FvH4_3g11580

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002150
Physical Location & Seq
Reverse (-)
6828183 .. 6830280
2098 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11580.t1

Sequence Viewer

Length: 1425 bp
ATGGAGACCCTTTACCTTGTTCTCTCTTTGGGTGCTGCTTTTCTCGCCTTTGCTCTCTTCGCATTCAAATCCGAAGATGGCAAGAACCTCCCACCAGGCAGCATGGGGTGGCCTATCGTGGGAGAAACTCTCGAGTTTCTTTTTGGAAAGCCTGAAAACTTTGTGTTCAAGAGGATGAAGAGGTACTCCCCTGACATCTTCAAGACAAAGATTCTCGGGGAGAAAACTGCTGTCATTTGTGGACCTAATGGCCACAAGTTTCTCTTCAGCAATGAGCAGAAGTACTTCACAGCATTCCGTCCACACTCTATGCAGAAGATGTTCAGGTCGTACAAGGCTGCTACTCCTGCTGCTGCTCCGAAACAGATTGCTCGCGATGAAGAGTCGAAAGTACTAAAGTCACCGGGGTTCCTTAAGCCAGAAGCATTGATGAGGTACTTGGGGAAGATGGACTCAATCACCCAAGAACAGATGAAGGTGTACTGGGAAGGCAAGAACCAGGTCTTGGCCTACCCTTTGGCCAAGACTTTGACTCTTAGTCTTGCCTGCAGATTCTTCTTGGGGATTGATGAGCCGGAGAGGATTGCTAGGCTGGTGGAGAACTTTGATGATGTGACTGTGGGGATGCACTCACTTATTGTGAACTTCCCCGGAACCATTTTCCACAGGGCAACAAAAGCAGCTGATGCAATCAGGAAGGAGTTGAAGACTGTGATCCAGGAGAAGAAGGCTGCAATGGCATCAGGAGCACCTATGATGGATATTCTGACACATATGATTGTGGCAAGTGATCCATCTGGGCAACACATGCCTGAGGCTGAGATTGCAGATAAGATGATGGGTTTGTTGACTGCTGGGTACAGTACTGTGGCTACAGCTATGACTTTCTTCATGAAATATGTGGGAGAAAGGCCTGACATCTATGCCAAGGTCCTAGCAGAACAAATGGACATTGCAGAGTCAAAGAAGCCAGGACAACTTTTGGAATGGGAAGACTTGAACAAGATGAAGTACTCATGGAATGTCATATATGAGGTTATGAGATTCACTCCACCACTTCAGGGAACATTCAGAGAGGCTTTGACAGATTTTGAGTATGCCGGTTACACCATTCCCAAGGGCTGGAAGGTGTATTGGACTGTTAGCACAACAAACATGAACCCAGAATACTTCCCCAACCCAGAAAAGTTTGACCCCTCAAGATACGATGACTTGAGTGCATTCCCACCATTCACATTTGTTCCATTTGGAGGAGGACCAAGAATGTGCCCAGGTAAAGAGTATGCTAGGCTTGCGATACTCACTTTTGTTCACAATGTGGTCAAGAGGTTCAAGTGGGAAGTGGTGTTTCCTAAGGAGAAGATCACAGGTGATATGATGCCTACCCCAGAAAAAGGACTTCCAGTTCGTCTTACTTGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

475

Amino Acids

53.78

Weight (kDa)

