Rroxscaffold_1G00052770

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002150
Physical Location & Seq
Reverse (-)
73526719 .. 73528543
1825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052770.1

Sequence Viewer

Length: 1446 bp
ATGGAGCCTCTTTATCTTACTATCATAGTCATTGTTACCACCATTGTTCTTATCATTCTCACTTACCCCAAAAACTCTAGCCCCAACCACATCAACCTTCCCCCGGGCAGTTTCGGATGGCCAATTCTCGGGGAAACACTTGAATTCTTGTTTGGAAAGCCTGACAAATTTGTGGAGAAAAGGATGAAAAAGTACTCCTCTCATGTTTTCAAGACAAGAATTCTGGGTGAATATGTTGCAGTATTTTGTGGCCCTATTGGAAACAAGTTCATTTTTTCCAATGAGCAAAAACTTGTCACTGCTTGGCGCCCACATTCCCTCCAAAAGCTAATGCGTTCATACCAACAATCAGATCAAACCTCACCAACACCAACCCCAACTCTCAAGCCTACCCAAAACGAAACCACAGTAATCCGAACACCGGGTTTCTTCAAGCCTGAAGCTTTGGCTAGGTTCTCGGGGGTCATGGACATGACCACCAAGCAACAACTCAAGACACATTGGGAAGGAAAAAGCAAAGTACAAGTCTATCCTTTGTCCAAAATCTTCACCTTGGCTCTGGCTAGTAGATTCTTTCTGGGTATTGAGGACTATGACTGTGTGACTAAACTAGTCCAAGAGTTTGATGATGTGTCTTTGGGCCTCCATTGCATCCCTTTGAATTTTCCAGGAACTATTTTCAATAGGGCAAGTAAAGGAGCAGCTGCTATAAGGAAGCAGATCATATCCATCATCAAGGAGAAGAAAGCTGCTGCTTTGTTAAGTGGGAAGCCAGGGCGTGACATACTTTCTTACATGATTGCAAGTACTGATTCTTCAGGCAAGTTCATGCCTGAAACGGAGCTTGCTGATAAGGTCATGGGTTTGCTCACTGCTGGTTATAGCACAGTTGCTAGTGCTTTAACCTTTGTCATGAAATTTGTTGGAGAAAGACCAGATATCTACAACAAGATACTTGAAGAGCAAATGGAGATAGCAAACTCAAAGAAACCAGATGACACTCTAAACTGGGATGACATACAGAAGATGAAATATTCATGGAATGTTGCTTGTGAGGCAATGAGGTTCTTTCCACCTCTTCAAGGAACATTTAGAGAGGCCATCACTGATATCTCCTTTGAAGGCTATACCATTCCAAAGGGTTGGAAGATATATTGGACGGTGAGTTCAACAAATAAGAACCCAGAATACTTTCCCAACCCAGAGAAGTTTGATCCTACAAGATATGAGGAGGGAAGTGCGCAAGTGCCATTCACATACGTCCCATTTGGGGGAGGACCAAGACTGTGCCCTGGAAAAGAGTACGCCAGGCTAGCAATACTCACTTTTCTTCACAATGTAGTGATGAAGTTCAAATGGGAGATCATGCTTCTCAATGAGAAGATGATAGGTGATATGATTCCTACACCAGCTCAAGGACTTCCAGTTCTCCTCAAACCACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko00904 ko00905 ko00906 ko01100 ko01110 map00830 map00904 map00905 map00906 map01100 map01110
Pfam Domains
Protein Families
p450

Protein Analysis

481

Amino Acids

54.4

Weight (kDa)

9.14

Isoelectric Point (pI)

