Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001966.1

Orthogroup ID

OG0008128

Physical Location & Seq

Genomic Coordinates Forward (+)

25593 .. 27204

Gene Structure 1612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001966.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atggctcccatattgctgctccttgtactgttgatgcctgctctacaaatgacaggtgcacaatctgcgggtgtctgctatggacgaaatggcgacaatttacctactgatacagaagttgttgatctgtacaaaagcaatggaattggaaggatgaggatatacgagccaaaccaagcaaccttggaggcccttaaaggttctaacatagaactcatagtcaccatcctcaacaaccaccttcaagagctcactgatgctgcagcagctacaaattgggtccagcaaaatgtgcaaccttacgcggctgatgtcaaattcaagtacattgctgttggcaatgaagtacaccctgatgctgcagaggcaaaatatcttcttcctgccatacagaacattcagaacgcggttacagccgccaatctacaagtcaaagtgtcaacagcaatagatacaactcttacccaaaacttccctccttcaaatggggcattcagcgatgctgcgaattcatttattaccccaattatcaccttcttaggcaacaatggatcaccacttcttgccaatatatacccctacttcgcctatgtcggtaacgctgacataaaactagaatatgccttgttcacttcaccaggggtagtggtacaagatggtagtaatgggtaccagaacctctttgatgctttgttggatactctttactctgctcttgaaaaagcaggggcacccaatatggcaatagttgtatccgagagcggttggccatctgcaggtagtgatgctgcaactactggtaatgcaggaacatactacagcaatttgatcaagcatgtgaagaccgggactccgaagaggcctaatggaggtatcgaaacttatctgtttgccatgtttgatgaaaacctcaagactggtgacgaagttgagaaacattttggtctcttcttccctaacaaacagcccaagtaccaactcacctttggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

330

Amino Acids

35.51

Weight (kDa)