8.97

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 31 - 449 4.3e-61 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 505, 1122
AccII CGCG 1 cut(s) 375
AclWI GGATC 2 cut(s) 709, 785
AcoI YGGCCR 2 cut(s) 250, 519
AcuI CTGAAG 2 cut(s) 250, 1043
AdeI CACNNNGTG 1 cut(s) 1318
AfaI GTAC 9 cut(s) 185, 284, 332, 393, 437, 482, 860, 865, 1013
AfiI CCNNNNNNNGG 6 cut(s) 119, 505, 1061, 1122, 1250, 1394
AflII CTTAAG 1 cut(s) 413
AgsI TTSAA 6 cut(s) 67, 169, 202, 706, 1000, 1333
AhdI GACNNNNNGTC 1 cut(s) 537
AjnI CCWGG 5 cut(s) 94, 498, 717, 970, 1270
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AloI GAACNNNNNNTCC 2 cut(s) 1389, 1421
AluBI AGCT 2 cut(s) 683, 878
AluI AGCT 2 cut(s) 683, 878
Alw21I GWGCWC 1 cut(s) 751
AlwI GGATC 2 cut(s) 709, 785
Ama87I CYCGRG 2 cut(s) 131, 215
AoxI GGCC 5 cut(s) 110, 250, 507, 519, 911
ApeKI GCWGC 7 cut(s) 35, 99, 338, 350, 353, 680, 731
ArsI GACNNNNNNTTYG 2 cut(s) 1389, 1421
Asp700I GAANNNNTTC 2 cut(s) 284, 320
AspS9I GGNCC 3 cut(s) 242, 931, 1256
AsuC2I CCSGG 2 cut(s) 405, 651
AsuHPI GGTGA 3 cut(s) 393, 451, 1382
AvaI CYCGRG 2 cut(s) 131, 215
AvaII GGWCC 3 cut(s) 242, 931, 1256
AxyI CCTNAGG 2 cut(s) 813, 1353
BaeGI GKGCMC 1 cut(s) 1271
BalI TGGCCA 2 cut(s) 252, 521
BbsI GAAGAC 2 cut(s) 713, 999
Bbv12I GWGCWC 1 cut(s) 751
BbvI GCAGC 7 cut(s) 22, 111, 325, 337, 340, 692, 718
BccI CCATC 5 cut(s) 71, 442, 751, 802, 832
BciT130I CCWGG 5 cut(s) 96, 500, 719, 972, 1272
BcnI CCSGG 2 cut(s) 405, 651
BfaI CTAG 4 cut(s) 588, 935, 1287, 1423
BfmI CTRYAG 2 cut(s) 547, 873
BfrI CTTAAG 1 cut(s) 413
BisI GCNGC 7 cut(s) 36, 100, 339, 351, 354, 681, 732
BlsI GCNGC 7 cut(s) 37, 101, 340, 352, 355, 682, 733
BmcAI AGTACT 4 cut(s) 284, 393, 865, 1013
Bme1390I CCNGG 7 cut(s) 96, 405, 500, 651, 719, 972, 1272
Bme18I GGWCC 3 cut(s) 242, 931, 1256
BmeRI GACNNNNNGTC 1 cut(s) 537
BmeT110I CYCGRG 2 cut(s) 131, 215
BmgT120I GGNCC 3 cut(s) 242, 931, 1256
BmiI GGNNCC 2 cut(s) 410, 655
BmrFI CCNGG 7 cut(s) 96, 405, 500, 651, 719, 972, 1272
BmrI ACTGGG 1 cut(s) 493
BmsI GCATC 4 cut(s) 615, 676, 749, 1368
BmuI ACTGGG 1 cut(s) 493
BpiI GAAGAC 2 cut(s) 713, 999
BplI GAGNNNNNCTC 4 cut(s) 114, 146, 1033, 1065
BpuEI CTTGAG 2 cut(s) 1183, 1234
BpuMI CCSGG 2 cut(s) 405, 651
BsaJI CCNNGG 5 cut(s) 404, 649, 927, 1116, 1270
Bsc4I CCNNNNNNNGG 6 cut(s) 119, 505, 1061, 1122, 1250, 1394
Bse118I RCCGGY 1 cut(s) 1100
Bse1I ACTGG 2 cut(s) 488, 1403
Bse21I CCTNAGG 2 cut(s) 813, 1353
Bse3DI GCAATG 3 cut(s) 277, 741, 951
BseBI CCWGG 5 cut(s) 96, 500, 719, 972, 1272
BseDI CCNNGG 5 cut(s) 404, 649, 927, 1116, 1270
BseGI GGATG 2 cut(s) 180, 630
BseLI CCNNNNNNNGG 6 cut(s) 119, 505, 1061, 1122, 1250, 1394
