Rroxscaffold_1G00059220

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
81215045 .. 81216927
1883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00059220.1

Sequence Viewer

Length: 1335 bp
ATGGAGACCCTTTACCTTGTTCTCTCTTTGGGTGCTGCACTTTTCGCCTTTGCCCTCTTCGCATTCAAATCTGAAGATGGCAAGAACCTCCCACCAGGCAGCATGGGGTGGCCTATTGTGGGAGAAACTCTCGAGTTTCTTTTTGGCAAGCCGGAAAACTTTGTGTTCAAGAGGATGAAGAGGTACTCCCCTGACATCTTCAAGACCAAGATTCTTGGGGAGAAAACCGCTGTCATTTGTGGACCTAATGGACACAAATTTCTCTTCACCAATGAGCAAAAATACTTCACAGCATTCCGTCCACACTCCATGCAGAAGATGTTCAGGTCATACAAGGCTGCTGCAGCTGCAGCTCCTGCTCCGAAACAGCCTGCTCGCGACGAAGAGGCGAAAGTACTAAGGTCACCGGGGTTCCTTAAGCCAGAAGCATTGATGAGGTACTTGGGGAAAATGGACTCAATCACCCAAGAACAGATGAAGGTCTACTGGGAAGGCAAGAATCAGGTCTTGGCCTACCCTTTGGCCAAGACTTTGACTCTTAGTCTTGCCTGCAGATTCTTCTTGGGGATTGATGAGCCGGAGAGGATTGCTAGGCTTGTGGAGAACTTTGACGATGTGACTGTGGGGATGCACTCACTTATTGTGAACTTCCCAGGAACCATTTTCTACAGAGCAACAAAAGCAGCTGATGCGATCAGGAAGGAGTTGAAGACTGTGATCCAGGAGAAGAAGGCTGCAATAGCATCAGGAGCACCCATGATGGATATTCTGACACATATGATTGTGGCCAGTGACCCATCTGGGCAACACATGCCTGAGGCTGAGATTGCTGATAAGATGATGGGTTTGTTGACTGCTGGGTATAGTACTGTGGCTACTGCTATGACTTTCTTCATGAAGTATGTGGGAGAAAGGCCTGACATCTATGCCAAGGTCCTAGCAGAACAAATGGAGATTGCAGAGTCAAAAAATCCTGGACAACTTTTGGAATGGGATGACTTGAACAAGATGAAGTACTCATGGAATGTCATCTATGAGGTATATTGGACTGTCAGCACAACAAACATGAACCCAGAATACTTCCCCAACCCAGAGAAGTTTGACCCCTCAAGATACGATAACATAAGCGCATTCCCACCATTCACATTTGTTCCATTTGGAGGAGGACCAAGAATGTGCCCTGGAAAAGAGTATGCTAGGCTTGCAATACTCACTTTTGTTCACAATGTGGTCAAGAGGTTCAAGTGGGAAGTGGTGTTTCCCAACGAAAAGATCACAGGTGATATGATGCCTACCCCAGAAAAAGGACTTCCAATTCGCCTTACTTGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

444

Amino Acids

50.22

Weight (kDa)

