut(s) 321, 353
AluBI AGCT 2 cut(s) 208, 227
AluI AGCT 2 cut(s) 208, 227
Alw21I GWGCWC 2 cut(s) 19, 210
Alw26I GTCTC 1 cut(s) 914
Alw44I GTGCAC 1 cut(s) 15
AlwI GGATC 3 cut(s) 232, 245, 520
AoxI GGCC 4 cut(s) 147, 324, 731, 824
ApaLI GTGCAC 1 cut(s) 15
ApeKI GCWGC 7 cut(s) 218, 221, 224, 317, 464, 504, 752
ApoI RAATTY 2 cut(s) 275, 469
Asp718I GGTACC 1 cut(s) 633
AspS9I GGNCC 2 cut(s) 148, 325
AsuC2I CCSGG 1 cut(s) 811
AsuHPI GGTGA 6 cut(s) 172, 484, 507, 591, 896, 937
BaeGI GKGCMC 2 cut(s) 19, 697
BaeI ACNNNNGTAYC 2 cut(s) 60, 93
BalI TGGCCA 1 cut(s) 733
BamHI GGATCC 1 cut(s) 237
BanI GGYRCC 2 cut(s) 633, 694
BanII GRGCYC 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 812
Bbv12I GWGCWC 2 cut(s) 19, 210
BbvI GCAGC 7 cut(s) 205, 233, 236, 304, 451, 516, 739
BccI CCATC 3 cut(s) 191, 614, 742
BciT130I CCWGG 1 cut(s) 603
BciVI GTATCC 1 cut(s) 727
BclI TGATCA 1 cut(s) 792
BcnI CCSGG 1 cut(s) 811
BcoDI GTCTC 1 cut(s) 914
BfaI CTAG 2 cut(s) 578, 955
BfmI CTRYAG 4 cut(s) 219, 318, 738, 781
BfrI CTTAAG 1 cut(s) 152
BfuAI ACCTGC 1 cut(s) 731
BfuI GTATCC 1 cut(s) 727
BisI GCNGC 8 cut(s) 219, 222, 225, 318, 375, 465, 505, 753
BlsI GCNGC 8 cut(s) 220, 223, 226, 319, 376, 466, 506, 754
Bme1390I CCNGG 2 cut(s) 603, 811
BmgT120I GGNCC 2 cut(s) 148, 325
BmiI GGNNCC 3 cut(s) 239, 635, 696
BmrFI CCNGG 2 cut(s) 603, 811
BmsI GCATC 6 cut(s) 205, 304, 451, 640, 652, 739
BpiI GAAGAC 1 cut(s) 812
BpuMI CCSGG 1 cut(s) 811
BsaI GGTCTC 1 cut(s) 914
BsaJI CCNNGG 2 cut(s) 141, 602
BsaXI ACNNNNNCTCC 2 cut(s) 799, 829
Bsc4I CCNNNNNNNGG 3 cut(s) 446, 740, 833
Bse1I ACTGG 2 cut(s) 766, 886
Bse3DI GCAATG 4 cut(s) 103, 285, 304, 514
BseBI CCWGG 1 cut(s) 603
BseDI CCNNGG 2 cut(s) 141, 602
BseGI GGATG 3 cut(s) 117, 183, 667
BseLI CCNNNNNNNGG 3 cut(s) 446, 740, 833
BseMI GCAATG 4 cut(s) 103, 285, 304, 514
BseNI ACTGG 2 cut(s) 766, 886
BseSI GKGCMC 2 cut(s) 19, 697
BseXI GCAGC 7 cut(s) 205, 233, 236, 304, 451, 516, 739
Bsh1236I CGCG 1 cut(s) 365
BshFI GGCC 4 cut(s) 149, 326, 733, 826
BshNI GGYRCC 2 cut(s) 633, 694
BsiHKAI GWGCWC 2 cut(s) 19, 210
BsiSI CCGG 1 cut(s) 810
BslFI GGGAC 1 cut(s) 826
BslI CCNNNNNNNGG 3 cut(s) 446, 740, 833
BsmAI GTCTC 1 cut(s) 914
BsmFI GGGAC 1 cut(s) 826
BsmI GAATGC 1 cut(s) 452
BsnI GGCC 4 cut(s) 149, 326, 733, 826
Bso31I GGTCTC 1 cut(s) 914
Bsp1286I GDGCHC 3 cut(s) 19, 210, 697
Bsp1407I TGTACA 1 cut(s) 87
Bsp143I GATC 4 cut(s) 82, 237, 512, 792
BspACI CCGC 3 cut(s) 365, 375, 726
BspANI GGCC 4 cut(s) 149, 326, 733, 826
BspFNI CGCG 1 cut(s) 365
BspLI GGNNCC 3 cut(s) 239, 635, 696
BspMAI CTGCAG 3 cut(s) 223, 322, 742
BspMI ACCTGC 1 cut(s) 731
BspPI GGATC 3 cut(s) 232, 245, 520
BspT107I GGYRCC 2 cut(s) 633, 694
BspTI CTTAAG 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 914
BsrBI CCGCTC 1 cut(s) 726
BsrDI GCAATG 4 cut(s) 103, 285, 304, 514
BsrGI TGTACA 1 cut(s) 87
BsrI ACTGG 2 cut(s) 766, 886
BssECI CCNNGG 2 cut(s) 141, 602
BssMI GATC 4 cut(s) 82, 237, 512, 792
BssNAI GTATAC 1 cut(s) 535
BssT1I CCWWGG 1 cut(s) 141