BseMI GCAATG 3 cut(s) 277, 741, 951
BseMII CTCAG 2 cut(s) 804, 810
BseNI ACTGG 2 cut(s) 488, 1403
BseRI GAGGAG 1 cut(s) 1266
BseSI GKGCMC 1 cut(s) 1271
BseXI GCAGC 7 cut(s) 22, 111, 325, 337, 340, 692, 718
BseYI CCCAGC 1 cut(s) 854
Bsh1236I CGCG 1 cut(s) 375
BshFI GGCC 5 cut(s) 112, 252, 509, 521, 913
BsiHKAI GWGCWC 1 cut(s) 751
BsiHKCI CYCGRG 2 cut(s) 131, 215
BsiSI CCGG 4 cut(s) 404, 575, 651, 1101
BslI CCNNNNNNNGG 6 cut(s) 119, 505, 1061, 1122, 1250, 1394
BsmI GAATGC 3 cut(s) 62, 293, 1220
BsnI GGCC 5 cut(s) 112, 252, 509, 521, 913
BsoBI CYCGRG 2 cut(s) 131, 215
Bsp1286I GDGCHC 2 cut(s) 751, 1271
Bsp143I GATC 3 cut(s) 714, 790, 1362
Bsp68I TCGCGA 1 cut(s) 375
BspANI GGCC 5 cut(s) 112, 252, 509, 521, 913
BspCNI CTCAG 2 cut(s) 805, 811
BspFNI CGCG 1 cut(s) 375
BspHI TCATGA 1 cut(s) 891
BspLI GGNNCC 2 cut(s) 410, 655
BspMAI CTGCAG 1 cut(s) 551
BspPI GGATC 2 cut(s) 709, 785
BspTI CTTAAG 1 cut(s) 413
BsrDI GCAATG 3 cut(s) 277, 741, 951
BsrFI RCCGGY 1 cut(s) 1100
BsrI ACTGG 2 cut(s) 488, 1403
BssAI RCCGGY 1 cut(s) 1100
BssECI CCNNGG 5 cut(s) 404, 649, 927, 1116, 1270
BssMI GATC 3 cut(s) 714, 790, 1362
BssT1I CCWWGG 2 cut(s) 927, 1116
Bst2UI CCWGG 5 cut(s) 96, 500, 719, 972, 1272
Bst4CI ACNGT 5 cut(s) 619, 712, 863, 868, 1141
Bst6I CTCTTC 4 cut(s) 62, 173, 269, 375
BstAFI CTTAAG 1 cut(s) 413
BstAPI GCANNNNNTGC 2 cut(s) 686, 808
BstC8I GCNNGC 3 cut(s) 373, 547, 1293
BstDEI CTNAG 4 cut(s) 536, 813, 819, 1353
BstF5I GGATG 2 cut(s) 180, 630
BstFNI CGCG 1 cut(s) 375
BstKTI GATC 3 cut(s) 717, 793, 1365
BstMBI GATC 3 cut(s) 714, 790, 1362
BstNI CCWGG 5 cut(s) 96, 500, 719, 972, 1272
BstNSI RCATGY 1 cut(s) 811
BstSCI CCNGG 7 cut(s) 94, 403, 498, 649, 717, 970, 1270
BstSFI CTRYAG 2 cut(s) 547, 873
BstSLI GKGCMC 1 cut(s) 1271
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 7 cut(s) 22, 111, 325, 337, 340, 692, 718
BstV2I GAAGAC 2 cut(s) 713, 999
Bsu36I CCTNAGG 2 cut(s) 813, 1353
BsuRI GGCC 5 cut(s) 112, 252, 509, 521, 913
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 2 cut(s) 180, 630
BtuMI TCGCGA 1 cut(s) 375
Cac8I GCNNGC 3 cut(s) 373, 547, 1293
CciI TCATGA 1 cut(s) 891
Cfr10I RCCGGY 1 cut(s) 1100
Cfr13I GGNCC 3 cut(s) 242, 931, 1256
CsiI ACCWGGT 1 cut(s) 498
Csp6I GTAC 9 cut(s) 184, 283, 331, 392, 436, 481, 859, 864, 1012
CviAII CATG 5 cut(s) 103, 808, 892, 1017, 1156
CviQI GTAC 9 cut(s) 184, 283, 331, 392, 436, 481, 859, 864, 1012
DdeI CTNAG 4 cut(s) 536, 813, 819, 1353
DpnI GATC 3 cut(s) 716, 792, 1364
DpnII GATC 3 cut(s) 714, 790, 1362
DraIII CACNNNGTG 1 cut(s) 1318
DriI GACNNNNNGTC 1 cut(s) 537
EaeI YGGCCR 2 cut(s) 250, 519