8.83

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 31 - 347 3.7e-23 Cytochrome P450
p450 PF00067 348 - 419 5.1e-19 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 483
AccII CGCG 1 cut(s) 378
AciI CCGC 1 cut(s) 228
AclWI GGATC 1 cut(s) 712
AcoI YGGCCR 2 cut(s) 522, 786
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 93
AdeI CACNNNGTG 1 cut(s) 1228
AfaI GTAC 5 cut(s) 185, 396, 440, 868, 1016
AfiI CCNNNNNNNGG 3 cut(s) 119, 1160, 1304
AflII CTTAAG 1 cut(s) 416
AgsI TTSAA 6 cut(s) 67, 169, 202, 709, 1003, 1243
AhdI GACNNNNNGTC 1 cut(s) 540
AjnI CCWGG 5 cut(s) 94, 652, 720, 973, 1180
AjuI GAANNNNNNNTTGG 2 cut(s) 491, 523
AluBI AGCT 3 cut(s) 347, 353, 686
AluI AGCT 3 cut(s) 347, 353, 686
Alw21I GWGCWC 1 cut(s) 754
AlwI GGATC 1 cut(s) 712
AlwNI CAGNNNCTG 1 cut(s) 356
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 5 cut(s) 110, 510, 522, 786, 914
ApeKI GCWGC 9 cut(s) 35, 99, 338, 341, 344, 347, 350, 683, 734
ApoI RAATTY 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 1299, 1331
Asp700I GAANNNNTTC 1 cut(s) 320
AspLEI GCGC 1 cut(s) 1130
AspS9I GGNCC 3 cut(s) 242, 934, 1166
AsuC2I CCSGG 1 cut(s) 408
AsuHPI GGTGA 4 cut(s) 259, 396, 454, 1292
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 3 cut(s) 242, 934, 1166
AxyI CCTNAGG 1 cut(s) 816
BaeGI GKGCMC 1 cut(s) 1181
BalI TGGCCA 2 cut(s) 524, 788
BbsI GAAGAC 1 cut(s) 716
Bbv12I GWGCWC 1 cut(s) 754
BbvI GCAGC 9 cut(s) 22, 111, 325, 328, 334, 356, 362, 695, 721
BccI CCATC 4 cut(s) 71, 754, 805, 835
BciT130I CCWGG 5 cut(s) 96, 654, 722, 975, 1182
BcnI CCSGG 1 cut(s) 408
BfaI CTAG 4 cut(s) 591, 938, 1197, 1333
BfmI CTRYAG 4 cut(s) 342, 348, 550, 667
BfrI CTTAAG 1 cut(s) 416
BisI GCNGC 9 cut(s) 36, 100, 339, 342, 345, 348, 351, 684, 735
BlsI GCNGC 9 cut(s) 37, 101, 340, 343, 346, 349, 352, 685, 736
BmcAI AGTACT 3 cut(s) 396, 868, 1016
Bme1390I CCNGG 6 cut(s) 96, 408, 654, 722, 975, 1182
Bme18I GGWCC 3 cut(s) 242, 934, 1166
BmeRI GACNNNNNGTC 1 cut(s) 540
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 3 cut(s) 242, 934, 1166
BmiI GGNNCC 2 cut(s) 413, 658
BmrFI CCNGG 6 cut(s) 96, 408, 654, 722, 975, 1182
BmrI ACTGGG 1 cut(s) 496
BmsI GCATC 4 cut(s) 618, 679, 752, 1278
BmuI ACTGGG 1 cut(s) 496
BpiI GAAGAC 1 cut(s) 716
BplI GAGNNNNNCTC 2 cut(s) 114, 146
BpuEI CTTGAG 1 cut(s) 1093
BpuMI CCSGG 1 cut(s) 408
BsaJI CCNNGG 4 cut(s) 407, 652, 930, 1180
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 1160, 1304
Bse1I ACTGG 2 cut(s) 491, 789
Bse21I CCTNAGG 1 cut(s) 816
BseBI CCWGG 5 cut(s) 96, 654, 722, 975, 1182
BseDI CCNNGG 4 cut(s) 407, 652, 930, 1180
BseGI GGATG 3 cut(s) 180, 633, 1000
BseLI CCNNNNNNNGG 3 cut(s) 119, 1160, 1304
BseMII CTCAG 2 cut(s) 807, 813