Bst1107I GTATAC 1 cut(s) 535
Bst2UI CCWGG 1 cut(s) 603
Bst6I CTCTTC 3 cut(s) 525, 815, 917
BstAFI CTTAAG 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 250
BstAUI TGTACA 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 499
BstEII GGTNACC 1 cut(s) 557
BstENI CCTNNNNNAGG 1 cut(s) 831
BstF5I GGATG 3 cut(s) 117, 183, 667
BstFNI CGCG 1 cut(s) 365
BstKTI GATC 4 cut(s) 85, 240, 515, 795
BstMAI GTCTC 1 cut(s) 914
BstMBI GATC 4 cut(s) 82, 237, 512, 792
BstMWI GCNNNNNNNGC 4 cut(s) 224, 250, 323, 371
BstNI CCWGG 1 cut(s) 603
BstNSI RCATGY 1 cut(s) 803
BstPI GGTNACC 1 cut(s) 557
BstSCI CCNGG 2 cut(s) 601, 809
BstSFI CTRYAG 4 cut(s) 219, 318, 738, 781
BstSLI GKGCMC 2 cut(s) 19, 697
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 7 cut(s) 205, 233, 236, 304, 451, 516, 739
BstV2I GAAGAC 1 cut(s) 812
BstX2I RGATCY 1 cut(s) 237
BstXI CCANNNNNNTGG 1 cut(s) 881
BstYI RGATCY 1 cut(s) 237
BstZ17I GTATAC 1 cut(s) 535
BsuI GTATCC 1 cut(s) 727
BsuRI GGCC 4 cut(s) 149, 326, 733, 826
BtgZI GCGATG 1 cut(s) 474
BtsCI GGATG 3 cut(s) 117, 183, 667
BtsIMutI CAGTG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 731
Cfr13I GGNCC 2 cut(s) 148, 325
Csp6I GTAC 6 cut(s) 88, 283, 305, 614, 634, 937
CviAII CATG 2 cut(s) 800, 859
CviQI GTAC 6 cut(s) 88, 283, 305, 614, 634, 937
DdeI CTNAG 1 cut(s) 499
DpnI GATC 4 cut(s) 84, 239, 514, 794
DpnII GATC 4 cut(s) 82, 237, 512, 792
EaeI YGGCCR 1 cut(s) 731
Eam1104I CTCTTC 3 cut(s) 525, 815, 917
EarI CTCTTC 3 cut(s) 525, 815, 917
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 141
Eco147I AGGCCT 1 cut(s) 826
Eco24I GRGCYC 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 914
Eco53kI GAGCTC 1 cut(s) 208
Eco91I GGTNACC 1 cut(s) 557
EcoICRI GAGCTC 1 cut(s) 208
EcoNI CCTNNNNNAGG 1 cut(s) 831
EcoO109I RGGNCCY 1 cut(s) 148
EcoO65I GGTNACC 1 cut(s) 557
EcoRII CCWGG 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 803, 862
FaqI GGGAC 1 cut(s) 826
FatI CATG 2 cut(s) 799, 858
FbaI TGATCA 1 cut(s) 792
FblI GTMKAC 1 cut(s) 534
Fnu4HI GCNGC 8 cut(s) 219, 222, 225, 318, 375, 465, 505, 753
FokI GGATG 3 cut(s) 124, 170, 674
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 8 cut(s) 219, 222, 225, 318, 375, 465, 505, 753
FspBI CTAG 2 cut(s) 578, 955
GluI GCNGC 8 cut(s) 219, 222, 225, 318, 375, 465, 505, 753
HaeIII GGCC 4 cut(s) 149, 326, 733, 826
HapII CCGG 1 cut(s) 810
Hin1II CATG 2 cut(s) 803, 862
HincII GTYRAC 1 cut(s) 399
HindII GTYRAC 1 cut(s) 399
HinfI GANTC 1 cut(s) 814
HpaII CCGG 1 cut(s) 810
HphI GGTGA 6 cut(s) 172, 484, 507, 591, 896, 937
Hpy166II GTNNAC 5 cut(s) 17, 307, 399, 535, 594
Hpy188I TCNGA 3 cut(s) 360, 721, 819
Hpy188III TCNNGA 2 cut(s) 203, 680
Hpy8I GTNNAC 5 cut(s) 17, 307, 399, 535, 594
HpyAV CCTTC 4 cut(s) 102, 209, 450, 505
HpyCH4V TGCA 8 cut(s) 17, 221, 253, 320, 467, 740, 755, 770
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 250, 323, 371
HpyF3I CTNAG 1 cut(s) 499
Hsp92II CATG 2 cut(s) 803, 862
KpnI GGTACC 1 cut(s) 637
Ksp22I TGATCA 1 cut(s) 792
Kzo9I GATC 4 cut(s) 82, 237, 512, 792
