Rh5AG188600

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002150
Physical Location & Seq
Forward (+)
21682629 .. 21683901
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG188600.1

Sequence Viewer

Length: 981 bp
ATGGACATGACCACCAAACAACAACTCAAGACACATTGGGAAGGAAAGAGCAAAGTACAAGTCTATCCTTTGTCCAAAATCTTCACCTTGGCTCTGGCTAGTAGATTCTTTCTGGGTATTGAGGACTATGACTGTGTGACTAAACTAGTCCAAGAATTTGATGATGTGTCTTTGGGCCTCCATTGCATCCCTTTGAATTTTCCAGGAACTATTTTCAATAGAGCAAGTAAAGGAGCAGCTGCTATAAGGAAGCAGATCATATCCATCATCAAGGAGAAGAAAGCTGCTGCTTTGTTAAGTGGGAAGCCAGGGCATGACATACTTTCTTACATGATTGCAAGTACTGATTCTTCAGGCAAGTTCATGCCTGAAACCGAGCTTGCTGATAAGGTCATGGGTTTGCTCACTGCTGGTTATAGCACAGTTGCTAGTGCTTTAACCTTTGTCGTGAAATTTGTTGGAGAAAGACCAGATATCTACAACAAGATACTTGCAGAGCAAATGGAGATAGCAAACTCAAAGAAACCAGATGACACTCTAAACTGGGATGACATACAGAAGATGAAATATTCATGGAATGTTGCTTGTGAAGCAATGAGGTTCTTTCCACCTCTTCAAGGAACATTTAGAGAGGCCATCACTGATATCTCCTTTGAAGGTTATACCATTCCAAAGGGTTGGAAGATATATTGGACGGTGAGTTCAACAAATAAGAACCCAGAATACTTTCCCAACCCAGAGAAGTTTGATCCTACAAGATATGAGGAGGGAAGTGCACAAGTGCCGTTCACATACGTCCCATTTGGGGGAGGACCAAGACTGTGCCCTGGAAAAGAGTACGCCAGGCTAGCAATACTCACTTTTCTTCACAATGTAGTGATGAAGTTCAAATGGGAGATCATGCTTCTCAATGAGAAGATGATAGGTGATATGATTCCTACACCAGCTCAAGGACTTCCAGTTCTCCTCAAACCACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko00904 ko00905 ko00906 ko01100 ko01110 map00830 map00904 map00905 map00906 map01100 map01110
Pfam Domains
Protein Families
p450

Protein Analysis

326

Amino Acids

36.72

Weight (kDa)

8.46

Isoelectric Point (pI)