BseNI ACTGG 2 cut(s) 491, 789
BseRI GAGGAG 1 cut(s) 1176
BseSI GKGCMC 1 cut(s) 1181
BseXI GCAGC 9 cut(s) 22, 111, 325, 328, 334, 356, 362, 695, 721
BseYI CCCAGC 1 cut(s) 857
BsgI GTGCAG 1 cut(s) 21
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 5 cut(s) 112, 512, 524, 788, 916
BsiHKAI GWGCWC 1 cut(s) 754
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 3 cut(s) 152, 407, 578
BslI CCNNNNNNNGG 3 cut(s) 119, 1160, 1304
BsmI GAATGC 3 cut(s) 62, 293, 1130
BsnI GGCC 5 cut(s) 112, 512, 524, 788, 916
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 754, 1181
Bsp143I GATC 3 cut(s) 693, 717, 1272
Bsp68I TCGCGA 1 cut(s) 378
BspACI CCGC 1 cut(s) 228
BspANI GGCC 5 cut(s) 112, 512, 524, 788, 916
BspCNI CTCAG 2 cut(s) 808, 814
BspFNI CGCG 1 cut(s) 378
BspHI TCATGA 1 cut(s) 894
BspLI GGNNCC 2 cut(s) 413, 658
BspMAI CTGCAG 3 cut(s) 346, 352, 554
BspPI GGATC 1 cut(s) 712
BspTI CTTAAG 1 cut(s) 416
BsrI ACTGG 2 cut(s) 491, 789
BssECI CCNNGG 4 cut(s) 407, 652, 930, 1180
BssMI GATC 3 cut(s) 693, 717, 1272
BssT1I CCWWGG 1 cut(s) 930
Bst2UI CCWGG 5 cut(s) 96, 654, 722, 975, 1182
Bst4CI ACNGT 4 cut(s) 622, 715, 871, 1051
Bst6I CTCTTC 4 cut(s) 62, 173, 269, 378
BstAFI CTTAAG 1 cut(s) 416
BstAPI GCANNNNNTGC 3 cut(s) 356, 689, 811
BstC8I GCNNGC 5 cut(s) 149, 372, 376, 550, 1203
BstDEI CTNAG 4 cut(s) 398, 539, 816, 822
BstEII GGTNACC 1 cut(s) 402
BstF5I GGATG 3 cut(s) 180, 633, 1000
BstFNI CGCG 1 cut(s) 378
BstHHI GCGC 1 cut(s) 1130
BstKTI GATC 3 cut(s) 696, 720, 1275
BstMBI GATC 3 cut(s) 693, 717, 1272
BstNI CCWGG 5 cut(s) 96, 654, 722, 975, 1182
BstNSI RCATGY 1 cut(s) 814
BstPI GGTNACC 1 cut(s) 402
BstSCI CCNGG 6 cut(s) 94, 406, 652, 720, 973, 1180
BstSFI CTRYAG 4 cut(s) 342, 348, 550, 667
BstSLI GKGCMC 1 cut(s) 1181
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 9 cut(s) 22, 111, 325, 328, 334, 356, 362, 695, 721
BstV2I GAAGAC 1 cut(s) 716
Bsu36I CCTNAGG 1 cut(s) 816
BsuRI GGCC 5 cut(s) 112, 512, 524, 788, 916
BtsCI GGATG 3 cut(s) 180, 633, 1000
BtsIMutI CAGTG 1 cut(s) 796
BtuMI TCGCGA 1 cut(s) 378
Cac8I GCNNGC 5 cut(s) 149, 372, 376, 550, 1203
CaiI CAGNNNCTG 1 cut(s) 356
CciI TCATGA 1 cut(s) 894
CfoI GCGC 1 cut(s) 1130
Cfr13I GGNCC 3 cut(s) 242, 934, 1166
Csp6I GTAC 5 cut(s) 184, 395, 439, 867, 1015
CviAII CATG 7 cut(s) 103, 310, 757, 811, 895, 1020, 1066
CviQI GTAC 5 cut(s) 184, 395, 439, 867, 1015
DdeI CTNAG 4 cut(s) 398, 539, 816, 822
DpnI GATC 3 cut(s) 695, 719, 1274
DpnII GATC 3 cut(s) 693, 717, 1272
DraIII CACNNNGTG 1 cut(s) 1228
DriI GACNNNNNGTC 1 cut(s) 540
EaeI YGGCCR 2 cut(s) 522, 786
Eam1104I CTCTTC 4 cut(s) 62, 173, 269, 378
Eam1105I GACNNNNNGTC 1 cut(s) 540
EarI CTCTTC 4 cut(s) 62, 173, 269, 378
Eco130I CCWWGG 1 cut(s) 930
Eco147I AGGCCT 1 cut(s) 916