4.83

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008128)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11270 FvH4_3g28370 FvH4_3g28390 FvH4_4g30150
malus_domestica	MD03G1171500.v1.1 MD11G1189000.v1.1 MD12G1089500.v1.1
prunus_persica	Prupe.2G263400_v2.0.a1 Prupe.2G270100_v2.0.a1 Prupe.4G255600_v2.0.a1
pyrus_communis	pycom01g17970 pycom03g12870 pycom11g16540 pycom12g07370
rosa_chinensis	RchiOBHm_Chr5g0053361
rosa_laevigata	RLG00000034767
rosa_multiflora	Rmu_sc0001966.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029090
rosa_rugosa	Rorug05G0267400
rosa_samantha	Rh5AG340000 Rh5BG350400 Rh5CG376700 Rh5DG364300
rosa_wichuraiana	Rw5G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	767
Acc65I	GGTACC	1 cut(s)	669
AccB1I	GGYRCC	2 cut(s)	669, 730
AccBSI	CCGCTC	1 cut(s)	762
AccII	CGCG	2 cut(s)	305, 407
AciI	CCGC	5 cut(s)	68, 305, 407, 417, 762
AclWI	GGATC	1 cut(s)	559
AcoI	YGGCCR	1 cut(s)	767
AcsI	RAATTY	2 cut(s)	317, 508
AfaI	GTAC	7 cut(s)	27, 131, 326, 348, 651, 671, 974
AfiI	CCNNNNNNNGG	3 cut(s)	485, 776, 869
AgsI	TTSAA	4 cut(s)	245, 322, 483, 719
AjnI	CCWGG	1 cut(s)	637
AluBI	AGCT	2 cut(s)	250, 269
AluI	AGCT	2 cut(s)	250, 269
Alw21I	GWGCWC	2 cut(s)	61, 252
Alw26I	GTCTC	1 cut(s)	950
Alw44I	GTGCAC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	559
AoxI	GGCC	3 cut(s)	189, 767, 860
ApaLI	GTGCAC	1 cut(s)	57
ApeKI	GCWGC	7 cut(s)	16, 260, 263, 266, 359, 503, 788
ApoI	RAATTY	2 cut(s)	317, 508
Asp718I	GGTACC	1 cut(s)	669
AspS9I	GGNCC	2 cut(s)	190, 280
AsuC2I	CCSGG	1 cut(s)	847
AsuHPI	GGTGA	6 cut(s)	214, 523, 546, 627, 932, 973
AvaII	GGWCC	1 cut(s)	280
BaeGI	GKGCMC	2 cut(s)	61, 733
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BalI	TGGCCA	1 cut(s)	769
BanI	GGYRCC	2 cut(s)	669, 730
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	848
Bbv12I	GWGCWC	2 cut(s)	61, 252
BbvI	GCAGC	7 cut(s)	3, 247, 275, 278, 346, 490, 775
BccI	CCATC	3 cut(s)	233, 650, 778
BciT130I	CCWGG	1 cut(s)	639
BciVI	GTATCC	2 cut(s)	691, 763
BclI	TGATCA	1 cut(s)	828
BcnI	CCSGG	1 cut(s)	847
BcoDI	GTCTC	1 cut(s)	950
BfaI	CTAG	2 cut(s)	614, 991
BfmI	CTRYAG	4 cut(s)	261, 360, 774, 817
BfuAI	ACCTGC	1 cut(s)	767
BfuI	GTATCC	2 cut(s)	691, 763
BisI	GCNGC	9 cut(s)	17, 261, 264, 267, 306, 360, 417, 504, 789
BlsI	GCNGC	9 cut(s)	18, 262, 265, 268, 307, 361, 418, 505, 790
Bme1390I	CCNGG	2 cut(s)	639, 847
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	190, 280
BmiI	GGNNCC	4 cut(s)	6, 281, 671, 732
BmrFI	CCNGG	2 cut(s)	639, 847
BmsI	GCATC	6 cut(s)	24, 247, 346, 490, 676, 775
BpiI	GAAGAC	1 cut(s)	848
BpuEI	CTTGAG	1 cut(s)	896
BpuMI	CCSGG	1 cut(s)	847
BsaI	GGTCTC	1 cut(s)	950
BsaJI	CCNNGG	2 cut(s)	183, 638
BsaXI	ACNNNNNCTCC	2 cut(s)	835, 865
Bsc4I	CCNNNNNNNGG	3 cut(s)	485, 776, 869
Bse1I	ACTGG	2 cut(s)	802, 922
Bse3DI	GCAATG	3 cut(s)	145, 327, 346
BseBI	CCWGG	1 cut(s)	639
BseDI	CCNNGG	2 cut(s)	183, 638
BseGI	GGATG	2 cut(s)	159, 225
BseLI	CCNNNNNNNGG	3 cut(s)	485, 776, 869
BseMI	GCAATG	3 cut(s)	145, 327, 346
BseNI	ACTGG	2 cut(s)	802, 922
BseSI	GKGCMC	2 cut(s)	61, 733
BseXI	GCAGC	7 cut(s)	3, 247, 275, 278, 346, 490, 775
Bsh1236I	CGCG	2 cut(s)	305, 407
BshFI	GGCC	3 cut(s)	191, 769, 862
BshNI	GGYRCC	2 cut(s)	669, 730
BsiHKAI	GWGCWC	2 cut(s)	61, 252
BsiSI	CCGG	1 cut(s)	846
BslFI	GGGAC	1 cut(s)	862