Lsp1109I GCAGC 7 cut(s) 205, 233, 236, 304, 451, 516, 739
LweI GCATC 6 cut(s) 205, 304, 451, 640, 652, 739
MaeI CTAG 2 cut(s) 578, 955
MaeIII GTNAC 4 cut(s) 178, 367, 557, 884
MalI GATC 4 cut(s) 84, 239, 514, 794
MbiI CCGCTC 1 cut(s) 726
MboI GATC 4 cut(s) 82, 237, 512, 792
MboII GAAGA 6 cut(s) 326, 329, 512, 817, 832, 904
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 3 cut(s) 19, 210, 697
MlsI TGGCCA 1 cut(s) 733
MluCI AATT 7 cut(s) 55, 102, 232, 275, 469, 486, 787
MluNI TGGCCA 1 cut(s) 733
MlyI GAGTC 1 cut(s) 808
MmeI TCCRAC 1 cut(s) 639
MnlI CCTC 8 cut(s) 139, 197, 316, 447, 528, 653, 816, 827
Mox20I TGGCCA 1 cut(s) 733
MscI TGGCCA 1 cut(s) 733
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 733
MspCI CTTAAG 1 cut(s) 152
MspI CCGG 1 cut(s) 810
MspR9I CCNGG 2 cut(s) 603, 811
Mva1269I GAATGC 1 cut(s) 452
MvaI CCWGG 1 cut(s) 603
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 4 cut(s) 224, 250, 323, 371
NciI CCSGG 1 cut(s) 811
NdeII GATC 4 cut(s) 82, 237, 512, 792
NlaIII CATG 2 cut(s) 803, 862
NlaIV GGNNCC 3 cut(s) 239, 635, 696
NmeAIII GCCGAG 1 cut(s) 242
NmuCI GTSAC 2 cut(s) 178, 884
NspI RCATGY 1 cut(s) 803
PceI AGGCCT 1 cut(s) 826
PctI GAATGC 1 cut(s) 452
PkrI GCNGC 8 cut(s) 220, 223, 226, 319, 376, 466, 506, 754
PleI GAGTC 1 cut(s) 808
PpsI GAGTC 1 cut(s) 808
Psp124BI GAGCTC 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 601
PspEI GGTNACC 1 cut(s) 557
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 3 cut(s) 239, 635, 696
PspPI GGNCC 2 cut(s) 148, 325
PstI CTGCAG 3 cut(s) 223, 322, 742
PsuI RGATCY 1 cut(s) 237
RsaI GTAC 6 cut(s) 89, 284, 306, 615, 635, 938
RsaNI GTAC 6 cut(s) 88, 283, 305, 614, 634, 937
RseI CAYNNNNRTG 1 cut(s) 312
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 8 cut(s) 219, 222, 225, 318, 375, 465, 505, 753
Sau3AI GATC 4 cut(s) 82, 237, 512, 792
Sau96I GGNCC 2 cut(s) 148, 325
SchI GAGTC 1 cut(s) 808
ScrFI CCNGG 2 cut(s) 603, 811
SduI GDGCHC 3 cut(s) 19, 210, 697
SfaNI GCATC 6 cut(s) 205, 304, 451, 640, 652, 739
SfcI CTRYAG 4 cut(s) 219, 318, 738, 781
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 7 cut(s) 55, 102, 232, 275, 469, 486, 787
SseBI AGGCCT 1 cut(s) 826
SsiI CCGC 3 cut(s) 365, 375, 726
SspMI CTAG 2 cut(s) 578, 955
SstI GAGCTC 1 cut(s) 210
StuI AGGCCT 1 cut(s) 826
StyD4I CCNGG 2 cut(s) 601, 809
StyI CCWWGG 1 cut(s) 141
TaqI TCGA 1 cut(s) 840
TasI AATT 7 cut(s) 55, 102, 232, 275, 469, 486, 787
TatI WGTACW 3 cut(s) 87, 282, 304
TauI GCSGC 1 cut(s) 377
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 2 cut(s) 178, 884
TseI GCWGC 7 cut(s) 218, 221, 224, 317, 464, 504, 752
Tsp45I GTSAC 2 cut(s) 178, 884
TspDTI ATGAA 4 cut(s) 315, 462, 466, 882
TspRI CASTG 1 cut(s) 217
Vha464I CTTAAG 1 cut(s) 152
VneI GTGCAC 1 cut(s) 15
XagI CCTNNNNNAGG 1 cut(s) 831
XapI RAATTY 2 cut(s) 275, 469
XceI RCATGY 1 cut(s) 803
XcmI CCANNNNNNNNNTGG 1 cut(s) 947
XmiI GTMKAC 1 cut(s) 534
XspI CTAG 2 cut(s) 578, 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.