Eco47I GGWCC 3 cut(s) 242, 934, 1166
Eco57I CTGAAG 1 cut(s) 93
Eco81I CCTNAGG 1 cut(s) 816
Eco88I CYCGRG 1 cut(s) 131
Eco91I GGTNACC 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 934
EcoO65I GGTNACC 1 cut(s) 402
EcoRII CCWGG 5 cut(s) 94, 652, 720, 973, 1180
EcoT14I CCWWGG 1 cut(s) 930
ErhI CCWWGG 1 cut(s) 930
FaeI CATG 7 cut(s) 106, 313, 760, 814, 898, 1023, 1069
FatI CATG 7 cut(s) 102, 309, 756, 810, 894, 1019, 1065
FauNDI CATATG 1 cut(s) 777
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 9 cut(s) 36, 100, 339, 342, 345, 348, 351, 684, 735
FokI GGATG 3 cut(s) 187, 640, 1007
Fsp4HI GCNGC 9 cut(s) 36, 100, 339, 342, 345, 348, 351, 684, 735
FspBI CTAG 4 cut(s) 591, 938, 1197, 1333
GlaI GCGC 1 cut(s) 1129
GluI GCNGC 9 cut(s) 36, 100, 339, 342, 345, 348, 351, 684, 735
GsaI CCCAGC 1 cut(s) 861
HaeIII GGCC 5 cut(s) 112, 512, 524, 788, 916
HapII CCGG 3 cut(s) 152, 407, 578
HhaI GCGC 1 cut(s) 1130
Hin1II CATG 7 cut(s) 106, 313, 760, 814, 898, 1023, 1069
Hin6I GCGC 1 cut(s) 1128
HinP1I GCGC 1 cut(s) 1128
HincII GTYRAC 1 cut(s) 852
HindII GTYRAC 1 cut(s) 852
HinfI GANTC 6 cut(s) 211, 455, 499, 535, 555, 962
HpaII CCGG 3 cut(s) 152, 407, 578
HphI GGTGA 4 cut(s) 259, 396, 454, 1292
Hpy166II GTNNAC 6 cut(s) 242, 302, 484, 646, 852, 1222
Hpy188I TCNGA 3 cut(s) 73, 363, 771
Hpy188III TCNNGA 9 cut(s) 131, 169, 202, 377, 697, 747, 895, 1110, 1234
Hpy8I GTNNAC 6 cut(s) 242, 302, 484, 646, 852, 1222
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 4 cut(s) 472, 485, 694, 724
HpyCH4III ACNGT 4 cut(s) 622, 715, 871, 1051
HpyCH4V TGCA 9 cut(s) 38, 313, 344, 350, 552, 631, 737, 959, 1205
HpyF3I CTNAG 4 cut(s) 398, 539, 816, 822
Hsp92II CATG 7 cut(s) 106, 313, 760, 814, 898, 1023, 1069
HspAI GCGC 1 cut(s) 1128
Kzo9I GATC 3 cut(s) 693, 717, 1272
LmnI GCTCC 3 cut(s) 358, 364, 749
Lsp1109I GCAGC 9 cut(s) 22, 111, 325, 328, 334, 356, 362, 695, 721
LweI GCATC 4 cut(s) 618, 679, 752, 1278
MaeI CTAG 4 cut(s) 591, 938, 1197, 1333
MaeIII GTNAC 4 cut(s) 402, 616, 791, 1328
MalI GATC 3 cut(s) 695, 719, 1274
MboI GATC 3 cut(s) 693, 717, 1272
MhlI GDGCHC 2 cut(s) 754, 1181
MlsI TGGCCA 2 cut(s) 524, 788
MluCI AATT 2 cut(s) 257, 1314
MluNI TGGCCA 2 cut(s) 524, 788
MlyI GAGTC 3 cut(s) 449, 529, 971
Mox20I TGGCCA 2 cut(s) 524, 788
MroXI GAANNNNTTC 1 cut(s) 320
MscI TGGCCA 2 cut(s) 524, 788
MseI TTAA 1 cut(s) 417
Msp20I TGGCCA 2 cut(s) 524, 788
MspA1I CMGCKG 3 cut(s) 230, 347, 686
MspCI CTTAAG 1 cut(s) 416
MspI CCGG 3 cut(s) 152, 407, 578
MspR9I CCNGG 6 cut(s) 96, 408, 654, 722, 975, 1182
Mva1269I GAATGC 3 cut(s) 62, 293, 1130
MvaI CCWGG 5 cut(s) 96, 654, 722, 975, 1182
MvnI CGCG 1 cut(s) 378
NciI CCSGG 1 cut(s) 408
NdeI CATATG 1 cut(s) 777