Eam1104I CTCTTC 4 cut(s) 62, 173, 269, 375
Eam1105I GACNNNNNGTC 1 cut(s) 537
EarI CTCTTC 4 cut(s) 62, 173, 269, 375
Eco130I CCWWGG 2 cut(s) 927, 1116
Eco147I AGGCCT 1 cut(s) 913
Eco47I GGWCC 3 cut(s) 242, 931, 1256
Eco57I CTGAAG 2 cut(s) 250, 1043
Eco81I CCTNAGG 2 cut(s) 813, 1353
Eco88I CYCGRG 2 cut(s) 131, 215
EcoO109I RGGNCCY 1 cut(s) 931
EcoRII CCWGG 5 cut(s) 94, 498, 717, 970, 1270
EcoT14I CCWWGG 2 cut(s) 927, 1116
ErhI CCWWGG 2 cut(s) 927, 1116
FaeI CATG 5 cut(s) 106, 811, 895, 1020, 1159
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FatI CATG 5 cut(s) 102, 807, 891, 1016, 1155
FauNDI CATATG 1 cut(s) 774
Fnu4HI GCNGC 7 cut(s) 36, 100, 339, 351, 354, 681, 732
FokI GGATG 2 cut(s) 187, 637
Fsp4HI GCNGC 7 cut(s) 36, 100, 339, 351, 354, 681, 732
FspBI CTAG 4 cut(s) 588, 935, 1287, 1423
GluI GCNGC 7 cut(s) 36, 100, 339, 351, 354, 681, 732
GsaI CCCAGC 1 cut(s) 858
HaeIII GGCC 5 cut(s) 112, 252, 509, 521, 913
HapII CCGG 4 cut(s) 404, 575, 651, 1101
Hin1II CATG 5 cut(s) 106, 811, 895, 1020, 1159
HincII GTYRAC 1 cut(s) 849
HindII GTYRAC 1 cut(s) 849
HinfI GANTC 7 cut(s) 211, 383, 452, 532, 552, 959, 1044
HpaII CCGG 4 cut(s) 404, 575, 651, 1101
HphI GGTGA 3 cut(s) 393, 451, 1382
Hpy166II GTNNAC 6 cut(s) 242, 302, 481, 643, 849, 1312
Hpy188I TCNGA 4 cut(s) 73, 360, 768, 1073
Hpy188III TCNNGA 9 cut(s) 131, 169, 202, 374, 694, 744, 892, 1200, 1324
Hpy8I GTNNAC 6 cut(s) 242, 302, 481, 643, 849, 1312
HpyAV CCTTC 5 cut(s) 469, 482, 691, 721, 1120
HpyCH4III ACNGT 5 cut(s) 619, 712, 863, 868, 1141
HpyCH4V TGCA 8 cut(s) 313, 549, 628, 689, 734, 827, 956, 1220
HpyF3I CTNAG 4 cut(s) 536, 813, 819, 1353
Hsp92II CATG 5 cut(s) 106, 811, 895, 1020, 1159
Kzo9I GATC 3 cut(s) 714, 790, 1362
LmnI GCTCC 2 cut(s) 361, 746
Lsp1109I GCAGC 7 cut(s) 22, 111, 325, 337, 340, 692, 718
LweI GCATC 4 cut(s) 615, 676, 749, 1368
MabI ACCWGGT 1 cut(s) 498
MaeI CTAG 4 cut(s) 588, 935, 1287, 1423
MaeIII GTNAC 4 cut(s) 399, 613, 1103, 1418
MalI GATC 3 cut(s) 716, 792, 1364
MboI GATC 3 cut(s) 714, 790, 1362
MhlI GDGCHC 2 cut(s) 751, 1271
MlsI TGGCCA 2 cut(s) 252, 521
MluNI TGGCCA 2 cut(s) 252, 521
MlyI GAGTC 4 cut(s) 392, 446, 526, 968
Mox20I TGGCCA 2 cut(s) 252, 521
MroXI GAANNNNTTC 2 cut(s) 284, 320
MscI TGGCCA 2 cut(s) 252, 521
MseI TTAA 1 cut(s) 414
Msp20I TGGCCA 2 cut(s) 252, 521
MspA1I CMGCKG 1 cut(s) 683
MspCI CTTAAG 1 cut(s) 413
MspI CCGG 4 cut(s) 404, 575, 651, 1101
MspR9I CCNGG 7 cut(s) 96, 405, 500, 651, 719, 972, 1272
Mva1269I GAATGC 3 cut(s) 62, 293, 1220
MvaI CCWGG 5 cut(s) 96, 500, 719, 972, 1272
MvnI CGCG 1 cut(s) 375
NciI CCSGG 2 cut(s) 405, 651
NdeI CATATG 1 cut(s) 774