BslI	CCNNNNNNNGG	3 cut(s)	485, 776, 869
BsmAI	GTCTC	1 cut(s)	950
BsmFI	GGGAC	1 cut(s)	862
BsmI	GAATGC	1 cut(s)	491
BsnI	GGCC	3 cut(s)	191, 769, 862
Bso31I	GGTCTC	1 cut(s)	950
Bsp1286I	GDGCHC	3 cut(s)	61, 252, 733
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	124, 551, 828
BspACI	CCGC	5 cut(s)	68, 305, 407, 417, 762
BspANI	GGCC	3 cut(s)	191, 769, 862
BspFNI	CGCG	2 cut(s)	305, 407
BspLI	GGNNCC	4 cut(s)	6, 281, 671, 732
BspMAI	CTGCAG	3 cut(s)	265, 364, 778
BspMI	ACCTGC	1 cut(s)	767
BspPI	GGATC	1 cut(s)	559
BspT107I	GGYRCC	2 cut(s)	669, 730
BspTNI	GGTCTC	1 cut(s)	950
BsrBI	CCGCTC	1 cut(s)	762
BsrDI	GCAATG	3 cut(s)	145, 327, 346
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	802, 922
BssECI	CCNNGG	2 cut(s)	183, 638
BssMI	GATC	3 cut(s)	124, 551, 828
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	639
Bst4CI	ACNGT	1 cut(s)	30
Bst6I	CTCTTC	2 cut(s)	851, 953
BstAPI	GCANNNNNTGC	2 cut(s)	65, 292
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	538
BstENI	CCTNNNNNAGG	1 cut(s)	867
BstF5I	GGATG	2 cut(s)	159, 225
BstFNI	CGCG	2 cut(s)	305, 407
BstKTI	GATC	3 cut(s)	127, 554, 831
BstMAI	GTCTC	1 cut(s)	950
BstMBI	GATC	3 cut(s)	124, 551, 828
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 266, 292, 365, 413
BstNI	CCWGG	1 cut(s)	639
BstNSI	RCATGY	1 cut(s)	839
BstSCI	CCNGG	2 cut(s)	637, 845
BstSFI	CTRYAG	4 cut(s)	261, 360, 774, 817
BstSLI	GKGCMC	2 cut(s)	61, 733
BstUI	CGCG	2 cut(s)	305, 407
BstV1I	GCAGC	7 cut(s)	3, 247, 275, 278, 346, 490, 775
BstV2I	GAAGAC	1 cut(s)	848
BsuI	GTATCC	2 cut(s)	691, 763
BsuRI	GGCC	3 cut(s)	191, 769, 862
BtgZI	GCGATG	1 cut(s)	513
BtsCI	GGATG	2 cut(s)	159, 225
BtsIMutI	CAGTG	1 cut(s)	252
BveI	ACCTGC	1 cut(s)	767
Cac8I	GCNNGC	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	190, 280
Csp6I	GTAC	7 cut(s)	26, 130, 325, 347, 650, 670, 973
CviAII	CATG	2 cut(s)	836, 895
CviQI	GTAC	7 cut(s)	26, 130, 325, 347, 650, 670, 973
DdeI	CTNAG	1 cut(s)	538
DpnI	GATC	3 cut(s)	126, 553, 830
DpnII	GATC	3 cut(s)	124, 551, 828
EaeI	YGGCCR	1 cut(s)	767
Eam1104I	CTCTTC	2 cut(s)	851, 953
EarI	CTCTTC	2 cut(s)	851, 953
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	183
Eco147I	AGGCCT	1 cut(s)	862
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	950
Eco47I	GGWCC	1 cut(s)	280
Eco53kI	GAGCTC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	250
EcoNI	CCTNNNNNAGG	1 cut(s)	867
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	637
EcoT14I	CCWWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	2 cut(s)	839, 898
FaqI	GGGAC	1 cut(s)	862
FatI	CATG	2 cut(s)	835, 894
FauI	CCCGC	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	828
Fnu4HI	GCNGC	9 cut(s)	17, 261, 264, 267, 306, 360, 417, 504, 789
FokI	GGATG	2 cut(s)	166, 212
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	9 cut(s)	17, 261, 264, 267, 306, 360, 417, 504, 789
FspBI	CTAG	2 cut(s)	614, 991
GluI	GCNGC	9 cut(s)	17, 261, 264, 267, 306, 360, 417, 504, 789
HaeIII	GGCC	3 cut(s)	191, 769, 862
HapII	CCGG	1 cut(s)	846
Hin1II	CATG	2 cut(s)	839, 898
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	1 cut(s)	850
HpaII	CCGG	1 cut(s)	846
HphI	GGTGA	6 cut(s)	214, 523, 546, 627, 932, 973
Hpy166II	GTNNAC	4 cut(s)	59, 349, 441, 630
Hpy188I	TCNGA	3 cut(s)	402, 757, 855
Hpy188III	TCNNGA	3 cut(s)	245, 716, 913