NdeII GATC 3 cut(s) 693, 717, 1272
NlaIII CATG 7 cut(s) 106, 313, 760, 814, 898, 1023, 1069
NlaIV GGNNCC 2 cut(s) 413, 658
NmuCI GTSAC 4 cut(s) 402, 616, 791, 1328
NruI TCGCGA 1 cut(s) 378
NspI RCATGY 1 cut(s) 814
PaeR7I CTCGAG 1 cut(s) 131
PagI TCATGA 1 cut(s) 894
PceI AGGCCT 1 cut(s) 916
PctI GAATGC 3 cut(s) 62, 293, 1130
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 3 cut(s) 211, 499, 555
PfoI TCCNGGA 2 cut(s) 720, 973
PkrI GCNGC 9 cut(s) 37, 101, 340, 343, 346, 349, 352, 685, 736
PleI GAGTC 3 cut(s) 449, 529, 970
PpsI GAGTC 3 cut(s) 449, 529, 970
PpuMI RGGWCCY 1 cut(s) 934
Psp5II RGGWCCY 1 cut(s) 934
Psp6I CCWGG 5 cut(s) 94, 652, 720, 973, 1180
PspEI GGTNACC 1 cut(s) 402
PspFI CCCAGC 1 cut(s) 857
PspGI CCWGG 5 cut(s) 94, 652, 720, 973, 1180
PspN4I GGNNCC 2 cut(s) 413, 658
PspPI GGNCC 3 cut(s) 242, 934, 1166
PspPPI RGGWCCY 1 cut(s) 934
PsrI GAACNNNNNNTAC 2 cut(s) 1061, 1093
PstI CTGCAG 3 cut(s) 346, 352, 554
PstNI CAGNNNCTG 1 cut(s) 356
PvuII CAGCTG 2 cut(s) 347, 686
RruI TCGCGA 1 cut(s) 378
RsaI GTAC 5 cut(s) 185, 396, 440, 868, 1016
RsaNI GTAC 5 cut(s) 184, 395, 439, 867, 1015
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 9 cut(s) 36, 100, 339, 342, 345, 348, 351, 684, 735
Sau3AI GATC 3 cut(s) 693, 717, 1272
Sau96I GGNCC 3 cut(s) 242, 934, 1166
ScaI AGTACT 3 cut(s) 396, 868, 1016
SchI GAGTC 3 cut(s) 449, 529, 971
ScrFI CCNGG 6 cut(s) 96, 408, 654, 722, 975, 1182
SduI GDGCHC 2 cut(s) 754, 1181
SfaNI GCATC 4 cut(s) 618, 679, 752, 1278
SfcI CTRYAG 4 cut(s) 342, 348, 550, 667
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 3 cut(s) 242, 934, 1166
SlaI CTCGAG 1 cut(s) 131
SmlI CTYRAG 3 cut(s) 131, 416, 1108
SmoI CTYRAG 3 cut(s) 131, 416, 1108
Sse9I AATT 2 cut(s) 257, 1314
SseBI AGGCCT 1 cut(s) 916
SsiI CCGC 1 cut(s) 228
SspMI CTAG 4 cut(s) 591, 938, 1197, 1333
StuI AGGCCT 1 cut(s) 916
StyD4I CCNGG 6 cut(s) 94, 406, 652, 720, 973, 1180
StyI CCWWGG 1 cut(s) 930
TaaI ACNGT 4 cut(s) 622, 715, 871, 1051
TaqI TCGA 1 cut(s) 132
TasI AATT 2 cut(s) 257, 1314
TatI WGTACW 3 cut(s) 394, 866, 1014
TfiI GAWTC 3 cut(s) 211, 499, 555
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 1 cut(s) 796
TseFI GTSAC 4 cut(s) 402, 616, 791, 1328
TseI GCWGC 9 cut(s) 35, 99, 338, 341, 344, 347, 350, 683, 734
Tsp45I GTSAC 4 cut(s) 402, 616, 791, 1328
TspDTI ATGAA 6 cut(s) 191, 491, 883, 911, 1025, 1082
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 1 cut(s) 796
Vha464I CTTAAG 1 cut(s) 416
VpaK11BI GGWCC 3 cut(s) 242, 934, 1166
XapI RAATTY 1 cut(s) 257
XceI RCATGY 1 cut(s) 814
XhoI CTCGAG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 4 cut(s) 591, 938, 1197, 1333
ZrmI AGTACT 3 cut(s) 396, 868, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.