32.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 13 - 301 3.6e-53 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 743
AcsI RAATTY 3 cut(s) 155, 196, 452
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 3 cut(s) 57, 343, 839
AfiI CCNNNNNNNGG 4 cut(s) 617, 805, 806, 950
AgsI TTSAA 6 cut(s) 196, 217, 617, 656, 705, 889
AhlI ACTAGT 1 cut(s) 145
AjnI CCWGG 4 cut(s) 202, 307, 826, 842
AloI GAACNNNNNNTCC 4 cut(s) 685, 717, 945, 977
AluBI AGCT 4 cut(s) 239, 284, 379, 947
AluI AGCT 4 cut(s) 239, 284, 379, 947
Alw21I GWGCWC 1 cut(s) 778
Alw44I GTGCAC 1 cut(s) 774
AlwI GGATC 1 cut(s) 743
AoxI GGCC 2 cut(s) 175, 633
ApaLI GTGCAC 1 cut(s) 774
ApeKI GCWGC 4 cut(s) 236, 239, 284, 287
ApoI RAATTY 3 cut(s) 155, 196, 452
ArsI GACNNNNNNTTYG 2 cut(s) 45, 77
Asp700I GAANNNNTTC 1 cut(s) 726
AspS9I GGNCC 2 cut(s) 175, 812
AsuHPI GGTGA 3 cut(s) 76, 709, 938
AsuNHI GCTAGC 1 cut(s) 847
AvaII GGWCC 1 cut(s) 812
BaeGI GKGCMC 2 cut(s) 778, 827
BarI GAAGNNNNNNTAC 2 cut(s) 334, 366
Bbv12I GWGCWC 1 cut(s) 778
BbvI GCAGC 4 cut(s) 226, 248, 271, 274
BccI CCATC 2 cut(s) 272, 644
BceAI ACGGC 1 cut(s) 769
BciT130I CCWGG 4 cut(s) 204, 309, 828, 844
BcuI ACTAGT 1 cut(s) 145
BfaI CTAG 4 cut(s) 99, 146, 429, 848
BisI GCNGC 4 cut(s) 237, 240, 285, 288
BlsI GCNGC 4 cut(s) 238, 241, 286, 289
BmcAI AGTACT 1 cut(s) 343
Bme1390I CCNGG 4 cut(s) 204, 309, 828, 844
Bme18I GGWCC 1 cut(s) 812
BmgT120I GGNCC 2 cut(s) 175, 812
BmrFI CCNGG 4 cut(s) 204, 309, 828, 844
BmrI ACTGGG 1 cut(s) 553
BmsI GCATC 1 cut(s) 195
BmtI GCTAGC 1 cut(s) 851
BmuI ACTGGG 1 cut(s) 553
BpuEI CTTGAG 2 cut(s) 11, 933
BsaJI CCNNGG 3 cut(s) 87, 308, 826
Bsc4I CCNNNNNNNGG 4 cut(s) 617, 805, 806, 950
Bse1I ACTGG 2 cut(s) 548, 959
Bse3DI GCAATG 2 cut(s) 181, 600
BseBI CCWGG 4 cut(s) 204, 309, 828, 844
BseDI CCNNGG 3 cut(s) 87, 308, 826
BseGI GGATG 2 cut(s) 186, 553
BseLI CCNNNNNNNGG 4 cut(s) 617, 805, 806, 950
BseMI GCAATG 2 cut(s) 181, 600
BseNI ACTGG 2 cut(s) 548, 959
BseRI GAGGAG 2 cut(s) 779, 956
BseSI GKGCMC 2 cut(s) 778, 827
BseXI GCAGC 4 cut(s) 226, 248, 271, 274
BshFI GGCC 2 cut(s) 177, 635
BsiHKAI GWGCWC 1 cut(s) 778
BslFI GGGAC 1 cut(s) 782
BslI CCNNNNNNNGG 4 cut(s) 617, 805, 806, 950
BsmFI GGGAC 1 cut(s) 782
BsnI GGCC 2 cut(s) 177, 635
Bsp1286I GDGCHC 2 cut(s) 778, 827
Bsp143I GATC 3 cut(s) 255, 748, 897
BspANI GGCC 2 cut(s) 177, 635
BspOI GCTAGC 1 cut(s) 851
BspPI GGATC 1 cut(s) 743
BsrDI GCAATG 2 cut(s) 181, 600
BsrI ACTGG 2 cut(s) 548, 959
BssECI CCNNGG 3 cut(s) 87, 308, 826
BssMI GATC 3 cut(s) 255, 748, 897
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 4 cut(s) 204, 309, 828, 844
Bst4CI ACNGT 4 cut(s) 134, 424, 697, 822
Bst6I CTCTTC 1 cut(s) 618
BstC8I GCNNGC 2 cut(s) 381, 849
BstENI CCTNNNNNAGG 1 cut(s) 615
BstF5I GGATG 2 cut(s) 186, 553
BstKTI GATC 3 cut(s) 258, 751, 900
BstMBI GATC 3 cut(s) 255, 748, 897
BstMWI GCNNNNNNNGC 3 cut(s) 183, 590, 848
BstNI CCWGG 4 cut(s) 204, 309, 828, 844
BstSCI CCNGG 4 cut(s) 202, 307, 826, 842
BstSLI GKGCMC 2 cut(s) 778, 827
BstV1I GCAGC 4 cut(s) 226, 248, 271, 274
BstXI CCANNNNNNTGG 1 cut(s) 678
BsuRI GGCC 2 cut(s) 177, 635
BtsCI GGATG 2 cut(s) 186, 553
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 2 cut(s) 405, 639
Cac8I GCNNGC 2 cut(s) 381, 849
Cfr13I GGNCC 2 cut(s) 175, 812
Csp6I GTAC 3 cut(s) 56, 342, 838
CviAII CATG 7 cut(s) 7, 314, 331, 364, 394, 573, 901
CviQI GTAC 3 cut(s) 56, 342, 838
DpnI GATC 3 cut(s) 257, 750, 899
DpnII GATC 3 cut(s) 255, 748, 897
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
Eco130I CCWWGG 1 cut(s) 87
Eco32I GATATC 2 cut(s) 475, 646