33.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 34 - 456 1.3e-58 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1242
AccB1I GGYRCC 1 cut(s) 306
AclWI GGATC 1 cut(s) 1208
AcoI YGGCCR 1 cut(s) 119
AcsI RAATTY 5 cut(s) 143, 167, 219, 661, 917
AcuI CTGAAG 2 cut(s) 459, 801
AcyI GRCGYC 1 cut(s) 307
AfaI GTAC 4 cut(s) 194, 522, 808, 1304
AfiI CCNNNNNNNGG 7 cut(s) 103, 128, 421, 1082, 1270, 1271, 1415
AhlI ACTAGT 1 cut(s) 610
AjnI CCWGG 4 cut(s) 667, 772, 1291, 1307
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AloI GAACNNNNNNTCC 4 cut(s) 1150, 1182, 1410, 1442
AluBI AGCT 6 cut(s) 328, 443, 704, 749, 844, 1412
AluI AGCT 6 cut(s) 328, 443, 704, 749, 844, 1412
AlwI GGATC 1 cut(s) 1208
Ama87I CYCGRG 3 cut(s) 103, 128, 457
AoxI GGCC 4 cut(s) 119, 250, 640, 1098
ApeKI GCWGC 4 cut(s) 701, 704, 749, 752
ApoI RAATTY 5 cut(s) 143, 167, 219, 661, 917
ArsI GACNNNNNNTTYG 2 cut(s) 510, 542
Asp700I GAANNNNTTC 1 cut(s) 1191
AspLEI GCGC 2 cut(s) 309, 1243
AspS9I GGNCC 3 cut(s) 251, 640, 1277
AsuC2I CCSGG 3 cut(s) 104, 105, 423
AsuHPI GGTGA 5 cut(s) 239, 354, 541, 1174, 1403
AsuNHI GCTAGC 1 cut(s) 1312
AvaI CYCGRG 3 cut(s) 103, 128, 457
AvaII GGWCC 1 cut(s) 1277
BaeGI GKGCMC 1 cut(s) 1292
BalI TGGCCA 1 cut(s) 121
BanI GGYRCC 1 cut(s) 306
BarI GAAGNNNNNNTAC 2 cut(s) 799, 831
BbvI GCAGC 4 cut(s) 691, 713, 736, 739
BccI CCATC 3 cut(s) 111, 737, 1109
BciT130I CCWGG 4 cut(s) 669, 774, 1293, 1309
BcnI CCSGG 3 cut(s) 104, 105, 423
BcuI ACTAGT 1 cut(s) 610
BfaI CTAG 6 cut(s) 78, 450, 564, 611, 894, 1313
BfoI RGCGCY 1 cut(s) 310
BisI GCNGC 4 cut(s) 702, 705, 750, 753
BlsI GCNGC 4 cut(s) 703, 706, 751, 754
BmcAI AGTACT 2 cut(s) 194, 808
Bme1390I CCNGG 7 cut(s) 104, 105, 423, 669, 774, 1293, 1309
Bme18I GGWCC 1 cut(s) 1277
BmeT110I CYCGRG 3 cut(s) 103, 128, 457
BmgT120I GGNCC 3 cut(s) 251, 640, 1277
BmiI GGNNCC 2 cut(s) 6, 308
BmrFI CCNGG 7 cut(s) 104, 105, 423, 669, 774, 1293, 1309
BmrI ACTGGG 1 cut(s) 1018
BmsI GCATC 1 cut(s) 660
BmtI GCTAGC 1 cut(s) 1316
BmuI ACTGGG 1 cut(s) 1018
BpuEI CTTGAG 3 cut(s) 368, 476, 1398
BpuMI CCSGG 3 cut(s) 104, 105, 423
BsaHI GRCGYC 1 cut(s) 307
BsaJI CCNNGG 5 cut(s) 102, 103, 552, 773, 1291
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 7 cut(s) 103, 128, 421, 1082, 1270, 1271, 1415
Bse1I ACTGG 2 cut(s) 1013, 1424
Bse3DI GCAATG 2 cut(s) 646, 1065
BseBI CCWGG 4 cut(s) 669, 774, 1293, 1309
BseDI CCNNGG 5 cut(s) 102, 103, 552, 773, 1291
BseGI GGATG 4 cut(s) 122, 189, 651, 1018