Hpy8I	GTNNAC	4 cut(s)	59, 349, 441, 630
HpyAV	CCTTC	4 cut(s)	144, 251, 489, 544
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4V	TGCA	7 cut(s)	59, 263, 295, 362, 776, 791, 806
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 266, 292, 365, 413
HpyF3I	CTNAG	1 cut(s)	538
Hsp92II	CATG	2 cut(s)	839, 898
KpnI	GGTACC	1 cut(s)	673
Ksp22I	TGATCA	1 cut(s)	828
Kzo9I	GATC	3 cut(s)	124, 551, 828
LmnI	GCTCC	2 cut(s)	10, 24
Lsp1109I	GCAGC	7 cut(s)	3, 247, 275, 278, 346, 490, 775
LweI	GCATC	6 cut(s)	24, 247, 346, 490, 676, 775
MaeI	CTAG	2 cut(s)	614, 991
MaeIII	GTNAC	4 cut(s)	220, 409, 596, 920
MalI	GATC	3 cut(s)	126, 553, 830
MbiI	CCGCTC	1 cut(s)	762
MboI	GATC	3 cut(s)	124, 551, 828
MboII	GAAGA	6 cut(s)	368, 371, 853, 868, 940, 943
MhlI	GDGCHC	3 cut(s)	61, 252, 733
MlsI	TGGCCA	1 cut(s)	769
MluCI	AATT	7 cut(s)	97, 144, 274, 317, 508, 525, 823
MluNI	TGGCCA	1 cut(s)	769
MlyI	GAGTC	1 cut(s)	844
MmeI	TCCRAC	1 cut(s)	675
MnlI	CCTC	9 cut(s)	150, 181, 239, 358, 486, 689, 852, 863, 920
Mox20I	TGGCCA	1 cut(s)	769
MscI	TGGCCA	1 cut(s)	769
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	769
MspI	CCGG	1 cut(s)	846
MspR9I	CCNGG	2 cut(s)	639, 847
Mva1269I	GAATGC	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	639
MvnI	CGCG	2 cut(s)	305, 407
MwoI	GCNNNNNNNGC	5 cut(s)	65, 266, 292, 365, 413
NciI	CCSGG	1 cut(s)	847
NdeII	GATC	3 cut(s)	124, 551, 828
NlaIII	CATG	2 cut(s)	839, 898
NlaIV	GGNNCC	4 cut(s)	6, 281, 671, 732
NmuCI	GTSAC	2 cut(s)	220, 920
NspI	RCATGY	1 cut(s)	839
PceI	AGGCCT	1 cut(s)	862
PctI	GAATGC	1 cut(s)	491
PkrI	GCNGC	9 cut(s)	18, 262, 265, 268, 307, 361, 418, 505, 790
PleI	GAGTC	1 cut(s)	844
PpsI	GAGTC	1 cut(s)	844
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	4 cut(s)	6, 281, 671, 732
PspPI	GGNCC	2 cut(s)	190, 280
PstI	CTGCAG	3 cut(s)	265, 364, 778
RsaI	GTAC	7 cut(s)	27, 131, 326, 348, 651, 671, 974
RsaNI	GTAC	7 cut(s)	26, 130, 325, 347, 650, 670, 973
RseI	CAYNNNNRTG	1 cut(s)	354
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	9 cut(s)	17, 261, 264, 267, 306, 360, 417, 504, 789
Sau3AI	GATC	3 cut(s)	124, 551, 828
Sau96I	GGNCC	2 cut(s)	190, 280
SchI	GAGTC	1 cut(s)	844
ScrFI	CCNGG	2 cut(s)	639, 847
SduI	GDGCHC	3 cut(s)	61, 252, 733
SfaNI	GCATC	6 cut(s)	24, 247, 346, 490, 676, 775
SfcI	CTRYAG	4 cut(s)	261, 360, 774, 817
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	911
SmoI	CTYRAG	1 cut(s)	911
Sse9I	AATT	7 cut(s)	97, 144, 274, 317, 508, 525, 823
SseBI	AGGCCT	1 cut(s)	862
SsiI	CCGC	5 cut(s)	68, 305, 407, 417, 762
SspMI	CTAG	2 cut(s)	614, 991
SstI	GAGCTC	1 cut(s)	252
StuI	AGGCCT	1 cut(s)	862
StyD4I	CCNGG	2 cut(s)	637, 845
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	876
TasI	AATT	7 cut(s)	97, 144, 274, 317, 508, 525, 823
TatI	WGTACW	4 cut(s)	25, 129, 324, 346
TauI	GCSGC	2 cut(s)	308, 419
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	2 cut(s)	220, 920
TseI	GCWGC	7 cut(s)	16, 260, 263, 266, 359, 503, 788
Tsp45I	GTSAC	2 cut(s)	220, 920
TspDTI	ATGAA	3 cut(s)	357, 501, 918
TspRI	CASTG	1 cut(s)	259
VneI	GTGCAC	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	280
XagI	CCTNNNNNAGG	1 cut(s)	867
XapI	RAATTY	2 cut(s)	317, 508
XceI	RCATGY	1 cut(s)	839
XcmI	CCANNNNNNNNNTGG	1 cut(s)	983
XspI	CTAG	2 cut(s)	614, 991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.