Eco47I GGWCC 1 cut(s) 812
Eco57I CTGAAG 1 cut(s) 336
EcoNI CCTNNNNNAGG 1 cut(s) 615
EcoRII CCWGG 4 cut(s) 202, 307, 826, 842
EcoRV GATATC 2 cut(s) 475, 646
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 7 cut(s) 10, 317, 334, 367, 397, 576, 904
FaqI GGGAC 1 cut(s) 782
FatI CATG 7 cut(s) 6, 313, 330, 363, 393, 572, 900
Fnu4HI GCNGC 4 cut(s) 237, 240, 285, 288
FokI GGATG 2 cut(s) 173, 560
Fsp4HI GCNGC 4 cut(s) 237, 240, 285, 288
FspBI CTAG 4 cut(s) 99, 146, 429, 848
GluI GCNGC 4 cut(s) 237, 240, 285, 288
HaeIII GGCC 2 cut(s) 177, 635
Hin1II CATG 7 cut(s) 10, 317, 334, 367, 397, 576, 904
HinfI GANTC 3 cut(s) 105, 347, 934
HphI GGTGA 3 cut(s) 76, 709, 938
Hpy166II GTNNAC 2 cut(s) 776, 789
Hpy188III TCNNGA 2 cut(s) 28, 448
Hpy8I GTNNAC 2 cut(s) 776, 789
HpyAV CCTTC 2 cut(s) 35, 650
HpyCH4III ACNGT 4 cut(s) 134, 424, 697, 822
HpyCH4IV ACGT 1 cut(s) 795
HpyCH4V TGCA 4 cut(s) 186, 338, 494, 776
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 590, 848
HpySE526I ACGT 1 cut(s) 795
Hsp92II CATG 7 cut(s) 10, 317, 334, 367, 397, 576, 904
Kzo9I GATC 3 cut(s) 255, 748, 897
LmnI GCTCC 1 cut(s) 233
Lsp1109I GCAGC 4 cut(s) 226, 248, 271, 274
LweI GCATC 1 cut(s) 195
MaeI CTAG 4 cut(s) 99, 146, 429, 848
MaeII ACGT 1 cut(s) 795
MaeIII GTNAC 1 cut(s) 136
MalI GATC 3 cut(s) 257, 750, 899
MboI GATC 3 cut(s) 255, 748, 897
MboII GAAGA 8 cut(s) 73, 289, 342, 571, 605, 694, 857, 928
MhlI GDGCHC 2 cut(s) 778, 827
MluCI AATT 3 cut(s) 155, 196, 452
MmeI TCCRAC 2 cut(s) 439, 659
MnlI CCTC 9 cut(s) 115, 188, 591, 621, 625, 757, 760, 803, 977
MroXI GAANNNNTTC 1 cut(s) 726
MseI TTAA 3 cut(s) 296, 437, 979
MspA1I CMGCKG 1 cut(s) 239
MspR9I CCNGG 4 cut(s) 204, 309, 828, 844
MvaI CCWGG 4 cut(s) 204, 309, 828, 844
MwoI GCNNNNNNNGC 3 cut(s) 183, 590, 848
NdeII GATC 3 cut(s) 255, 748, 897
NheI GCTAGC 1 cut(s) 847
NlaIII CATG 7 cut(s) 10, 317, 334, 367, 397, 576, 904
NmuCI GTSAC 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 3 cut(s) 105, 347, 934
PfoI TCCNGGA 1 cut(s) 202
PkrI GCNGC 4 cut(s) 238, 241, 286, 289
Psp6I CCWGG 4 cut(s) 202, 307, 826, 842
PspGI CCWGG 4 cut(s) 202, 307, 826, 842
PspPI GGNCC 2 cut(s) 175, 812
PsrI GAACNNNNNNTAC 2 cut(s) 707, 739
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 3 cut(s) 57, 343, 839
RsaNI GTAC 3 cut(s) 56, 342, 838
SaqAI TTAA 3 cut(s) 296, 437, 979
SatI GCNGC 4 cut(s) 237, 240, 285, 288
Sau3AI GATC 3 cut(s) 255, 748, 897
Sau96I GGNCC 2 cut(s) 175, 812
ScaI AGTACT 1 cut(s) 343
ScrFI CCNGG 4 cut(s) 204, 309, 828, 844
SduI GDGCHC 2 cut(s) 778, 827
SfaNI GCATC 1 cut(s) 195
SinI GGWCC 1 cut(s) 812
SmlI CTYRAG 2 cut(s) 26, 948
SmoI CTYRAG 2 cut(s) 26, 948
SpeI ACTAGT 1 cut(s) 145
Sse9I AATT 3 cut(s) 155, 196, 452
SspI AATATT 1 cut(s) 569
SspMI CTAG 4 cut(s) 99, 146, 429, 848
StyD4I CCNGG 4 cut(s) 202, 307, 826, 842
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 4 cut(s) 134, 424, 697, 822
TaiI ACGT 1 cut(s) 798
TasI AATT 3 cut(s) 155, 196, 452
TatI WGTACW 2 cut(s) 55, 341
TfiI GAWTC 3 cut(s) 105, 347, 934
Tru1I TTAA 3 cut(s) 296, 437, 979
Tru9I TTAA 3 cut(s) 296, 437, 979
TscAI CASTG 2 cut(s) 412, 646
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 4 cut(s) 236, 239, 284, 287
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 4 cut(s) 352, 561, 578, 896
TspRI CASTG 2 cut(s) 412, 646
VneI GTGCAC 1 cut(s) 774
VpaK11BI GGWCC 1 cut(s) 812
XagI CCTNNNNNAGG 1 cut(s) 615
XapI RAATTY 3 cut(s) 155, 196, 452
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 4 cut(s) 99, 146, 429, 848
ZrmI AGTACT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.