BseLI CCNNNNNNNGG 7 cut(s) 103, 128, 421, 1082, 1270, 1271, 1415
BseMI GCAATG 2 cut(s) 646, 1065
BseNI ACTGG 2 cut(s) 1013, 1424
BseRI GAGGAG 3 cut(s) 187, 1244, 1421
BseSI GKGCMC 1 cut(s) 1292
BseXI GCAGC 4 cut(s) 691, 713, 736, 739
BshFI GGCC 4 cut(s) 121, 252, 642, 1100
BshNI GGYRCC 1 cut(s) 306
BsiHKCI CYCGRG 3 cut(s) 103, 128, 457
BsiSI CCGG 2 cut(s) 104, 422
BslFI GGGAC 1 cut(s) 1247
BslI CCNNNNNNNGG 7 cut(s) 103, 128, 421, 1082, 1270, 1271, 1415
BsmFI GGGAC 1 cut(s) 1247
BsnI GGCC 4 cut(s) 121, 252, 642, 1100
BsoBI CYCGRG 3 cut(s) 103, 128, 457
Bsp1286I GDGCHC 1 cut(s) 1292
Bsp143I GATC 4 cut(s) 352, 720, 1213, 1362
BspANI GGCC 4 cut(s) 121, 252, 642, 1100
BspHI TCATGA 1 cut(s) 912
BspLI GGNNCC 2 cut(s) 6, 308
BspOI GCTAGC 1 cut(s) 1316
BspPI GGATC 1 cut(s) 1208
BspQI GCTCTTC 1 cut(s) 954
BspT107I GGYRCC 1 cut(s) 306
BsrDI GCAATG 2 cut(s) 646, 1065
BsrI ACTGG 2 cut(s) 1013, 1424
BssECI CCNNGG 5 cut(s) 102, 103, 552, 773, 1291
BssMI GATC 4 cut(s) 352, 720, 1213, 1362
BssNI GRCGYC 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 552
Bst2UI CCWGG 4 cut(s) 669, 774, 1293, 1309
Bst4CI ACNGT 5 cut(s) 409, 599, 889, 1162, 1287
Bst6I CTCTTC 2 cut(s) 954, 1083
BstACI GRCGYC 1 cut(s) 307
BstC8I GCNNGC 2 cut(s) 846, 1314
BstENI CCTNNNNNAGG 1 cut(s) 1080
BstF5I GGATG 4 cut(s) 122, 189, 651, 1018
BstH2I RGCGCY 1 cut(s) 310
BstHHI GCGC 2 cut(s) 309, 1243
BstKTI GATC 4 cut(s) 355, 723, 1216, 1365
BstMBI GATC 4 cut(s) 352, 720, 1213, 1362
BstMWI GCNNNNNNNGC 3 cut(s) 648, 1055, 1313
BstNI CCWGG 4 cut(s) 669, 774, 1293, 1309
BstSCI CCNGG 7 cut(s) 102, 103, 421, 667, 772, 1291, 1307
BstSLI GKGCMC 1 cut(s) 1292
BstV1I GCAGC 4 cut(s) 691, 713, 736, 739
BstXI CCANNNNNNTGG 1 cut(s) 1143
BsuRI GGCC 4 cut(s) 121, 252, 642, 1100
BtsCI GGATG 4 cut(s) 122, 189, 651, 1018
BtsI GCAGTG 2 cut(s) 297, 870
BtsIMutI CAGTG 3 cut(s) 297, 870, 1104
Cac8I GCNNGC 2 cut(s) 846, 1314
CciI TCATGA 1 cut(s) 912
CfoI GCGC 2 cut(s) 309, 1243
Cfr13I GGNCC 3 cut(s) 251, 640, 1277
Cfr9I CCCGGG 1 cut(s) 103
Csp6I GTAC 4 cut(s) 193, 521, 807, 1303
CviAII CATG 9 cut(s) 203, 466, 472, 796, 829, 859, 913, 1038, 1366
CviQI GTAC 4 cut(s) 193, 521, 807, 1303
DinI GGCGCC 1 cut(s) 308
DpnI GATC 4 cut(s) 354, 722, 1215, 1364
DpnII GATC 4 cut(s) 352, 720, 1213, 1362
EaeI YGGCCR 1 cut(s) 119
Eam1104I CTCTTC 2 cut(s) 954, 1083
EarI CTCTTC 2 cut(s) 954, 1083
Eco130I CCWWGG 1 cut(s) 552
Eco32I GATATC 2 cut(s) 940, 1111
Eco47I GGWCC 1 cut(s) 1277
Eco57I CTGAAG 2 cut(s) 459, 801