NdeII GATC 3 cut(s) 714, 790, 1362
NlaIII CATG 5 cut(s) 106, 811, 895, 1020, 1159
NlaIV GGNNCC 2 cut(s) 410, 655
NmuCI GTSAC 3 cut(s) 399, 613, 1418
NruI TCGCGA 1 cut(s) 375
NspI RCATGY 1 cut(s) 811
PaeR7I CTCGAG 1 cut(s) 131
PagI TCATGA 1 cut(s) 891
PceI AGGCCT 1 cut(s) 913
PctI GAATGC 3 cut(s) 62, 293, 1220
PdmI GAANNNNTTC 2 cut(s) 284, 320
PfeI GAWTC 3 cut(s) 211, 552, 1044
PflMI CCANNNNNTGG 2 cut(s) 505, 1122
PfoI TCCNGGA 1 cut(s) 717
PkrI GCNGC 7 cut(s) 37, 101, 340, 352, 355, 682, 733
PleI GAGTC 4 cut(s) 391, 446, 526, 967
PpsI GAGTC 4 cut(s) 391, 446, 526, 967
PpuMI RGGWCCY 1 cut(s) 931
Psp5II RGGWCCY 1 cut(s) 931
Psp6I CCWGG 5 cut(s) 94, 498, 717, 970, 1270
PspFI CCCAGC 1 cut(s) 854
PspGI CCWGG 5 cut(s) 94, 498, 717, 970, 1270
PspN4I GGNNCC 2 cut(s) 410, 655
PspPI GGNCC 3 cut(s) 242, 931, 1256
PspPPI RGGWCCY 1 cut(s) 931
PsrI GAACNNNNNNTAC 2 cut(s) 1151, 1183
PstI CTGCAG 1 cut(s) 551
PvuII CAGCTG 1 cut(s) 683
RruI TCGCGA 1 cut(s) 375
RsaI GTAC 9 cut(s) 185, 284, 332, 393, 437, 482, 860, 865, 1013
RsaNI GTAC 9 cut(s) 184, 283, 331, 392, 436, 481, 859, 864, 1012
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 7 cut(s) 36, 100, 339, 351, 354, 681, 732
Sau3AI GATC 3 cut(s) 714, 790, 1362
Sau96I GGNCC 3 cut(s) 242, 931, 1256
ScaI AGTACT 4 cut(s) 284, 393, 865, 1013
SchI GAGTC 4 cut(s) 392, 446, 526, 968
ScrFI CCNGG 7 cut(s) 96, 405, 500, 651, 719, 972, 1272
SduI GDGCHC 2 cut(s) 751, 1271
SexAI ACCWGGT 1 cut(s) 498
SfaNI GCATC 4 cut(s) 615, 676, 749, 1368
SfcI CTRYAG 2 cut(s) 547, 873
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 3 cut(s) 242, 931, 1256
SlaI CTCGAG 1 cut(s) 131
SmlI CTYRAG 4 cut(s) 131, 413, 1198, 1213
SmoI CTYRAG 4 cut(s) 131, 413, 1198, 1213
SseBI AGGCCT 1 cut(s) 913
SspMI CTAG 4 cut(s) 588, 935, 1287, 1423
StuI AGGCCT 1 cut(s) 913
StyD4I CCNGG 7 cut(s) 94, 403, 498, 649, 717, 970, 1270
StyI CCWWGG 2 cut(s) 927, 1116
TaaI ACNGT 5 cut(s) 619, 712, 863, 868, 1141
TaqI TCGA 2 cut(s) 132, 386
TatI WGTACW 5 cut(s) 282, 391, 480, 863, 1011
TfiI GAWTC 3 cut(s) 211, 552, 1044
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TseFI GTSAC 3 cut(s) 399, 613, 1418
TseI GCWGC 7 cut(s) 35, 99, 338, 350, 353, 680, 731
Tsp45I GTSAC 3 cut(s) 399, 613, 1418
TspDTI ATGAA 7 cut(s) 191, 393, 488, 880, 908, 1022, 1172
TspGWI ACGGA 1 cut(s) 287
Van91I CCANNNNNTGG 2 cut(s) 505, 1122
Vha464I CTTAAG 1 cut(s) 413
VpaK11BI GGWCC 3 cut(s) 242, 931, 1256
XceI RCATGY 1 cut(s) 811
XhoI CTCGAG 1 cut(s) 131
XmnI GAANNNNTTC 2 cut(s) 284, 320
XspI CTAG 4 cut(s) 588, 935, 1287, 1423
ZrmI AGTACT 4 cut(s) 284, 393, 865, 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.