Eco88I CYCGRG 3 cut(s) 103, 128, 457
EcoNI CCTNNNNNAGG 1 cut(s) 1080
EcoRI GAATTC 2 cut(s) 143, 219
EcoRII CCWGG 4 cut(s) 667, 772, 1291, 1307
EcoRV GATATC 2 cut(s) 940, 1111
EcoT14I CCWWGG 1 cut(s) 552
EgeI GGCGCC 1 cut(s) 308
EheI GGCGCC 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 552
FaeI CATG 9 cut(s) 206, 469, 475, 799, 832, 862, 916, 1041, 1369
FaqI GGGAC 1 cut(s) 1247
FatI CATG 9 cut(s) 202, 465, 471, 795, 828, 858, 912, 1037, 1365
Fnu4HI GCNGC 4 cut(s) 702, 705, 750, 753
FokI GGATG 4 cut(s) 129, 196, 638, 1025
Fsp4HI GCNGC 4 cut(s) 702, 705, 750, 753
FspBI CTAG 6 cut(s) 78, 450, 564, 611, 894, 1313
FspI TGCGCA 1 cut(s) 1242
GlaI GCGC 2 cut(s) 308, 1242
GluI GCNGC 4 cut(s) 702, 705, 750, 753
HaeII RGCGCY 1 cut(s) 310
HaeIII GGCC 4 cut(s) 121, 252, 642, 1100
HapII CCGG 2 cut(s) 104, 422
HhaI GCGC 2 cut(s) 309, 1243
Hin1I GRCGYC 1 cut(s) 307
Hin1II CATG 9 cut(s) 206, 469, 475, 799, 832, 862, 916, 1041, 1369
Hin6I GCGC 2 cut(s) 307, 1241
HinP1I GCGC 2 cut(s) 307, 1241
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 3 cut(s) 570, 812, 1399
HpaII CCGG 2 cut(s) 104, 422
HphI GGTGA 5 cut(s) 239, 354, 541, 1174, 1403
Hpy188I TCNGA 3 cut(s) 116, 352, 416
Hpy188III TCNNGA 3 cut(s) 211, 493, 913
HpyAV CCTTC 3 cut(s) 107, 500, 1115
HpyCH4III ACNGT 5 cut(s) 409, 599, 889, 1162, 1287
HpyCH4IV ACGT 1 cut(s) 1260
HpyCH4V TGCA 3 cut(s) 239, 651, 803
HpyF10VI GCNNNNNNNGC 3 cut(s) 648, 1055, 1313
HpySE526I ACGT 1 cut(s) 1260
Hsp92I GRCGYC 1 cut(s) 307
Hsp92II CATG 9 cut(s) 206, 469, 475, 799, 832, 862, 916, 1041, 1369
HspAI GCGC 2 cut(s) 307, 1241
KasI GGCGCC 1 cut(s) 306
Kzo9I GATC 4 cut(s) 352, 720, 1213, 1362
LguI GCTCTTC 1 cut(s) 954
LmnI GCTCC 3 cut(s) 4, 698, 841
Lsp1109I GCAGC 4 cut(s) 691, 713, 736, 739
LweI GCATC 1 cut(s) 660
MaeI CTAG 6 cut(s) 78, 450, 564, 611, 894, 1313
MaeII ACGT 1 cut(s) 1260
MaeIII GTNAC 4 cut(s) 34, 295, 601, 779
MalI GATC 4 cut(s) 354, 722, 1215, 1364
MboI GATC 4 cut(s) 352, 720, 1213, 1362
MhlI GDGCHC 1 cut(s) 1292
MlsI TGGCCA 1 cut(s) 121
MluCI AATT 6 cut(s) 123, 143, 167, 219, 661, 917
MluNI TGGCCA 1 cut(s) 121
Mly113I GGCGCC 1 cut(s) 307
MmeI TCCRAC 2 cut(s) 904, 1124
Mox20I TGGCCA 1 cut(s) 121
MroXI GAANNNNTTC 1 cut(s) 1191
MscI TGGCCA 1 cut(s) 121
MseI TTAA 3 cut(s) 761, 902, 1444
MslI CAYNNNNRTG 1 cut(s) 470
Msp20I TGGCCA 1 cut(s) 121
MspA1I CMGCKG 1 cut(s) 704
MspI CCGG 2 cut(s) 104, 422
MspR9I CCNGG 7 cut(s) 104, 105, 423, 669, 774, 1293, 1309
MvaI CCWGG 4 cut(s) 669, 774, 1293, 1309
MwoI GCNNNNNNNGC 3 cut(s) 648, 1055, 1313
NarI GGCGCC 1 cut(s) 307
NciI CCSGG 3 cut(s) 104, 105, 423
NdeII GATC 4 cut(s) 352, 720, 1213, 1362
NheI GCTAGC 1 cut(s) 1312
NlaIII CATG 9 cut(s) 206, 469, 475, 799, 832, 862, 916, 1041, 1369
NlaIV GGNNCC 2 cut(s) 6, 308
NmuCI GTSAC 3 cut(s) 295, 601, 779
NsbI TGCGCA 1 cut(s) 1242
PagI TCATGA 1 cut(s) 912
PciSI GCTCTTC 1 cut(s) 954
PdmI GAANNNNTTC 1 cut(s) 1191
PfeI GAWTC 3 cut(s) 570, 812, 1399
PfoI TCCNGGA 1 cut(s) 667
PkrI GCNGC 4 cut(s) 703, 706, 751, 754
PluTI GGCGCC 1 cut(s) 310
Psp6I CCWGG 4 cut(s) 667, 772, 1291, 1307
PspGI CCWGG 4 cut(s) 667, 772, 1291, 1307
PspN4I GGNNCC 2 cut(s) 6, 308
PspPI GGNCC 3 cut(s) 251, 640, 1277
PsrI GAACNNNNNNTAC 2 cut(s) 1172, 1204
PvuII CAGCTG 1 cut(s) 704
RsaI GTAC 4 cut(s) 194, 522, 808, 1304
RsaNI GTAC 4 cut(s) 193, 521, 807, 1303
RseI CAYNNNNRTG 1 cut(s) 470
SapI GCTCTTC 1 cut(s) 954
SaqAI TTAA 3 cut(s) 761, 902, 1444
SatI GCNGC 4 cut(s) 702, 705, 750, 753
Sau3AI GATC 4 cut(s) 352, 720, 1213, 1362
Sau96I GGNCC 3 cut(s) 251, 640, 1277
ScaI AGTACT 2 cut(s) 194, 808
ScrFI CCNGG 7 cut(s) 104, 105, 423, 669, 774, 1293, 1309
SduI GDGCHC 1 cut(s) 1292
SfaNI GCATC 1 cut(s) 660
SfoI GGCGCC 1 cut(s) 308
SinI GGWCC 1 cut(s) 1277
SmaI CCCGGG 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 3 cut(s) 383, 491, 1413
SmoI CTYRAG 3 cut(s) 383, 491, 1413
SpeI ACTAGT 1 cut(s) 610
Sse9I AATT 6 cut(s) 123, 143, 167, 219, 661, 917
SspDI GGCGCC 1 cut(s) 306
SspI AATATT 1 cut(s) 1034
SspMI CTAG 6 cut(s) 78, 450, 564, 611, 894, 1313
StyD4I CCNGG 7 cut(s) 102, 103, 421, 667, 772, 1291, 1307
StyI CCWWGG 1 cut(s) 552
TaaI ACNGT 5 cut(s) 409, 599, 889, 1162, 1287
TaiI ACGT 1 cut(s) 1263
TasI AATT 6 cut(s) 123, 143, 167, 219, 661, 917
TatI WGTACW 3 cut(s) 192, 520, 806
TfiI GAWTC 3 cut(s) 570, 812, 1399
Tru1I TTAA 3 cut(s) 761, 902, 1444
Tru9I TTAA 3 cut(s) 761, 902, 1444
TscAI CASTG 3 cut(s) 304, 877, 1111
TseFI GTSAC 3 cut(s) 295, 601, 779
TseI GCWGC 4 cut(s) 701, 704, 749, 752
Tsp45I GTSAC 3 cut(s) 295, 601, 779
TspDTI ATGAA 8 cut(s) 200, 259, 327, 817, 929, 1026, 1043, 1361
TspGWI ACGGA 1 cut(s) 854
TspMI CCCGGG 1 cut(s) 103
TspRI CASTG 3 cut(s) 304, 877, 1111
VpaK11BI GGWCC 1 cut(s) 1277
XagI CCTNNNNNAGG 1 cut(s) 1080
XapI RAATTY 5 cut(s) 143, 167, 219, 661, 917
XmaI CCCGGG 1 cut(s) 103
XmnI GAANNNNTTC 1 cut(s) 1191
XspI CTAG 6 cut(s) 78, 450, 564, 611, 894, 1313
ZrmI AGTACT 2 cut(s) 194, 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.